Molecular Biophysics and Integrative Bio-Imaging Division
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Modeling chemical bonding effects for protein electron crystallography: the transferable fragmental electrostatic potential (TFESP) method.
Acta crystallographica. Section A, Foundations of crystallography Mar, 2002 | Pubmed ID: 11832586
A giant protease with a twist: the TPP II complex from Drosophila studied by electron microscopy.
The EMBO journal Nov, 2002 | Pubmed ID: 12426370
Crystallization of membrane proteins from media composed of connected-bilayer gels.
Biopolymers , 2002 | Pubmed ID: 12539259
Crystal structure of the bromide-bound D85S mutant of bacteriorhodopsin: principles of ion pumping.
Biophysical journal Jul, 2003 | Pubmed ID: 12829500
Specificity of anion binding in the substrate pocket of bacteriorhodopsin.
Biochemistry May, 2004 | Pubmed ID: 15109251
Electron microscopy of biological macromolecules: bridging the gap between what physics allows and what we currently can get.
Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada Feb, 2004 | Pubmed ID: 15306063
High-throughput film-densitometry: an efficient approach to generate large data sets.
Journal of structural biology Jan, 2005 | Pubmed ID: 15629654
Particle picking by segmentation: a comparative study with SPIDER-based manual particle picking.
Journal of structural biology Dec, 2005 | Pubmed ID: 16330229
The parallelization of SPIDER on distributed-memory computers using MPI.
Journal of structural biology Jan, 2007 | Pubmed ID: 16859923
Stroboscopic image capture: reducing the dose per frame by a factor of 30 does not prevent beam-induced specimen movement in paraffin.
Ultramicroscopy , 2007 | Pubmed ID: 16905258
SPARX, a new environment for Cryo-EM image processing.
Journal of structural biology Jan, 2007 | Pubmed ID: 16931051
Design of a microfabricated, two-electrode phase-contrast element suitable for electron microscopy.
Ultramicroscopy , 2007 | Pubmed ID: 17079082
Octomeric pyruvate-ferredoxin oxidoreductase from Desulfovibrio vulgaris.
Journal of structural biology Jul, 2007 | Pubmed ID: 17400475
Macromolecular structures without crystals.
Proceedings of the National Academy of Sciences of the United States of America Feb, 2008 | Pubmed ID: 18256181
Restoration of weak phase-contrast images recorded with a high degree of defocus: the "twin image" problem associated with CTF correction.
Ultramicroscopy Aug, 2008 | Pubmed ID: 18508199
Retrospective: radiation damage and its associated "information limitations".
Journal of structural biology Sep, 2008 | Pubmed ID: 18588985
Retrospective on the early development of cryoelectron microscopy of macromolecules and a prospective on opportunities for the future.
Journal of structural biology Sep, 2008 | Pubmed ID: 18606231
Practical factors affecting the performance of a thin-film phase plate for transmission electron microscopy.
Ultramicroscopy Mar, 2009 | Pubmed ID: 19157711
A method for the alignment of heterogeneous macromolecules from electron microscopy.
Journal of structural biology Apr, 2009 | Pubmed ID: 19166941
Experimental characterization and mitigation of specimen charging on thin films with one conducting layer.
Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada Dec, 2004 | Pubmed ID: 19780320
Survey of large protein complexes in D. vulgaris reveals great structural diversity.
Proceedings of the National Academy of Sciences of the United States of America Sep, 2009 | Pubmed ID: 19805340
Precise beam-tilt alignment and collimation are required to minimize the phase error associated with coma in high-resolution cryo-EM.
Journal of structural biology Apr, 2011 | Pubmed ID: 21182964
The surface of evaporated carbon films is an insulating, high-bandgap material.
Journal of structural biology May, 2011 | Pubmed ID: 21338687
Reaching the information limit in cryo-EM of biological macromolecules: experimental aspects.
Biophysical journal May, 2011 | Pubmed ID: 21575566
Design of a hybrid double-sideband/single-sideband (schlieren) objective aperture suitable for electron microscopy.
Ultramicroscopy Dec, 2011 | Pubmed ID: 22088443
Human tripeptidyl peptidase II: a gentle giant.
Structure (London, England : 1993) Apr, 2012 | Pubmed ID: 22483101
Electron microscopy of biotinylated protein complexes bound to streptavidin monolayer crystals.
Journal of structural biology Oct, 2012 | Pubmed ID: 22584152
Electron microscopy of biological specimens in liquid water.
Biophysical journal Jul, 2012 | Pubmed ID: 22828343
Deprotonation of D96 in bacteriorhodopsin opens the proton uptake pathway.
Structure (London, England : 1993) Feb, 2013 | Pubmed ID: 23394942
Ranking TEM cameras by their response to electron shot noise.
Ultramicroscopy Oct, 2013 | Pubmed ID: 23747527
Minimizing electrostatic charging of an aperture used to produce in-focus phase contrast in the TEM.
Ultramicroscopy Dec, 2013 | Pubmed ID: 23872037
Optimal and fast rotational alignment of volumes with missing data in Fourier space.
Journal of structural biology Nov, 2013 | Pubmed ID: 23994045
Replication and validation of cryo-EM structures.
Journal of structural biology Nov, 2013 | Pubmed ID: 24036314
Invited review article: Methods for imaging weak-phase objects in electron microscopy.
The Review of scientific instruments Nov, 2013 | Pubmed ID: 24289381
Generalization of the Matsumoto-Tonomura approximation for the phase shift within an open aperture.
Ultramicroscopy Mar, 2014 | Pubmed ID: 24333773
Disulfide linkage and structure of highly stable yeast-derived virus-like particles of murine polyomavirus.
The Journal of biological chemistry Apr, 2014 | Pubmed ID: 24567335
Automated particle correspondence and accurate tilt-axis detection in tilted-image pairs.
Journal of structural biology Jul, 2014 | Pubmed ID: 24694675
Factors that Influence the Formation and Stability of Thin, Cryo-EM Specimens.
Biophysical journal Feb, 2016 | Pubmed ID: 26386606
How good can cryo-EM become?
Nature methods Jan, 2016 | Pubmed ID: 26716559
Protein complexes in focus.
eLife Apr, 2016 | Pubmed ID: 27124202
Long shelf-life streptavidin support-films suitable for electron microscopy of biological macromolecules.
Journal of structural biology Aug, 2016 | Pubmed ID: 27320699
Specimen Behavior in the Electron Beam.
Methods in enzymology , 2016 | Pubmed ID: 27572722
Monolayer-crystal streptavidin support films provide an internal standard of cryo-EM image quality.
Journal of structural biology Dec, 2017 | Pubmed ID: 28259651
Multi-pass transmission electron microscopy.
Scientific reports May, 2017 | Pubmed ID: 28490730
Opinion: hazards faced by macromolecules when confined to thin aqueous films.
Biophysics reports , 2017 | Pubmed ID: 28781996
Estimating the effect of finite depth of field in single-particle cryo-EM.
Ultramicroscopy Jan, 2018 | Pubmed ID: 28869854
How Cryo-EM Became so Hot.
Cell Nov, 2017 | Pubmed ID: 29195065
PROTEINS, INTERFACES, AND CRYO-EM GRIDS.
Current opinion in colloid & interface science Mar, 2018 | Pubmed ID: 29867291
How Good Can Single-Particle Cryo-EM Become? What Remains Before It Approaches Its Physical Limits?
Annual review of biophysics May, 2019 | Pubmed ID: 30786229
Current outcomes when optimizing 'standard' sample preparation for single-particle cryo-EM.
Journal of microscopy Oct, 2019 | Pubmed ID: 31553060
Laser phase plate for transmission electron microscopy.
Nature methods Oct, 2019 | Pubmed ID: 31562475
Microscale Fluid Behavior during Cryo-EM Sample Blotting.
Biophysical journal Feb, 2020 | Pubmed ID: 31952802
Observation of the Relativistic Reversal of the Ponderomotive Potential.
Physical review letters May, 2020 | Pubmed ID: 32412292
Spectral DQE of the Volta phase plate.
Ultramicroscopy Nov, 2020 | Pubmed ID: 32739753
Defocus-dependent Thon-ring fading.
Ultramicroscopy Mar, 2021 | Pubmed ID: 33524638
Preparing Better Samples for Cryo-Electron Microscopy: Biochemical Challenges Do Not End with Isolation and Purification.
Annual review of biochemistry Jun, 2021 | Pubmed ID: 33556280
Minimizing Crinkling of Soft Specimens Using Holey Gold Films on Molybdenum Grids for Cryogenic Electron Microscopy.
Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada Aug, 2021 | Pubmed ID: 34085628
High-power near-concentric Fabry-Perot cavity for phase contrast electron microscopy.
The Review of scientific instruments May, 2021 | Pubmed ID: 34243315
Simple assay for adsorption of proteins to the air-water interface.
Journal of structural biology Dec, 2021 | Pubmed ID: 34534654
Conquer by cryo-EM without physically dividing.
Biochemical Society transactions Nov, 2021 | Pubmed ID: 34709401
Perspective: Emerging strategies for determining atomic-resolution structures of macromolecular complexes within cells.
Journal of structural biology Mar, 2022 | Pubmed ID: 34915129
Perspective: Biochemical and Physical Constraints Associated With Preparing Thin Specimens for Single-Particle Cryo-EM.
Frontiers in molecular biosciences , 2022 | Pubmed ID: 35573724
Overcoming resolution loss due to thermal magnetic field fluctuations from phase plates in transmission electron microscopy.
bioRxiv : the preprint server for biology Feb, 2023 | Pubmed ID: 36824829
Overcoming resolution loss due to thermal magnetic field fluctuations from phase plates in transmission electron microscopy.
Ultramicroscopy Jul, 2023 | Pubmed ID: 37011498
Challenges in making ideal cryo-EM samples.
Current opinion in structural biology Aug, 2023 | Pubmed ID: 37392555
Overcoming Resolution Loss in Laser Phase Plate Cryo-Electron Microscopy.
Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada Jul, 2023 | Pubmed ID: 37613521
Trinity Cookis1,
Paul Sauer2,3,
Simon Poepsel4,5,
Bong-Gyoon Han6,
Dominik A. Herbst1,2,6,
Robert Glaeser6,
Eva Nogales1,2,3,6
1Department of Molecular and Cell Biology, University of California, Berkeley,
2California Institute for Quantitative Biology (QB3), University of California, Berkeley,
3Howard Hughes Medical Institute, University of California, Berkeley,
4Center for Molecular Medicine Cologne (CMMC), Faculty of Medicine and University Hospital, University of Cologne,
5Cologne Excellence Cluster for Cellular Stress Responses in Ageing-Associated Diseases (CECAD), University of Cologne,
6Molecular Biophysics and Integrative Bio-Imaging Division, Lawrence Berkeley National Laboratory
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