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Department of Microbiology
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The zinc-finger protein CNBP is required for forebrain formation in the mouse.
Development (Cambridge, England) Apr, 2003 | Pubmed ID: 12588852
Coping with viral diversity in HIV vaccine design.
PLoS computational biology Apr, 2007 | Pubmed ID: 17465674
ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets.
Bioinformatics (Oxford, England) Sep, 2007 | Pubmed ID: 17586542
Recognition of HIV-1 peptides by host CTL is related to HIV-1 similarity to human proteins.
PloS one , 2007 | Pubmed ID: 17786195
Broad and Gag-biased HIV-1 epitope repertoires are associated with lower viral loads.
PloS one , 2008 | Pubmed ID: 18183304
Env length and N-linked glycosylation following transmission of human immunodeficiency virus Type 1 subtype B viruses.
Virology May, 2008 | Pubmed ID: 18314154
Rare HLA drive additional HIV evolution compared to more frequent alleles.
AIDS research and human retroviruses Mar, 2009 | Pubmed ID: 19327049
HIV-1 superinfection in the antiretroviral therapy era: are seroconcordant sexual partners at risk?
PloS one , 2009 | Pubmed ID: 19479055
Conserved HIV-1 epitopes continuously elicit subdominant cytotoxic T-lymphocyte responses.
The Journal of infectious diseases Dec, 2009 | Pubmed ID: 19909083
Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1.
Molecular biology and evolution Apr, 2010 | Pubmed ID: 19955476
DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites.
BioTechniques May, 2010 | Pubmed ID: 20569214
Amino-acid co-variation in HIV-1 Gag subtype C: HLA-mediated selection pressure and compensatory dynamics.
PloS one , 2010 | Pubmed ID: 20824187
HIV-1 envelope subregion length variation during disease progression.
PLoS pathogens , 2010 | Pubmed ID: 21187897
Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial.
Nature medicine Mar, 2011 | Pubmed ID: 21358627
Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial.
PloS one , 2011 | Pubmed ID: 21399681
Increased breadth and depth of cytotoxic T lymphocytes responses against HIV-1-B Nef by inclusion of epitope variant sequences.
PloS one , 2011 | Pubmed ID: 21464919
Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes.
Journal of virology Aug, 2011 | Pubmed ID: 21593162
Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2.
Nature Oct, 2012 | Pubmed ID: 22960785
Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data.
Bioinformatics (Oxford, England) Oct, 2013 | Pubmed ID: 23900188
Quality score based identification and correction of pyrosequencing errors.
PloS one , 2013 | Pubmed ID: 24039850
Improved detection of rare HIV-1 variants using 454 pyrosequencing.
PloS one , 2013 | Pubmed ID: 24098517
Validation of an oligonucleotide ligation assay for quantification of human immunodeficiency virus type 1 drug-resistant mutants by use of massively parallel sequencing.
Journal of clinical microbiology Jul, 2014 | Pubmed ID: 24740080
Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial.
Journal of virology Aug, 2014 | Pubmed ID: 24829343
CD8 and CD4 epitope predictions in RV144: no strong evidence of a T-cell driven sieve effect in HIV-1 breakthrough sequences from trial participants.
PloS one , 2014 | Pubmed ID: 25350851
Performance of commonly used genotypic assays and comparison with phenotypic assays of HIV-1 coreceptor tropism in acutely HIV-1-infected patients.
The Journal of antimicrobial chemotherapy May, 2015 | Pubmed ID: 25608585
University of Washington
Siriphan Manocheewa1,
Erinn C. Lanxon-Cookson1,
Yi Liu1,
J. Victor Swain1,
Jan McClure1,
Ushnal Rao1,
Brandon Maust1,
Wenjie Deng1,
Justine E. Sunshine1,
Moon Kim1,
Morgane Rolland3,4,
James I. Mullins1,2
1Department of Microbiology, University of Washington,
2Departments of Medicine and Laboratory Medicine, University of Washington,
3U.S Military HIV Research Program, Walter Reed Army Institute of Research,
4, Henry M. Jackson Foundation
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