Division of Medicine,
Department of Public Health and Clinical Medicine,
Division of Medicine, Department of Public Health and Clinical Medicine
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Use of two-dimensional gels in yeast proteomics.
Methods in enzymology , 2002 | Pubmed ID: 12073336
Warping two-dimensional electrophoresis gel images to correct for geometric distortions of the spot pattern.
Electrophoresis Jun, 2002 | Pubmed ID: 12179995
Dihydroxyacetone kinases in Saccharomyces cerevisiae are involved in detoxification of dihydroxyacetone.
The Journal of biological chemistry Jan, 2003 | Pubmed ID: 12401799
Cloning, sequencing and characterization of a gene encoding dihydroxyacetone kinase from Zygosaccharomyces rouxii NRRL2547.
Yeast (Chichester, England) Dec, 2002 | Pubmed ID: 12478592
Automated screening in environmental arrays allows analysis of quantitative phenotypic profiles in Saccharomyces cerevisiae.
Yeast (Chichester, England) Jan, 2003 | Pubmed ID: 12489126
Ser3p (Yer081wp) and Ser33p (Yil074cp) are phosphoglycerate dehydrogenases in Saccharomyces cerevisiae.
The Journal of biological chemistry Mar, 2003 | Pubmed ID: 12525494
Visible trends in functional genomics.
Functional & integrative genomics Jul, 2003 | Pubmed ID: 12743830
Fragmentation of dihydroxyacetone kinase 1 from Saccharomyces cerevisiae indicates a two-domain structure.
Proteomics May, 2003 | Pubmed ID: 12748953
NADH-reductive stress in Saccharomyces cerevisiae induces the expression of the minor isoform of glyceraldehyde-3-phosphate dehydrogenase (TDH1).
Current genetics Feb, 2004 | Pubmed ID: 14652693
High-resolution yeast phenomics resolves different physiological features in the saline response.
Proceedings of the National Academy of Sciences of the United States of America Dec, 2003 | Pubmed ID: 14676322
Health effects of acute exposure to air pollution. Part I: Healthy and asthmatic subjects exposed to diesel exhaust.
Research report (Health Effects Institute) Dec, 2003 | Pubmed ID: 14738208
An in vitro and in vivo investigation of the effects of diesel exhaust on human airway lining fluid antioxidants.
Archives of biochemistry and biophysics Mar, 2004 | Pubmed ID: 14871482
The stress-induced Tfs1p requires NatB-mediated acetylation to inhibit carboxypeptidase Y and to regulate the protein kinase A pathway.
The Journal of biological chemistry Sep, 2004 | Pubmed ID: 15229224
Diesel exhaust exposure enhances the expression of IL-13 in the bronchial epithelium of healthy subjects.
Respiratory medicine Sep, 2004 | Pubmed ID: 15338792
Statistical exploration of variation in quantitative two-dimensional gel electrophoresis data.
Proteomics Dec, 2004 | Pubmed ID: 15378705
Schizosaccharomyces pombe ER oxidoreductin-like proteins SpEro1a p and SpEro1b p.
Yeast (Chichester, England) Sep, 2004 | Pubmed ID: 15449306
Pulmonary epithelial integrity in children: relationship to ambient ozone exposure and swimming pool attendance.
Environmental health perspectives Dec, 2004 | Pubmed ID: 15579425
PROPHECY--a database for high-resolution phenomics.
Nucleic acids research Jan, 2005 | Pubmed ID: 15608218
Diesel exhaust activates redox-sensitive transcription factors and kinases in human airways.
American journal of physiology. Lung cellular and molecular physiology Nov, 2005 | Pubmed ID: 15749742
Diesel exhaust inhalation causes vascular dysfunction and impaired endogenous fibrinolysis.
Circulation Dec, 2005 | Pubmed ID: 16365212
Physiological importance and identification of novel targets for the N-terminal acetyltransferase NatB.
Eukaryotic cell Feb, 2006 | Pubmed ID: 16467477
Genetic pleiotropy in Saccharomyces cerevisiae quantified by high-resolution phenotypic profiling.
Molecular genetics and genomics : MGG Jun, 2006 | Pubmed ID: 16534619
Involvement of yeast YOL151W/GRE2 in ergosterol metabolism.
Yeast (Chichester, England) Apr, 2006 | Pubmed ID: 16598690
Dihydroxyacetone detoxification in Saccharomyces cerevisiae involves formaldehyde dissimilation.
Molecular microbiology May, 2006 | Pubmed ID: 16677304
Vitamin supplementation does not protect against symptoms in ozone-responsive subjects.
Free radical biology & medicine May, 2006 | Pubmed ID: 16767844
Phenotypic effects of membrane protein overexpression in Saccharomyces cerevisiae.
Proceedings of the National Academy of Sciences of the United States of America Jul, 2006 | Pubmed ID: 16847257
Evolutionary constraints on yeast protein size.
BMC evolutionary biology Aug, 2006 | Pubmed ID: 16911784
Exploring the time dependence of serum clara cell protein as a biomarker of pulmonary injury in humans.
Chest Sep, 2006 | Pubmed ID: 16963661
PROPHECY--a yeast phenome database, update 2006.
Nucleic acids research Jan, 2007 | Pubmed ID: 17148481
Ozone enhances the airway inflammation initiated by diesel exhaust.
Respiratory medicine Jun, 2007 | Pubmed ID: 17196810
Persistent endothelial dysfunction in humans after diesel exhaust inhalation.
American journal of respiratory and critical care medicine Aug, 2007 | Pubmed ID: 17446340
Bronchoalveolar matrix metalloproteinase 9 relates to restrictive lung function impairment in systemic sclerosis.
Respiratory medicine Oct, 2007 | Pubmed ID: 17643278
Ischemic and thrombotic effects of dilute diesel-exhaust inhalation in men with coronary heart disease.
The New England journal of medicine Sep, 2007 | Pubmed ID: 17855668
Air pollution and atherothrombosis.
Inhalation toxicology , 2007 | Pubmed ID: 17886055
Dihydroxyacetone-induced death is accompanied by advanced glycation endproduct formation in selected proteins of Saccharomyces cerevisiae and Caenorhabditis elegans.
Proteomics Oct, 2007 | Pubmed ID: 17890650
Comparative proteomics of industrial lager yeast reveals differential expression of the cerevisiae and non-cerevisiae parts of their genomes.
Proteomics Nov, 2007 | Pubmed ID: 17994632
Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping.
RNA (New York, N.Y.) Apr, 2008 | Pubmed ID: 18256246
Exposure to diesel exhaust induces changes in EEG in human volunteers.
Particle and fibre toxicology Mar, 2008 | Pubmed ID: 18334019
The sodium pump Ena1p provides mechanistic insight into the salt sensitivity of vacuolar protein sorting mutants.
Biochimica et biophysica acta Jun, 2008 | Pubmed ID: 18395523
Diesel exhaust increases EGFR and phosphorylated C-terminal Tyr 1173 in the bronchial epithelium.
Particle and fibre toxicology May, 2008 | Pubmed ID: 18460189
Exposure to concentrated ambient particles does not affect vascular function in patients with coronary heart disease.
Environmental health perspectives Jun, 2008 | Pubmed ID: 18560524
Deposition of biomass combustion aerosol particles in the human respiratory tract.
Inhalation toxicology Aug, 2008 | Pubmed ID: 18668412
Reply to comment on Cruts et al. (2008), "Exposure to diesel exhaust induces changes in EEG in human volunteers" by Valberg et al.
Particle and fibre toxicology Aug, 2008 | Pubmed ID: 18673578
Increased intraepithelial T-cells in stable COPD.
Respiratory medicine Dec, 2008 | Pubmed ID: 18706796
Chemogenetic fingerprinting by analysis of cellular growth dynamics.
BMC chemical biology Aug, 2008 | Pubmed ID: 18721464
Suppressed signal transduction in the bronchial epithelium of patients with systemic sclerosis.
Respiratory medicine Feb, 2009 | Pubmed ID: 18819788
Diesel exhaust inhalation increases thrombus formation in man.
European heart journal Dec, 2008 | Pubmed ID: 18952612
Augmentation of respiratory tract lining fluid ascorbate concentrations through supplementation with vitamin C.
Inhalation toxicology Feb, 2009 | Pubmed ID: 19009458
Adverse cardiovascular effects of air pollution.
Nature clinical practice. Cardiovascular medicine Jan, 2009 | Pubmed ID: 19029991
Population genomics of domestic and wild yeasts.
Nature Mar, 2009 | Pubmed ID: 19212322
Experimental exposure to diesel exhaust increases arterial stiffness in man.
Particle and fibre toxicology Mar, 2009 | Pubmed ID: 19284640
Testing of chromosomal clumping of gene properties.
Statistical applications in genetics and molecular biology , 2009 | Pubmed ID: 19341353
Influence of smoking cessation on airway T lymphocyte subsets in COPD.
COPD Apr, 2009 | Pubmed ID: 19378224
Allantoin in human plasma, serum, and nasal-lining fluids as a biomarker of oxidative stress: avoiding artifacts and establishing real in vivo concentrations.
Antioxidants & redox signaling Aug, 2009 | Pubmed ID: 19388825
Antioxidant responses to acute ozone challenge in the healthy human airway.
Inhalation toxicology Sep, 2009 | Pubmed ID: 19459773
Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway.
Molecular systems biology , 2009 | Pubmed ID: 19536204
A phenotypic study of TFS1 mutants differentially altered in the inhibition of Ira2p or CPY.
FEMS yeast research Sep, 2009 | Pubmed ID: 19552705
Investigations on light-induced stress in fluorescence microscopy using nuclear localization of the transcription factor Msn2p as a reporter.
FEMS yeast research Sep, 2009 | Pubmed ID: 19566686
Early suppression of NFkappaB and IL-8 in bronchial epithelium after ozone exposure in healthy human subjects.
Inhalation toxicology Sep, 2009 | Pubmed ID: 19681731
Contribution of endothelin 1 to the vascular effects of diesel exhaust inhalation in humans.
Hypertension (Dallas, Tex. : 1979) Oct, 2009 | Pubmed ID: 19687345
Exposure to nitrogen dioxide is not associated with vascular dysfunction in man.
Inhalation toxicology Feb, 2010 | Pubmed ID: 20047363
Octopamine receptors from the barnacle balanus improvisus are activated by the alpha2-adrenoceptor agonist medetomidine.
Molecular pharmacology Aug, 2010 | Pubmed ID: 20488921
Impaired vascular function after exposure to diesel exhaust generated at urban transient running conditions.
Particle and fibre toxicology Jul, 2010 | Pubmed ID: 20653945
Sulfate assimilation mediates tellurite reduction and toxicity in Saccharomyces cerevisiae.
Eukaryotic cell Oct, 2010 | Pubmed ID: 20675578
Antioxidant airway responses following experimental exposure to wood smoke in man.
Particle and fibre toxicology Aug, 2010 | Pubmed ID: 20727160
Evolutionary loss of 8-oxo-G repair components among eukaryotes.
Genome integrity Sep, 2010 | Pubmed ID: 20809962
Proinflammatory doses of diesel exhaust in healthy subjects fail to elicit equivalent or augmented airway inflammation in subjects with asthma.
Thorax Jan, 2011 | Pubmed ID: 20837873
Cytotoxic T cells expressing the co-stimulatory receptor NKG2 D are increased in cigarette smoking and COPD.
Respiratory research Sep, 2010 | Pubmed ID: 20863413
Diesel exhaust inhalation does not affect heart rhythm or heart rate variability.
Heart (British Cardiac Society) Apr, 2011 | Pubmed ID: 20962342
Measuring growth rate in high-throughput growth phenotyping.
Current opinion in biotechnology Feb, 2011 | Pubmed ID: 21095113
Airway inflammatory response to diesel exhaust generated at urban cycle running conditions.
Inhalation toxicology Dec, 2010 | Pubmed ID: 21110774
Continuous light exposure causes cumulative stress that affects the localization oscillation dynamics of the transcription factor Msn2p.
Biochimica et biophysica acta Feb, 2011 | Pubmed ID: 21167216
Assessing the complex architecture of polygenic traits in diverged yeast populations.
Molecular ecology Apr, 2011 | Pubmed ID: 21261765
Presence of activated airway T lymphocytes in human puumala hantavirus disease.
Chest Sep, 2011 | Pubmed ID: 21436245
Systematic exploration of essential yeast gene function with temperature-sensitive mutants.
Nature biotechnology Apr, 2011 | Pubmed ID: 21441928
Particle traps prevent adverse vascular and prothrombotic effects of diesel engine exhaust inhalation in men.
Circulation Apr, 2011 | Pubmed ID: 21482966
Expansion of CD4+CD25+ helper T cells without regulatory function in smoking and COPD.
Respiratory research Jun, 2011 | Pubmed ID: 21651772
Trait variation in yeast is defined by population history.
PLoS genetics Jun, 2011 | Pubmed ID: 21698134
Combustion-derived nanoparticulate induces the adverse vascular effects of diesel exhaust inhalation.
European heart journal Nov, 2011 | Pubmed ID: 21753226
The Ashbya gossypii EF-1α promoter of the ubiquitously used MX cassettes is toxic to Saccharomyces cerevisiae.
FEBS letters Dec, 2011 | Pubmed ID: 22033143
Life history shapes trait heredity by accumulation of loss-of-function alleles in yeast.
Molecular biology and evolution Jul, 2012 | Pubmed ID: 22319169
A Geographically Diverse Collection of Schizosaccharomyces pombe Isolates Shows Limited Phenotypic Variation but Extensive Karyotypic Diversity.
G3 (Bethesda, Md.) Dec, 2011 | Pubmed ID: 22384373
Update in environmental and occupational medicine 2011.
American journal of respiratory and critical care medicine Jun, 2012 | Pubmed ID: 22661522
Experimental determination of the respiratory tract deposition of diesel combustion particles in patients with chronic obstructive pulmonary disease.
Particle and fibre toxicology Jul, 2012 | Pubmed ID: 22839109
Lung function in volunteers before and after exposure to trichloramine in indoor pool environments and asthma in a cohort of pool workers.
BMJ open , 2012 | Pubmed ID: 23048058
The yeast transcription factor Crz1 is activated by light in a Ca2+/calcineurin-dependent and PKA-independent manner.
PloS one , 2013 | Pubmed ID: 23335962
Altered nitric oxide bioavailability contributes to diesel exhaust inhalation-induced cardiovascular dysfunction in man.
Journal of the American Heart Association Feb, 2013 | Pubmed ID: 23525434
Ancient evolutionary trade-offs between yeast ploidy states.
PLoS genetics Mar, 2013 | Pubmed ID: 23555297
Diesel exhaust but not ozone increases fraction of exhaled nitric oxide in a randomized controlled experimental exposure study of healthy human subjects.
Environmental health : a global access science source Apr, 2013 | Pubmed ID: 23602059
Exposure to wood smoke increases arterial stiffness and decreases heart rate variability in humans.
Particle and fibre toxicology Jun, 2013 | Pubmed ID: 23742058
Detection of ligand-receptor binding using microfluidic frontal affinity chromatography on proteoliposomes derived directly from native cell membranes.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences Jul, 2013 | Pubmed ID: 23770737
Update in environmental and occupational medicine 2012.
American journal of respiratory and critical care medicine Jul, 2013 | Pubmed ID: 23815719
Short-term exposure to ozone does not impair vascular function or affect heart rate variability in healthy young men.
Toxicological sciences : an official journal of the Society of Toxicology Oct, 2013 | Pubmed ID: 23872581
Lipid mediator profiles differ between lung compartments in asthmatic and healthy humans.
The European respiratory journal Feb, 2014 | Pubmed ID: 24036245
Molecular characterization of the α-subunit of Na⁺/K⁺ ATPase from the euryhaline barnacle Balanus improvisus reveals multiple genes and differential expression of alternative splice variants.
PloS one , 2013 | Pubmed ID: 24130836
Cardiopulmonary involvement in Puumala hantavirus infection.
BMC infectious diseases Oct, 2013 | Pubmed ID: 24160911
Peripheral blood neutrophilia as a biomarker of ozone-induced pulmonary inflammation.
PloS one , 2013 | Pubmed ID: 24391708
Assessment of the capacity of vehicle cabin air inlet filters to reduce diesel exhaust-induced symptoms in human volunteers.
Environmental health : a global access science source Mar, 2014 | Pubmed ID: 24621126
Controlled exposures to air pollutants and risk of cardiac arrhythmia.
Environmental health perspectives Jul, 2014 | Pubmed ID: 24667535
Importance of plasticity and local adaptation for coping with changing salinity in coastal areas: a test case with barnacles in the Baltic Sea.
BMC evolutionary biology Jul, 2014 | Pubmed ID: 25038588
Metagenomics reveals that detoxification systems are underrepresented in marine bacterial communities.
BMC genomics Sep, 2014 | Pubmed ID: 25179155
Concerted evolution of life stage performances signals recent selection on yeast nitrogen use.
Molecular biology and evolution Jan, 2015 | Pubmed ID: 25349282
Respiratory Tract Deposition of Inhaled Wood Smoke Particles in Healthy Volunteers.
Journal of aerosol medicine and pulmonary drug delivery Aug, 2015 | Pubmed ID: 25393443
Effect of wood smoke exposure on vascular function and thrombus formation in healthy fire fighters.
Particle and fibre toxicology Dec, 2014 | Pubmed ID: 25487196
High-throughput biochemical fingerprinting of Saccharomyces cerevisiae by Fourier transform infrared spectroscopy.
PloS one , 2015 | Pubmed ID: 25706524
Serum metalloproteinase-9 is related to COPD severity and symptoms - cross-sectional data from a population based cohort-study.
Respiratory research Feb, 2015 | Pubmed ID: 25849664
Identification of vitamin C transporters in the human airways: a cross-sectional in vivo study.
BMJ open Apr, 2015 | Pubmed ID: 25854967
Atmospheric interactions and cardiac arrhythmias: Langrish et al. respond.
Environmental health perspectives Jun, 2015 | Pubmed ID: 26029956
Health impacts of anthropogenic biomass burning in the developed world.
The European respiratory journal Dec, 2015 | Pubmed ID: 26405285
Acute exposure to wood smoke from incomplete combustion--indications of cytotoxicity.
Particle and fibre toxicology Oct, 2015 | Pubmed ID: 26511835
Cigarette smoke-induced induction of antioxidant enzyme activities in airway leukocytes is absent in active smokers with COPD.
European clinical respiratory journal , 2015 | Pubmed ID: 26557249
Central arterial stiffness is increased among subjects with severe and very severe COPD: report from a population-based cohort study.
European clinical respiratory journal , 2015 | Pubmed ID: 26557263
Diesel exhaust augments allergen-induced lower airway inflammation in allergic individuals: a controlled human exposure study.
Thorax Jan, 2016 | Pubmed ID: 26574583
Ischemic heart disease among subjects with and without chronic obstructive pulmonary disease--ECG-findings in a population-based cohort study.
BMC pulmonary medicine Dec, 2015 | Pubmed ID: 26637314
Enrichment of immunoregulatory proteins in the biomolecular corona of nanoparticles within human respiratory tract lining fluid.
Nanomedicine : nanotechnology, biology, and medicine May, 2016 | Pubmed ID: 26767511
The Story of a Hitchhiker: Population Genetic Patterns in the Invasive Barnacle Balanus(Amphibalanus) improvisus Darwin 1854.
PloS one , 2016 | Pubmed ID: 26821161
Multi-platform metabolomics assays for human lung lavage fluids in an air pollution exposure study.
Analytical and bioanalytical chemistry Jul, 2016 | Pubmed ID: 27113461
Dendritic Cells and Monocytes with Distinct Inflammatory Responses Reside in Lung Mucosa of Healthy Humans.
Journal of immunology (Baltimore, Md. : 1950) Jun, 2016 | Pubmed ID: 27183618
Vital capacity and COPD: the Swedish CArdioPulmonary bioImage Study (SCAPIS).
International journal of chronic obstructive pulmonary disease , 2016 | Pubmed ID: 27194908
PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth phenomics.
BMC bioinformatics Jun, 2016 | Pubmed ID: 27334112
Scan-o-matic: High-Resolution Microbial Phenomics at a Massive Scale.
G3 (Bethesda, Md.) Sep, 2016 | Pubmed ID: 27371952
DNA Extraction Protocols for Whole-Genome Sequencing in Marine Organisms.
Methods in molecular biology (Clifton, N.J.) , 2016 | Pubmed ID: 27460368
Structures, Properties, and Dynamics of Intermediates in eEF2-Diphthamide Biosynthesis.
Journal of chemical information and modeling Sep, 2016 | Pubmed ID: 27525663
Occupational lung diseases: from old and novel exposures to effective preventive strategies.
The Lancet. Respiratory medicine Jan, 2017 | Pubmed ID: 28089118
The mitochondrial genome sequences of the round goby and the sand goby reveal patterns of recent evolution in gobiid fish.
BMC genomics 02, 2017 | Pubmed ID: 28209125
Analysis of aquaporins from the euryhaline barnacle Balanus improvisus reveals differential expression in response to changes in salinity.
PloS one , 2017 | Pubmed ID: 28715506
Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.
NPJ systems biology and applications , 2016 | Pubmed ID: 28725471
Isolation and Laboratory Domestication of Natural Yeast Strains.
Cold Spring Harbor protocols Aug, 2017 | Pubmed ID: 28765292
Mapping Quantitative Trait Loci in Yeast.
Cold Spring Harbor protocols Aug, 2017 | Pubmed ID: 28765293
Yeast Reciprocal Hemizygosity to Confirm the Causality of a Quantitative Trait Loci-Associated Gene.
Cold Spring Harbor protocols Aug, 2017 | Pubmed ID: 28765294
Budding Yeast Strains and Genotype-Phenotype Mapping.
Cold Spring Harbor protocols Aug, 2017 | Pubmed ID: 28765302
Ischemic ECG abnormalities are associated with an increased risk for death among subjects with COPD, also among those without known heart disease.
International journal of chronic obstructive pulmonary disease , 2017 | Pubmed ID: 28860744