Department of Mathematics and Statistics
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Metagenomic analyses of an uncultured viral community from human feces.
Journal of bacteriology Oct, 2003 | Pubmed ID: 14526037
Diversity and population structure of a near-shore marine-sediment viral community.
Proceedings. Biological sciences / The Royal Society Mar, 2004 | Pubmed ID: 15156913
PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information.
BMC bioinformatics , 2005 | Pubmed ID: 15743531
A diffusion approach to labeling rows and columns in an irregular array.
Medical image analysis Apr, 2006 | Pubmed ID: 16213781
The marine viromes of four oceanic regions.
PLoS biology Nov, 2006 | Pubmed ID: 17090214
Power law rank-abundance models for marine phage communities.
FEMS microbiology letters Aug, 2007 | Pubmed ID: 17559407
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil.
Applied and environmental microbiology Nov, 2007 | Pubmed ID: 17827313
Viral diversity and dynamics in an infant gut.
Research in microbiology Jun, 2008 | Pubmed ID: 18541415
Viral and microbial community dynamics in four aquatic environments.
The ISME journal Jun, 2010 | Pubmed ID: 20147985
Assessing coral reefs on a Pacific-wide scale using the microbialization score.
PloS one , 2012 | Pubmed ID: 22970122
Reference-independent comparative metagenomics using cross-assembly: crAss.
Bioinformatics (Oxford, England) Dec, 2012 | Pubmed ID: 23074261
The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography.
American journal of respiratory and critical care medicine Jun, 2014 | Pubmed ID: 24702670
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes.
Nature communications , 2014 | Pubmed ID: 25058116
Savannah E. Sanchez1,
Daniel A. Cuevas2,
Jason E. Rostron1,
Tiffany Y. Liang3,
Cullen G. Pivaroff1,
Matthew R. Haynes1,
Jim Nulton4,
Ben Felts4,
Barbara A. Bailey4,
Peter Salamon4,
Robert A. Edwards1,5,6,
Alex B. Burgin7,
Anca M. Segall1,
Forest Rohwer1
1Department of Biology, San Diego State University,
2Computational Science Research Center, San Diego State University,
3Bioinformatics and Medical Informatics Research Center, San Diego State University,
4Department of Mathematics and Statistics, San Diego State University,
5Department of Computer Science, San Diego State University,
6Mathematics and Computer Science Division, Argonne National Laboratory,
7SPARC Committee, Broad Institute
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