Martin Eisenacher

Sense and nonsense of pathway analysis software in proteomics.

FE65 regulates and interacts with the Bloom syndrome protein in dynamic nuclear spheres - potential relevance to Alzheimer's disease.

Improving the default data analysis workflow for large autoimmune biomarker discovery studies with ProtoArrays.

Redox Proteomics uncovers peroxynitrite-sensitive proteins that help Escherichia coli to overcome nitrosative stress.

Individual profiling of circulating tumor cell composition and therapeutic outcome in patients with hepatocellular carcinoma.

Detection of patient subgroups with differential expression in omics data: a comprehensive comparison of univariate measures.

Amyloid beta a4 precursor protein-binding family B member 1 (FE65) interactomics revealed synaptic vesicle glycoprotein 2A (SV2A) and sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (SERCA2) as new binding proteins in the human brain.

Computational proteomics in the post-identification era.

Highly immunoreactive IgG antibodies directed against a set of twenty human proteins in the sera of patients with amyotrophic lateral sclerosis identified by protein array.

Autoimmune profiling with protein microarrays in clinical applications.

Developing new methods to answer old and new questions in neurodegenerative diseases: 21(st) Workshop of the HUPO Brain Proteome Project (HBPP) 23-24 January 2014, Honolulu, Hawaii.

The challenge of on-tissue digestion for MALDI MSI- a comparison of different protocols to improve imaging experiments.

Low-bias phosphopeptide enrichment from scarce samples using plastic antibodies.

Circulating U2 small nuclear RNA fragments as a diagnostic and prognostic biomarker in lung cancer patients.

PAA: an R/bioconductor package for biomarker discovery with protein microarrays.

Flow cytometric characterization of microglia in the offspring of PolyI:C treated mice.

Shotgun proteomic analysis of Yersinia ruckeri strains under normal and iron-limited conditions.

Proteomics of rimmed vacuoles define new risk allele in inclusion body myositis.

Comprehensive proteomic analysis of Penicillium verrucosum.

The Human Proteome Organization-Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry.

Spatial and molecular resolution of diffuse malignant mesothelioma heterogeneity by integrating label-free FTIR imaging, laser capture microdissection and proteomics.

BioInfra.Prot: A comprehensive proteomics workflow including data standardization, protein inference, expression analysis and data publication.

A community proposal to integrate proteomics activities in ELIXIR.

MicroRNA-30c as a novel diagnostic biomarker for primary and secondary B-cell lymphoma of the CNS.

Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry.

The PRIDE database and related tools and resources in 2019: improving support for quantification data.

Direct-acting antivirals-based therapy decreases hepatic fibrosis serum biomarker microfibrillar-associated protein 4 in hepatitis C patients.

Protein Inference Using PIA Workflows and PSI Standard File Formats.

Protein variability in cerebrospinal fluid and its possible implications for neurological protein biomarker research.

Integrated Fourier Transform Infrared Imaging and Proteomics for Identification of a Candidate Histochemical Biomarker in Bladder Cancer.

Noninvasive diagnosis of urothelial cancer in urine using DNA hypermethylation signatures-Gender matters.

Monocytes-neutrophils-ratio as predictive marker for failure of first induction therapy in AML.

Proteomics Standards Initiative Extended FASTA Format.

Digital droplet PCR-based chimerism analysis for monitoring of hematopoietic engraftment after allogeneic stem cell transplantation.

Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition.

Let me infuse this for you - A way to solve the first YPIC challenge.

CalibraCurve: A Tool for Calibration of Targeted MS-Based Measurements.

Spatial proteomics revealed a CXCL1-dependent crosstalk between the urothelium and relocated macrophages through IL-6 during an acute bacterial infection in the urinary bladder.

Quantitative analysis of proteome dynamics in a mouse model of asthma.

Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.

MaCPepDB: A Database to Quickly Access All Tryptic Peptides of the UniProtKB.

Small RNAs as biomarkers to differentiate benign and malign prostate diseases: An alternative for transrectal punch biopsy of the prostate?

Important Issues in Planning a Proteomics Experiment: Statistical Considerations of Quantitative Proteomic Data.

Establishing a Custom-Fit Data-Independent Acquisition Method for Label-Free Proteomics.

Computertomography-Based Prediction of Complete Response Following Neoadjuvant Chemoradiotherapy of Locally Advanced Rectal Cancer.

Advanced Fiber Type-Specific Protein Profiles Derived from Adult Murine Skeletal Muscle.

A proteomics sample metadata representation for multiomics integration and big data analysis.

The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.

NTRK1/TrkA Signaling in Neuroblastoma Cells Induces Nuclear Reorganization and Intra-Nuclear Aggregation of Lamin A/C.