Department of Biology
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Identifying functional relationships within sets of co-expressed genes by combining upstream regulatory motif analysis and gene expression information.
BMC genomics , 2010 | Pubmed ID: 21047389
Developmentally-related candidate retinoic acid target genes regulated early during neuronal differentiation of human embryonal carcinoma.
Oncogene Apr, 2002 | Pubmed ID: 11973648
Single-cell analysis reveals cell-specific patterns of expression of a family of putative voltage-gated sodium channel genes in the leech.
Journal of neurobiology Jun, 2003 | Pubmed ID: 12717704
Using desktop cloning software to plan, track, and evaluate cloning projects.
Methods in molecular biology (Clifton, N.J.) , 2003 | Pubmed ID: 12904654
The impact of topical cyclosporine A emulsion 0.05% on the outcomes of patients with keratoconjunctivitis sicca.
Current medical research and opinion Jul, 2005 | Pubmed ID: 16004673
Bounded search for de novo identification of degenerate cis-regulatory elements.
BMC bioinformatics , 2006 | Pubmed ID: 16700920
BEAM: a beam search algorithm for the identification of cis-regulatory elements in groups of genes.
Journal of computational biology : a journal of computational molecular cell biology Apr, 2006 | Pubmed ID: 16706719
Phosphate-dependent modulation of c-di-GMP levels regulates Pseudomonas fluorescens Pf0-1 biofilm formation by controlling secretion of the adhesin LapA.
Molecular microbiology Feb, 2007 | Pubmed ID: 17302799
SPACER: identification of cis-regulatory elements with non-contiguous critical residues.
Bioinformatics (Oxford, England) Apr, 2007 | Pubmed ID: 17470480
SCOPE: a web server for practical de novo motif discovery.
Nucleic acids research Jul, 2007 | Pubmed ID: 17485471
A novel ensemble learning method for de novo computational identification of DNA binding sites.
BMC bioinformatics , 2007 | Pubmed ID: 17626633
Identification of TTP mRNA targets in human dendritic cells reveals TTP as a critical regulator of dendritic cell maturation.
RNA (New York, N.Y.) May, 2008 | Pubmed ID: 18367721
Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora.
The EMBO journal Apr, 2009 | Pubmed ID: 19262566
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