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Department of Computational Medicine and Bioinformatics
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A dynamic Bayesian network approach to protein secondary structure prediction.
BMC bioinformatics Jan, 2008 | Pubmed ID: 18218144
Key residue-dominated protein folding dynamics.
Biochemical and biophysical research communications Aug, 2008 | Pubmed ID: 18549806
Water-protein interplay reveals the specificity of alpha-lytic protease.
Biochemical and biophysical research communications Jul, 2009 | Pubmed ID: 19450547
Water dynamics clue to key residues in protein folding.
Biochemical and biophysical research communications Jan, 2010 | Pubmed ID: 20059982
Drug export and allosteric coupling in a multidrug transporter revealed by molecular simulations.
Nature communications Nov, 2010 | Pubmed ID: 21081915
Drug uptake pathways of multidrug transporter AcrB studied by molecular simulations and site-directed mutagenesis experiments.
Journal of the American Chemical Society May, 2013 | Pubmed ID: 23627437
Domain-opening and dynamic coupling in the α-subunit of heterotrimeric G proteins.
Biophysical journal Jul, 2013 | Pubmed ID: 23870276
Integrating protein structural dynamics and evolutionary analysis with Bio3D.
BMC bioinformatics Dec, 2014 | Pubmed ID: 25491031
Mapping the Processivity Determinants of the Kinesin-3 Motor Domain.
Biophysical journal Oct, 2015 | Pubmed ID: 26488644
CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work.
Journal of chemical theory and computation Jun, 2011 | Pubmed ID: 26596457
Dynamic Coupling and Allosteric Networks in the α Subunit of Heterotrimeric G Proteins.
The Journal of biological chemistry Feb, 2016 | Pubmed ID: 26703464
Rapid Characterization of Allosteric Networks with Ensemble Normal Mode Analysis.
The journal of physical chemistry. B Aug, 2016 | Pubmed ID: 27056373
Online interactive analysis of protein structure ensembles with Bio3D-web.
Bioinformatics (Oxford, England) Nov, 2016 | Pubmed ID: 27423893
Structural and Molecular Mechanisms of Cytokine-Mediated Endocrine Resistance in Human Breast Cancer Cells.
Molecular cell Mar, 2017 | Pubmed ID: 28306507
University of Michigan Medical School
Shashank Jariwala*,1,
Lars Skjærven*,2,
Xin-Qiu Yao1,
Barry J. Grant1
1Department of Computational Medicine and Bioinformatics, University of Michigan Medical School,
2Department of Biomedicine, University of Bergen
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