New Features in Visual Dynamics 3.0Ivo Henrique Provensi Vieira 1,2, Esdras Abimael Maia Mendonça 1,2, Fernando Loza Guariero 1,2, Railton Marques de Souza Guimarães 1,2, Fernando Berton Zanchi 1,2,3,4
1Bioinformatics and Medicinal Chemistry Laboratory (LABIOQUIM), Oswaldo Cruz Rondônia Foundation, 2National Institute of Epidemiology in the Western Amazon - EPIAMO, 3Postgraduate Program in Experimental Biology, Federal University of Rondônia (UNIR), 4Doctoral Program in Sciences - IOC/Fiocruz Rondônia Cooperation: Computational Biology and Systems (BCS)
Visual Dynamics is an open-source tool that accelerates implementations and learning in molecular dynamics simulation using Gromacs. The presented protocol will guide you through the steps to perform a protein-ligand simulation prepared in ACPYPE with ease and general steps to other simulation models.
