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Université Grenoble Alpes

7 ARTICLES PUBLISHED IN JoVE

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Environment

Dispersion of Nanomaterials in Aqueous Media: Towards Protocol Optimization
Inder Kaur 1, Laura-Jayne Ellis 1, Isabella Romer 1, Ratna Tantra 2, Marie Carriere 3,4, Soline Allard 5, Martine Mayne-L'Hermite 5, Caterina Minelli 6, Wolfgang Unger 7, Annegret Potthoff 8, Steffi Rades 7, Eugenia Valsami-Jones 1
1School of Geography, Earth and Environmental Sciences, University of Birmingham, 2Analytical Science, National Physical Laboratory, 3INAC-LCIB, Université Grenoble Alpes, 4CEA, INAC-SyMMES, 5NIMBE, CEA, CNRS, Université Paris-Saclay, CEA Saclay, 6Chemical, Medical and Environmental Science, National Physical Laboratory, 7BAM Division 6.1 'Surface Analysis and Interfacial Chemistry', BAM Federal Institute for Materials Research and Testing, 8Fraunhofer Institute for Ceramic Technologies and Systems

Here, we present a step-wise protocol for the dispersion of nanomaterials in aqueous media with real-time characterization to identify the optimal sonication conditions, intensity, and duration for improved stability and uniformity of nanoparticle dispersions without impacting the sample integrity.

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Biology

Lens-free Video Microscopy for the Dynamic and Quantitative Analysis of Adherent Cell Culture
Cedric Allier 1, Romaric Vincent 1, Fabrice Navarro 2, Mathilde Menneteau 2, Lamya Ghenim 3,4, Xavier Gidrol 3, Thomas Bordy 1, Lionel Hervé 1, Olivier Cioni 1, Sabine Bardin 5, Michel Bornens 5, Yves Usson 4,6, Sophie Morales 1
1CEA, LETI, DTBS, LISA, Université Grenoble Alpes, 2CEA, LETI, DTBS, LBAM, Université Grenoble Alpes, 3CEA, INSERM, BIG, Université Grenoble Alpes, 4CNRS, FR CNRS 3425, 5CNRS, UMR 144, Molecular Mechanisms of Intracellular Transport, PSL Research University, Institut Curie, 6TIMC-IMAG

Lens-free video microscopy enables us to monitor cell cultures directly inside the incubator. Here we describe the full protocol used to acquire and analyze a 2.7 day long acquisition of cultured HeLa cells, leading to a dataset of 2.2 x 106 measurements of individual cell morphology and 10584 cell cycle tracks.

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Biochemistry

Proteomic Analysis of Human Macrophage Polarization Under a Low Oxygen Environment
Magali Court 1,2, Marie Malier 1,2, Arnaud Millet 1,2,3
1Team Mechanobiology, Immunity and Cancer, Institute for Advanced Biosciences, INSERM U1209, CNRS UMR5309, 2Université Grenoble Alpes, 3Pôle Recherche, Centre Hospitalier Universitaire des Alpes

We present a protocol to obtain proteomic signatures of human macrophages and apply this to determination of the impact of a low oxygen environment on macrophage polarization.

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Biochemistry

Cell Culture on Silicon Nitride Membranes and Cryopreparation for Synchrotron X-ray Fluorescence Nano-analysis
Caroline Bissardon 1, Solveig Reymond 1, Murielle Salomé 2, Lionel André 2, Sam Bayat 1, Peter Cloetens 2, Sylvain Bohic 1,2
1Inserm, UA7, Synchrotron Radiation for Biomedicine (STROBE), Université Grenoble Alpes, 2ID16A Beamline, ESRF, The European Synchrotron

Presented here is a protocol for cell culture on silicon nitride membranes and plunge-freezing prior to X-ray fluorescence imaging with a synchrotron cryogenic X-ray nanoprobe. When only room temperature nano-analysis is provided, the frozen samples can be further freeze-dried. These are critical steps to obtain information on the intracellular elemental composition.

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Chemistry

Biological Samples Preparation for Speciation at Cryogenic Temperature using High-Resolution X-Ray Absorption Spectroscopy
Caroline Bissardon 1, Marie-Pierre Isaure 2, Emmanuel Lesuisse 3, Mauro Rovezzi 4,5, Eric Lahera 4,5, Olivier Proux 4,5, Sylvain Bohic 1,6
1University Grenoble Alpes, INSERM UA7, Synchrotron Radiation for Biomedicine (STROBE), 2CNRS, UMR 5254, Université Pau & Pays Adour, E2S UPPA, Institut des Sciences Analytiques et de Physicochimie pour l'Environnement et les Matériaux, 3Institut Jacques Monod, UMR 7592 CNRS, Université Paris Diderot, 4OSUG, UMS 832 CNRS, Université Grenoble Alpes, 5FAME and FAME-UHD beamlines, ESRF, the European Synchrotron, 6ID16A beamline, ESRF, the European Synchrotron

This protocol presents a detailed procedure to prepare biological cryosamples for synchrotron-based X-ray absorption spectroscopy experiments. We describe all the steps required to optimize sample preparation and cryopreservation with examples of the protocol with cancer and phytoplankton cells. This method provides a universal standard of sample cryo-preparation.

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Biology

Optimization of Crystal Growth for Neutron Macromolecular Crystallography
Elham Vahdatahar 1, Niels Junius 1,2, Monika Budayova - Spano 1
1CEA, CNRS, IBS, Université Grenoble Alpes, 2ELVESYS SAS

Structural studies of biomacromolecules by crystallography require high-quality crystals. Here we demonstrate a protocol that can be used by OptiCrys (a fully automated instrument developed in our lab) and/or microdialysis buttons for growing large high-quality crystals based on knowledge of the crystallization phase diagram.

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Biochemistry

High-Resolution Neutron Spectroscopy to Study Picosecond-Nanosecond Dynamics of Proteins and Hydration Water
Kevin Pounot 1,2, Markus Appel 2, Christian Beck 1,2, Martin Weik 3, Giorgio Schirò 3, Yann Fichou 4, Tilo Seydel 2, Frank Schreiber 1
1Institut für Angewandte Physik, Universität Tübingen, 2Institut Max von Laue - Paul Langevin (ILL), 3Institut de Biologie Structurale, Université Grenoble Alpes, 4Institut Européen de Chimie et Biologie, Bordeaux INP, Chimie et Biologie des Membranes et des Nanoobjets (CBMN), Université de Bordeaux

Neutron backscattering spectroscopy offers a nondestructive and label-free access to the ps-ns dynamics of proteins and their hydration water. The workflow is presented with two studies on amyloid proteins: on the time-resolved dynamics of lysozyme during aggregation and on the hydration water dynamics of tau upon fiber formation.

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