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GCC Center for Advanced Microscopy and Image Informatics

1 ARTICLES PUBLISHED IN JoVE

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Biochemistry

Single Cell Analysis Of Transcriptionally Active Alleles By Single Molecule FISH
Ragini M. Mistry 1,2, Pankaj K. Singh 1,3, Maureen G. Mancini 1,2, Fabio Stossi 1,2, Michael A. Mancini 1,2,3,4
1GCC Center for Advanced Microscopy and Image Informatics, 2Department of Molecular and Cellular Biology, Baylor College of Medicine, 3Center for Translational Cancer Research, Institute of Biosciences and Technology, Texas A&M University, 4Department of Pharmacology and Chemical Biology, Baylor College of Medicine

Single molecule RNA fluorescence in situ hybridization (smFISH) is a method to accurately quantify levels and localization of specific RNAs at the single cell level. Here, we report our validated lab protocols for wet-bench processing, imaging and image analysis for single cell quantification of specific RNAs.

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