Jeffrey E. Barrick

Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host.

Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture.

Nanostructured hybrid transparent conductive films with antibacterial properties.

Draft genome sequences of two Campylobacter jejuni clinical isolates, NW and D2600.

Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load.

Physical model of the immune response of bacteria against bacteriophage through the adaptive CRISPR-Cas immune system.

Decaffeination and measurement of caffeine content by addicted Escherichia coli with a refactored N-demethylation operon from Pseudomonas putida CBB5.

Caffeine junkie: an unprecedented glutathione S-transferase-dependent oxygenase required for caffeine degradation by Pseudomonas putida CBB5.

Recursive genomewide recombination and sequencing reveals a key refinement step in the evolution of a metabolic innovation in Escherichia coli.

Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness.

Engineering reduced evolutionary potential for synthetic biology.

Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq.

Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli.

Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq.

Predicting growth conditions from internal metabolic fluxes in an in-silico model of E. coli.

Genome instability mediates the loss of key traits by Acinetobacter baylyi ADP1 during laboratory evolution.

The case for decoupling assembly and submission standards to maintain a more flexible registry of biological parts.

Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq.

Rapid evolution of silver nanoparticle resistance in Escherichia coli.

Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli.

Draft Genome Sequence of the Bacterium Pseudomonas putida CBB5, Which Can Utilize Caffeine as a Sole Carbon and Nitrogen Source.

Predicting the Genetic Stability of Engineered DNA Sequences with the EFM Calculator.

The Molecular and Genetic Basis of Repeatable Coevolution between Escherichia coli and Bacteriophage T3 in a Laboratory Microcosm.

Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment.

Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation.

Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment.

Expanded Genetic Codes Create New Mutational Routes to Rifampicin Resistance in Escherichia coli.

Tempo and mode of genome evolution in a 50,000-generation experiment.

Emergence of a Competence-Reducing Filamentous Phage from the Genome of Acinetobacter baylyi ADP1.

Rapid and Inexpensive Evaluation of Nonstandard Amino Acid Incorporation in Escherichia coli.

Specificity of genome evolution in experimental populations of evolved at different temperatures.

Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions.

The E. coli molecular phenotype under different growth conditions.

Reduced Mutation Rate and Increased Transformability of Transposon-Free Acinetobacter baylyi ADP1-ISx.

Arresting Evolution.

Genetic Engineering of Bee Gut Microbiome Bacteria with a Toolkit for Modular Assembly of Broad-Host-Range Plasmids.

Innovation in an E. coli evolution experiment is contingent on maintaining adaptive potential until competition subsides.

Bacterial Production of Gellan Gum as a Do-It-Yourself Alternative to Agar.

Directed evolution of Escherichia coli with lower-than-natural plasmid mutation rates.

Synthetic Genome Defenses against Selfish DNA Elements Stabilize Engineered Bacteria against Evolutionary Failure.

Bioassay for Determining the Concentrations of Caffeine and Individual Methylxanthines in Complex Samples.

Evolution of satellite plasmids can prolong the maintenance of newly acquired accessory genes in bacteria.

Engineered symbionts activate honey bee immunity and limit pathogens.

Rapid and assured genetic engineering methods applied to Acinetobacter baylyi ADP1 genome streamlining.

Experimental Evolution of Leads to Loss of Motility, N (σ54) Deletion and Genome Reduction.

Engineering a Culturable Strain for Aphid Paratransgenesis.

Genomic evolution of antibiotic resistance is contingent on genetic background following a long-term experiment with .

Global Transcriptional Response of to Formaldehyde Stress Expands the Role of EfgA and Is Distinct from Antibiotic Translational Inhibition.

Insertion-sequence-mediated mutations both promote and constrain evolvability during a long-term experiment with bacteria.

Rates of gene conversions between Escherichia coli ribosomal operons.

pLannotate: engineered plasmid annotation.

Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance.

Engineering insects from the endosymbiont out.

High-throughput characterization of mutations in genes that drive clonal evolution using multiplex adaptome capture sequencing.

The Genomic Basis of Evolutionary Novelties in a Leafhopper.

Computational tests of a thermal cycling strategy to isolate more complex functional nucleic acid motifs from random sequence pools by in vitro selection.

OSTIR: open source translation initiation rate prediction.

Honey bee functional genomics using symbiont-mediated RNAi.

Electron Tomography and Machine Learning for Understanding the Highly Ordered Structure of Leafhopper Brochosomes.

Gut microbe Lactiplantibacillus plantarum undergoes different evolutionary trajectories between insects and mammals.

The Pathfinder plasmid toolkit for genetically engineering newly isolated bacteria enables the study of -colonizing .

Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences.

The Pathfinder plasmid toolkit for genetically engineering newly isolated bacteria enables the study of Drosophila-colonizing Orbaceae.