Brandon Maust

ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets.

HIV-1 over time: fitness loss or robustness gain?

HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load.

Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS.

DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites.

Amino-acid co-variation in HIV-1 Gag subtype C: HLA-mediated selection pressure and compensatory dynamics.

Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial.

Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes.

Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission.

Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2.

Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data.

Factors affecting relative fitness measurements in pairwise competition assays of human immunodeficiency viruses.

Improved detection of rare HIV-1 variants using 454 pyrosequencing.

Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial.

CD8 and CD4 epitope predictions in RV144: no strong evidence of a T-cell driven sieve effect in HIV-1 breakthrough sequences from trial participants.