Subina Mehta

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.

Bridging the Chromosome-centric and Biology/Disease-driven Human Proteome Projects: Accessible and Automated Tools for Interpreting the Biological and Pathological Impact of Protein Sequence Variants Detected via Proteogenomics.

Update on the moFF Algorithm for Label-Free Quantitative Proteomics.

Improve your Galaxy text life: The Query Tabular Tool.

QuanTP: A Software Resource for Quantitative Proteo-Transcriptomic Comparative Data Analysis and Informatics.

The Galaxy Platform for Reproducible Affinity Proteomic Mass Spectrometry Data Analysis.

metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes.

Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration.

A Sectioning and Database Enrichment Approach for Improved Peptide Spectrum Matching in Large, Genome-Guided Protein Sequence Databases.

Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform.

Survey of metaproteomics software tools for functional microbiome analysis.

Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms.

Updates on metaQuantome Software for Quantitative Metaproteomics.

A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19).

A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19).

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework.

Quantitative Proteogenomic Characterization of Inflamed Murine Colon Tissue Using an Integrated Discovery, Verification, and Validation Proteogenomic Workflow.

Gut microbial β-glucuronidases regulate host luminal proteases and are depleted in irritable bowel syndrome.

Catching the Wave: Detecting Strain-Specific SARS-CoV-2 Peptides in Clinical Samples Collected during Infection Waves from Diverse Geographical Locations.

Galaxy Training: A powerful framework for teaching!

An optimized workflow for MS-based quantitative proteomics of challenging clinical bronchoalveolar lavage fluid (BALF) samples.

Integrative meta-omics in Galaxy and beyond.

Metaproteomic Analysis of Nasopharyngeal Swab Samples to Identify Microbial Peptides in COVID-19 Patients.

A Galaxy of informatics resources for MS-based proteomics.

A novel clinical metaproteomics workflow enables bioinformatic analysis of host-microbe dynamics in disease.

Novel Approach to Exploring Protease Activity and Targets in HIV-associated Obstructive Lung Disease using Combined Proteomic-Peptidomic Analysis.

An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease.

Metaproteomics for Coinfections in the Upper Respiratory Tract: The Case of COVID-19.

Novel approach to exploring protease activity and targets in HIV-associated obstructive lung disease using combined proteomic-peptidomic analysis.

Discovering Novel Proteoforms Using Proteogenomic Workflows Within the Galaxy Bioinformatics Platform.

Investigating proteogenomic divergence in patient-derived xenograft models of ovarian cancer.