The authors thank Robert Kelsh for kindly sharing the zebrafish sox10 promoter reagent.

1. Embryo Collection for Photoconversion
<ol>
	<li>Set up at least ten pairs of sox10: kaede transgenic zebrafish between 5 and 6pm in the evening.</li>
	<li>The next morning, pull dividers and collect eggs around noon. Transfer them to Petri dishes and put them into 28.5 &deg;C incubator.</li>
	<li>At around 24 hr post fertilization, clean the Petri dishes by removing dead embryos. Check the developmental stage of embryos 13 using light field microscopy and any fluorescent microscope with enhanced green fluorescent protein (EGFP) filter. Kaede will be visible through this filter.</li>
	<li>When embryos reach 60 hpf transfer five brightly fluorescent embryos into a separate Petri dish and dechorionate them if necessary.</li>
</ol>
2. Mounting of Embryo for Photoconversion
<ol>
	<li>Mount the embryo using a normal fluorescent microscope. Mounting of embryos on confocal microscope is extremely challenging.</li>
	<li>Use standard E3 water or prepare fresh E3 using the following recipe: 
	Add the following per one liter of distilled water dH2O add the following to make 1x E3L: 
	0.292 g 5.0 mM NaCl 
	0.013 g 0.17mM KCl 
	0.044 g 0.33mM CaCl2 (desiccant, 96%, A.C.S. reagent) 
	0.081 g .33mM MgSO4 (anhydrated) 
	Optional: add 200 &#956;l of 0.05% methylene blue to 1X E3 as a fungicide and stir. 
	Medium keeps at room temperature for 1 week.</li>
	<li>Use standard tricaine or prepare tricaine using following recipe: 
	For 5 L of 0.2% tricaine mix the following ingredients: 
	45 ml tris-Cl (1M pH9.5) 
	5 L H2O 
	10 g tricaine</li>
	<li>Prepare 'movie juice' (50 ml E3, 0.015% tricaine solution), by adding 3.75 ml 0.2% tricaine to 46.25 ml E3.</li>
	<li>Prepare agarose by mixing 46.25 ml E3 water with 46.35 mg low melting point (LMP) agarose in a 50 ml glass flask and dissolve solid particles by microwaving. Then add 3.73 ml 0.2% tricaine to agarose and put glass flask with agarose into 50 &deg;C water bath until usage.</li>
</ol>
3. Preparation and Mounting of Embryo
<ol>
	<li>Anesthetize embryos with E3/0.015% tricaine solution made in step 1.1.2 and transfer embryo to chamber slide.</li>
	<li>Soak up all excess E3 with paper tissue and the put agarose onto embryo.</li>
	<li>Position embryo perfectly dorsal with microloader tips. Make sure the whole embryo does not float on top of the agarose, but push the whole body down. Then pour E3/0.015% tricaine solution over agarose embedded embryo until chamber is fully filled with fluid.</li>
</ol>
4. Adjusting Software Settings on Confocal Microscope
<ol>
	<li>Use 20X air immersible objective (numerical aperture 0.75; pinhole size 20) for focusing the embryo. Then press the L100 light button on the microscope and select channels in software. Open the icons view/acquisition controls/A1settings and click the confocal setup button. Next click &#39;auto&#39; and select following channels before closing the window again: 
	Ch1: DAPI channel- 403.4 nm (wave lengths between 350-410 nm can be used) 
	Ch2: 488.0 nm 
	Ch3: 561.9 nm</li>
</ol>
5. Photoconversion
<ol>
	<li>Turn off Ch1 and 3 and turn on Ch2 before clicking the remove interlock button and scanning.</li>
	<li>Focus on cells of interest for photoconversion, which is best done by starting with 1frame/sec and high voltage (HV) 200 and then going up in the frames/sec and lowering the HV accordingly until reaching 1/32 frames/sec and HV around 100-120, depending on the background noise.</li>
	<li>When the embryo is in focus, look on the right edge of screen, grab the green rim and make it smaller so it fits the area of interest for photoconversion and right click with the mouse. Smaller is better because the photoconversion is irreversible.</li>
	<li>Turn frames/sec to 1 and HV to 200 and hit scan. A zoomed in image of the area of photoconversion is now visible.</li>
	<li>Photoconvert cells by turning on Ch1 (403.4 nm). Expose to the photoconverting laser anywhere from 5-60 seconds, depending on size of the region until green kaede as seen through the GFP channel is nearly absent.</li>
	<li>When the green kaede signal is nearly absent, turn Ch1 off. Turn Ch2 and 3 on. Then click right onto window on A1 scan area field and hit &#39;return to original size&#39; to check if desired cells were photoconverted.</li>
</ol>
6. Making a Z-stack
<ol>
	<li>Find the icon &#39;capture Z-series&#39; in the menu bar and set upper and lower limits of Z-stack before starting it. Set LUTs.</li>
</ol>
7. Software- Settings Time-lapse
<ol>
	<li>Go to A1Simple GUI box and tick following settings: 
	1/32 frames/sec 
	size 1024 
	average 4 or 8X depending on the number of Z-stacks that has to be taken in one loop</li>
	<li>Go to: view/ acquisition controls/ ND sequence acquisition and set time frame (8-30min), click continuous and click Z-stack. Set borders as tested before and start movie.</li>
	<li>Keep adding E3/0.015% tricaine solution chamber slide throughout the day. At night, fill up chamber completely. That will last until the next morning.</li>
	<li>The next morning, refill E3/0.015% tricaine solution and check if embryo is still alive. Loss of fluorescence indicates death. Continue refills and checks throughout the day.</li>
	<li>When the structure has finished forming, or the embryo has died, finish the movie.</li>
</ol>
8. Post-production Processing
<ol>
	<li>Click &#39;show maximum intensity projection&#39; on tool bar, then right click on the image and create new document. The video is now visible in the best possible quality. Go on to delete frames that are not needed and adjust LUTs. Finally save as .avi. This format will be fine for Windows. For Mac download software to convert to .mov or .wmv.</li>
</ol>

<ol>
	<li>. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Prevalence+at+Birth+of+Cleft+Lip+With+or+Without+Cleft+Palate:+Data+From+the+International+Perinatal+Database+of+Typical+Oral+Clefts+(IPDTOC).">Prevalence at Birth of Cleft Lip With or Without Cleft Palate: Data From the International Perinatal Database of Typical Oral Clefts (IPDTOC).</a> Cleft Palate Craniofac. J. 48 (1), 66-81 (2011).</li><li>Dixon, M. J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cleft+lip+and+palate:+understanding+genetic+and+environmental+influences.">Cleft lip and palate: understanding genetic and environmental influences.</a> Nat. Rev. Genet. 12 (3), 167-178 (2011).</li><li>Mangold, E., Ludwig, K. U., Nothen, M. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Breakthroughs+in+the+genetics+of+orofacial+clefting.">Breakthroughs in the genetics of orofacial clefting.</a> Trends Mol. Med. 17 (12), 725-733 (2011).</li><li>Kimmel, C. B., Miller, C. T., Moens, C. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Specification+and+morphogenesis+of+the+zebrafish+larval+head+skeleton.">Specification and morphogenesis of the zebrafish larval head skeleton.</a> Dev. Biol. 233 (2), 239-257 (2001).</li><li>Dougherty, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Embryonic+Fate+Map+of+First+Pharyngeal+Arch+Structures+in+the+sox10:+kaede+Zebrafish+Transgenic+Model.">Embryonic Fate Map of First Pharyngeal Arch Structures in the sox10: kaede Zebrafish Transgenic Model.</a> J. Craniofac. Surg. 23 (5), 1333-1337 (2012).</li><li>Trainor, P. A., Krumlauf, R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hox+genes,+neural+crest+cells+and+branchial+arch+patterning.">Hox genes, neural crest cells and branchial arch patterning.</a> Curr. Opin. Cell Biol. 13 (6), 698-705 (2001).</li><li>Schilling, T. F., Kimmel, C. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Segment+and+cell+type+lineage+restrictions+during+pharyngeal+arch+development+in+the+zebrafish+embryo.">Segment and cell type lineage restrictions during pharyngeal arch development in the zebrafish embryo.</a> Development. 120 (3), 483-494 (1994).</li><li>Swartz, M. E., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Examination+of+a+palatogenic+gene+program+in+zebrafish.">Examination of a palatogenic gene program in zebrafish.</a> Dev. Dyn. 240 (9), 2204-2220 (2011).</li><li>McCollum, C. W., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Developmental+toxicity+screening+in+zebrafish.+Birth+Defects+Res.">Developmental toxicity screening in zebrafish. Birth Defects Res.</a> C. Embryo Today. 93 (2), 67-114 (2011).</li><li>Wada, N., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hedgehog+signaling+is+required+for+cranial+neural+crest+morphogenesis+and+chondrogenesis+at+the+midline+in+the+zebrafish+skull.">Hedgehog signaling is required for cranial neural crest morphogenesis and chondrogenesis at the midline in the zebrafish skull.</a> Development. 132 (17), 3977-3988 (2005).</li><li>Eberhart, J. K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Early+Hedgehog+signaling+from+neural+to+oral+epithelium+organizes+anterior+craniofacial+development.">Early Hedgehog signaling from neural to oral epithelium organizes anterior craniofacial development.</a> Development. 133 (6), 1069-1077 (2006).</li><li>Ando, R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=An+optical+marker+based+on+the+UV-induced+green-to-red+photoconversion+of+a+fluorescent+protein.">An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein.</a> Proc. Natl. Acad. Sci. U S A. 99 (20), 12651-12656 (2002).</li><li>Kimmel, C. B., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Stages+of+embryonic+development+of+the+zebrafish.">Stages of embryonic development of the zebrafish.</a> Dev. Dyn. 203 (3), 253-310 (1993).</li><li>Kawakami, A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+zebrafish-secreted+matrix+protein+you/scube2+is+implicated+in+long-range+regulation+of+hedgehog+signaling.">The zebrafish-secreted matrix protein you/scube2 is implicated in long-range regulation of hedgehog signaling.</a> Curr. Biol. 15 (5), 480-488 (2005).</li><li>Lombardo, V. A., Sporbert, A., Abdelilah-Seyfried, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cell+tracking+using+photoconvertible+proteins+during+zebrafish+development.">Cell tracking using photoconvertible proteins during zebrafish development.</a> J. Vis. Exp. (67), e4350 (2012).</li></ol>

The authors declare that they have no competing financial interests.

Here a new method for visualization of craniofacial development in the zebrafish model is shown. The sox10: kaede transgenic zebrafish line has been successfully used to describe the migratory pattern of CNCC in detail is used as a model organism 5.
Previous studies have used gross landmarks such as the eye to target cells and have relied on kaede mRNA injection, photoconversion assays or caged fluorescein dextran for photoconversion 10, 11, 14, 15 .The sox:10 kaede trans...

Orofacial clefts represent the most prevalent craniofacial deformity, with 1/700-1,000 deliveries affected 1. Disruption of early embryological craniofacial development can lead to formation of cleft lip and palate (CL/P). While causes for syndromic cleft have been largely shown, the genetic and epigenetic bases of nonsyndromic forms of orofacial clefting still need to be uncovered 2-4. In order to understand the etiology and pathogenesis of these malformations, it is necessary to elucidate the development of craniofacial structures on a cellular basis.
In all vertebrate species cranial neural crest cells (CNCC) migrate from the dorsal neural tube to populate the pharyngeal arches, which will contribute to formation of orofacial structures. Disruption of early embryological neural crest development can lead to formation of craniofacial malformations including CL/P 5-7.
In addition to structural similarities between zebrafish and mammalian craniofacial development (CNCCs reside in homologous regions), the gene regulatory network is highly conserved. It has also been shown that CNCCs develop in the same fashion between amniote species and zebrafish 8, making the zebrafish a powerful organism for the study of developmental and genetic basis of CL/P. It has many advantages, including small size, rapid and ex-utero embryonic development, and high breeding rates. Moreover, the embryo is optically transparent, making it amenable to observation of complex developmental events under the microscope 9. It is an ideal animal model for the study of migration and differentiation of cranial neural crest cells.
Expanding on previously published work 8, 10, 11, the migratory pattern of CNCC was described in detail using the sox10: kaede transgenic model 5. Kaede is a photo- convertible protein that turns from green to red after photo activation and makes it possible to trace CNCCs precisely. During this transformation the peptide backbone is cleaved, suggesting that the conversion is stable, meaning the cells can be tracked to their final destination 12. Transgenic lines labeled with kaede under transcriptional control of sox10 showed that the amniote palate and the ethmoid plate of zebrafish are formed homologously by fusion of bilateral maxillary prominences (MXP) with the frontonasal prominence (FNP) and that the Y shaped fusion seam is analogous between species.
Among other applications, the sox10: kaede transgenic zebrafish model was used to generate videos of zebrafish embryos at different developmental stages to show formation of normal and abnormal craniofacial structures. Photoconversion of specific groups of cells makes it possible to track their development. With this method an approach to create live imaging of developing craniofacial structures in zebrafish is introduced, making it easy to visually demonstrate this complex developmental process.
This protocol is aimed at sharing the experience of generating these videos using the normal development of the ethmoid plate in sox10: kaede transgenic zebrafish as an example. This protocol can further be applied to making time-lapse videos of any structure derived from cranial neural crest cells in zebrafish.

<table border="1">
	<tbody>
		<tr>
			<td>Name of Reagent/Material</td>
			<td>Company</td>
			<td>Catalog Number</td>
			<td>Comments</td>
		</tr>
		<tr>
			<td>sox10: kaede transgenic zebrafish line</td>
			<td>MGH</td>
			<td></td>
			<td>Available via the Liao lab</td>
		</tr>
		<tr>
			<td>Petri dishes 100x15 mm</td>
			<td>BD Falcon</td>
			<td>351029</td>
			<td></td>
		</tr>
		<tr>
			<td>Petri dishes 35 mmx10 mm</td>
			<td>BD Falcon</td>
			<td>351008</td>
			<td></td>
		</tr>
		<tr>
			<td>Ultrapure Low melting point (LMP) Agarose</td>
			<td>Invitrogen</td>
			<td>15517022</td>
			<td></td>
		</tr>
		<tr>
			<td>Lab Tek 2 Chamber SlideSystem</td>
			<td>LabTek</td>
			<td>154453</td>
			<td></td>
		</tr>
		<tr>
			<td>Microloaders 200/pk</td>
			<td>Fisher</td>
			<td>E5242956003</td>
			<td></td>
		</tr>
		<tr>
			<td>Nikon A1R Si Confocal Ti series</td>
			<td>Nikon</td>
			<td>No Catalog number</td>
			<td></td>
		</tr>
		<tr>
			<td>NIS Elements Software AR3.2 64-bit</td>
			<td>Nikon</td>
			<td>No Catalog number</td>
			<td></td>
		</tr>
	</tbody>
</table>

visualization of craniofacial development in the sox10: kaede transgenic zebrafish line using time-lapse confocal microscopy

Vertebrate palatogenesis is a highly choreographed and complex developmental process, which involves migration of cranial neural crest (CNC) cells, convergence and extension of facial prominences, and maturation of the craniofacial skeleton. To study the contribution of the cranial neural crest to specific regions of the zebrafish palate a sox10: kaede transgenic zebrafish line was generated. Sox10 provides lineage restriction of the kaede reporter protein to the neural crest, thereby making the cell labeling a more precise process than traditional dye or reporter mRNA injection. Kaede is a photo-convertible protein that turns from green to red after photo activation and makes it possible to follow cells precisely. The sox10: kaede transgenic line was used to perform lineage analysis to delineate CNC cell populations that give rise to maxillary versus mandibular elements and illustrate homology of facial prominences to amniotes. This protocol describes the steps to generate a live time-lapse video of a sox10: kaede zebrafish embryo. Development of the ethmoid plate will serve as a practical example. This protocol can be applied to making a time-lapse confocal recording of any kaede or similar photoconvertible reporter protein in transgenic zebrafish. Furthermore, it can be used to capture not only normal, but also abnormal development of craniofacial structures in the zebrafish mutants.

In the sox10: kaede transgenic line, migratory and post migratory CNCCs are labeled fluorescently green. The CNCC cells labeled with green fluorescent kaede recapitulate endogenous sox10 mRNA expression 5.
Among other applications, this animal model was used to better visualize the development of CNCC dependent craniofacial structures. Normal development of specific structures and also pathologic development of craniofacial malformations, especially cleft lip and palate have been ca...

Watch this Scientific Journal Video about Visualization of Craniofacial Development in the sox10: kaede Transgenic Zebrafish Line Using Time-lapse Confocal Microscopy at JoVE.com

Visualization of Craniofacial Development in the sox10: kaede Transgenic Zebrafish Line Using Time-lapse Confocal Microscopy

Visualization of experimental data has become a key element in presenting results to the scientific community. Generation of live time-lapse recording of growing embryos contributes to better presentation and understanding of complex developmental processes. This protocol is a step-by-step guide to cell labeling via photoconversion of kaede protein in zebrafish.

Vertebrate palatogenesis is a highly choreographed and complex developmental process, which involves migration of cranial neural crest (CNC) cells, ...

visualization-craniofacial-development-sox10-kaede-transgenic

Research

JoVE Journal

Biology

12.7K Views.  Massachusetts General Hospital. Visualization of experimental data has become a key element in presenting results to the scientific community. Generation of live time-lapse recording of growing embryos contributes to better presentation and understanding of complex developmental processes. This protocol is a step-by-step guide to cell labeling via photoconversion of kaede protein in zebrafish.