Genome Sciences Department
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Genome-scale co-evolutionary inference identifies functions and clients of bacterial Hsp90.
PLoS genetics , 2013 | Pubmed ID: 23874229
Background-dependent effects of polyglutamine variation in the Arabidopsis thaliana gene ELF3.
Proceedings of the National Academy of Sciences of the United States of America Nov, 2012 | Pubmed ID: 23129635
Lessons from model organisms: phenotypic robustness and missing heritability in complex disease.
PLoS genetics , 2012 | Pubmed ID: 23166511
Molecular mechanisms of robustness in plants.
Current opinion in plant biology Feb, 2013 | Pubmed ID: 23279801
The protein chaperone HSP90 can facilitate the divergence of gene duplicates.
Genetics Apr, 2013 | Pubmed ID: 23410833
GC-rich DNA elements enable replication origin activity in the methylotrophic yeast Pichia pastoris.
PLoS genetics Mar, 2014 | Pubmed ID: 24603708
Medicine. Combating evolution to fight disease.
Science (New York, N.Y.) Mar, 2014 | Pubmed ID: 24604189
The conserved PFT1 tandem repeat is crucial for proper flowering in Arabidopsis thaliana.
Genetics Oct, 2014 | Pubmed ID: 25116137
The overdue promise of short tandem repeat variation for heritability.
Trends in genetics : TIG Nov, 2014 | Pubmed ID: 25182195
Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana.
Cell reports Sep, 2014 | Pubmed ID: 25220462
Hsp90 promotes kinase evolution.
Molecular biology and evolution Jan, 2015 | Pubmed ID: 25246701
MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals.
Genome research May, 2015 | Pubmed ID: 25659649
A Genome-Wide Association Analysis Reveals Epistatic Cancellation of Additive Genetic Variance for Root Length in Arabidopsis thaliana.
PLoS genetics , 2015 | Pubmed ID: 26397943
Molecular mechanisms governing differential robustness of development and environmental responses in plants.
Annals of botany Apr, 2016 | Pubmed ID: 26473020
The Mechanistic Underpinnings of an ago1-Mediated, Environmentally Dependent, and Stochastic Phenotype.
Plant physiology Apr, 2016 | Pubmed ID: 26872948
Evolutionary assembly patterns of prokaryotic genomes.
Genome research Jun, 2016 | Pubmed ID: 27197212
PIF4 and ELF3 Act Independently in Arabidopsis thaliana Thermoresponsive Flowering.
PloS one , 2016 | Pubmed ID: 27564448
Variability in a Short Tandem Repeat Mediates Complex Epistatic Interactions in Arabidopsis thaliana.
Genetics Jan, 2017 | Pubmed ID: 27866166
Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules.
The Plant cell Jan, 2018 | Pubmed ID: 29229750
It's not magic - Hsp90 and its effects on genetic and epigenetic variation.
Seminars in cell & developmental biology Apr, 2019 | Pubmed ID: 29807130
Massive variation of short tandem repeats with functional consequences across strains of .
Genome research Aug, 2018 | Pubmed ID: 29970452
Preferences in a trait decision determined by transcription factor variants.
Proceedings of the National Academy of Sciences of the United States of America Aug, 2018 | Pubmed ID: 30068600
HSP90 Contributes to Entrainment of the Circadian Clock via the Morning Loop.
Genetics Dec, 2018 | Pubmed ID: 30337341
Redundancy, Feedback, and Robustness in the Gene Family.
Frontiers in genetics , 2018 | Pubmed ID: 30542366
Bacteria-to-Human Protein Networks Reveal Origins of Endogenous DNA Damage.
Cell Jan, 2019 | Pubmed ID: 30633903
Substitutions Are Boring: Some Arguments about Parallel Mutations and High Mutation Rates.
Trends in genetics : TIG Apr, 2019 | Pubmed ID: 30797597
Dynamics of Gene Expression in Single Root Cells of .
The Plant cell May, 2019 | Pubmed ID: 30923229
High-throughput identification of dominant negative polypeptides in yeast.
Nature methods May, 2019 | Pubmed ID: 30962621
Challenges and Approaches to Genotyping Repetitive DNA.
G3 (Bethesda, Md.) Jan, 2020 | Pubmed ID: 31757929
Mapping and Dynamics of Regulatory DNA in Maturing Siliques.
Frontiers in plant science , 2019 | Pubmed ID: 31798605
Binding and Regulation of Transcription by Yeast Ste12 Variants To Drive Mating and Invasion Phenotypes.
Genetics Feb, 2020 | Pubmed ID: 31810988
Dimensionality reduction by UMAP to visualize physical and genetic interactions.
Nature communications Mar, 2020 | Pubmed ID: 32210240
Identification of Plant Enhancers and Their Constituent Elements by STARR-seq in Tobacco Leaves.
The Plant cell Jul, 2020 | Pubmed ID: 32409318
Thousands of high-quality sequencing samples fail to show meaningful correlation between 5S and 45S ribosomal DNA arrays in humans.
Scientific reports Jan, 2021 | Pubmed ID: 33432083
Anno genominis XX: 20 years of Arabidopsis genomics.
The Plant cell May, 2021 | Pubmed ID: 33793861
A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana.
The Plant cell Aug, 2021 | Pubmed ID: 33822225
Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters.
Nature plants Jun, 2021 | Pubmed ID: 34083762
The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution.
Nature communications Jun, 2021 | Pubmed ID: 34099698
First discovered, long out of sight, finally visible: ribosomal DNA.
Trends in genetics : TIG Jun, 2022 | Pubmed ID: 35272860
AGO1 and HSP90 buffer different genetic variants in Arabidopsis thaliana.
Genetics Feb, 2023 | Pubmed ID: 36303325
Dynamic chromatin accessibility deploys heterotypic cis/trans-acting factors driving stomatal cell-fate commitment.
Nature plants Dec, 2022 | Pubmed ID: 36522450
Ribosomal DNA replication time coordinates completion of genome replication and anaphase in yeast.
Cell reports Mar, 2023 | Pubmed ID: 36842087
Substantial rDNA copy number reductions alter timing of development and produce variable tissue-specific phenotypes in C. elegans.
Genetics May, 2023 | Pubmed ID: 36919976
Optimization of ATAC-seq in wheat seedling roots using INTACT-isolated nuclei.
BMC plant biology May, 2023 | Pubmed ID: 37211599
Decreasing expression increases phenotypic variation in early seedling traits of .
bioRxiv : the preprint server for biology May, 2023 | Pubmed ID: 37214854
Frontiers and techniques in plant gene regulation.
Current opinion in plant biology Jun, 2023 | Pubmed ID: 37331209
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