Department of Bioengineering
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Enabling interspecies epigenomic comparison with CEpBrowser.
Bioinformatics (Oxford, England) May, 2013 | Pubmed ID: 23543396
Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions.
PLoS computational biology , 2013 | Pubmed ID: 24339764
From genomes to societies: a holistic view of determinants of human health.
Current opinion in biotechnology Aug, 2014 | Pubmed ID: 24686286
Comparative epigenomics: defining and utilizing epigenomic variations across species, time-course, and individuals.
Wiley interdisciplinary reviews. Systems biology and medicine Sep-Oct, 2014 | Pubmed ID: 25044241
Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing.
Genome research Nov, 2014 | Pubmed ID: 25096407
P16INK4a Upregulation Mediated by SIX6 Defines Retinal Ganglion Cell Pathogenesis in Glaucoma.
Molecular cell Sep, 2015 | Pubmed ID: 26365380
GeNemo: a search engine for web-based functional genomic data.
Nucleic acids research Jul, 2016 | Pubmed ID: 27098038
Transcriptomic insights into the genetic basis of mammalian limb diversity.
BMC evolutionary biology Mar, 2017 | Pubmed ID: 28335721
SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination.
Cell reports Mar, 2017 | Pubmed ID: 28355564
The 4D nucleome project.
Nature 09, 2017 | Pubmed ID: 28905911
Trends in Cannabis Use Disorder among Pregnant Women in the U.S., 1993-2014.
Journal of general internal medicine 03, 2018 | Pubmed ID: 29030807
GIVE: portable genome browsers for personal websites.
Genome biology 07, 2018 | Pubmed ID: 30016975
RNA, Action through Interactions.
Trends in genetics : TIG 11, 2018 | Pubmed ID: 30177410
RNAs as Proximity-Labeling Media for Identifying Nuclear Speckle Positions Relative to the Genome.
iScience Jun, 2018 | Pubmed ID: 30240742
Rainbow-Seq: Combining Cell Lineage Tracing with Single-Cell RNA Sequencing in Preimplantation Embryos.
iScience , | Pubmed ID: 30267678
GITAR: An Open Source Tool for Analysis and Visualization of Hi-C Data.
Genomics, proteomics & bioinformatics 10, 2018 | Pubmed ID: 30553884
A likelihood approach to testing hypotheses on the co-evolution of epigenome and genome.
PLoS computational biology 12, 2018 | Pubmed ID: 30586383
EpiAlignment: alignment with both DNA sequence and epigenomic data.
Nucleic acids research 07, 2019 | Pubmed ID: 31114924
Extracellular RNA in a single droplet of human serum reflects physiologic and disease states.
Proceedings of the National Academy of Sciences of the United States of America 09, 2019 | Pubmed ID: 31481608
Reply to Hartl and Gao: Lack of between-batch difference in the distributions of measured extracellular RNA levels.
Proceedings of the National Academy of Sciences of the United States of America , | Pubmed ID: 31964851
Reply to Verwilt et al.: Experimental evidence against DNA contamination in SILVER-seq.
Proceedings of the National Academy of Sciences of the United States of America , | Pubmed ID: 32788395
Natural display of nuclear-encoded RNA on the cell surface and its impact on cell interaction.
Genome biology , | Pubmed ID: 32907628
Stress-induced RNA-chromatin interactions promote endothelial dysfunction.
Nature communications , | Pubmed ID: 33060583
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