Michael Zhang

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression.

Late development of esophageal stricture following radiation and chemotherapy for small cell carcinoma of the lung: A case report.

Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells.

Loss of Bmx nonreceptor tyrosine kinase prevents pressure overload-induced cardiac hypertrophy.

High-resolution human core-promoter prediction with CoreBoost_HM.

Multi-stage analysis of gene expression and transcription regulation in C57/B6 mouse liver development.

The Seventh Asia Pacific Bioinformatics Conference (APBC2009).

Gene set-based module discovery in the breast cancer transcriptome.

Determination of enriched histone modifications in non-genic portions of the human genome.

The transcriptome of human CD34+ hematopoietic stem-progenitor cells.

An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia.

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing.

Updates to the RMAP short-read mapping software.

SFSSClass: an integrated approach for miRNA based tumor classification.

Transcriptome study for early hematopoiesis--achievement, challenge and new opportunity.

Development of the human cancer microRNA network.

Dissecting the unique role of the retinoblastoma tumor suppressor during cellular senescence.

Stress signaling by Tec tyrosine kinase in the ischemic myocardium.

Specialized compartments of cardiac nuclei exhibit distinct proteomic anatomy.

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Identification of an autophagy defect in smokers' alveolar macrophages.

Highly efficient purification of protein complexes from mammalian cells using a novel streptavidin-binding peptide and hexahistidine tandem tag system: application to Bruton's tyrosine kinase.

Combination of reverse transcription real-time polymerase chain reaction and antigen capture enzyme-linked immunosorbent assay for the detection of animals persistently infected with Bovine viral diarrhea virus.

An efficient DNA extraction method for polymerase chain reaction-based detection of Mycobacterium avium subspecies paratuberculosis in bovine fecal samples.

Biodegradable nanoparticles composed entirely of safe materials that rapidly penetrate human mucus.

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

The cardiac (pro)renin receptor is primarily expressed in myocyte transverse tubules and is increased in experimental diabetic cardiomyopathy.

Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes.

ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor.

Elevation of parathyroid hormone levels in atrial fibrillation.

Functional mutation of SMAC/DIABLO, encoding a mitochondrial proapoptotic protein, causes human progressive hearing loss DFNA64.

Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression.

Correlated evolution of transcription factors and their binding sites.

SpliceTrap: a method to quantify alternative splicing under single cellular conditions.

Diagnosis of Deerpox virus infection in a white-tailed deer (Odocoileus virginianus) fawn.

Study of FoxA pioneer factor at silent genes reveals Rfx-repressed enhancer at Cdx2 and a potential indicator of esophageal adenocarcinoma development.

Genetic variation in the alternative splicing regulator RBM20 is associated with dilated cardiomyopathy.

Aspergillus versicolor, a new causative agent of canine disseminated aspergillosis.

Integrating overlapping structures and background information of words significantly improves biological sequence comparison.

EpiRegNet: constructing epigenetic regulatory network from high throughput gene expression data for humans.

Loss-of-function germline GATA2 mutations in patients with MDS/AML or MonoMAC syndrome and primary lymphedema reveal a key role for GATA2 in the lymphatic vasculature.

Identification of tumor suppressors and oncogenes from genomic and epigenetic features in ovarian cancer.

Influenza A viral replication is blocked by inhibition of the inositol-requiring enzyme 1 (IRE1) stress pathway.

Identification of novel androgen-regulated pathways and mRNA isoforms through genome-wide exon-specific profiling of the LNCaP transcriptome.

Strandwise translocation of a DNA glycosylase on undamaged DNA.

A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information.

Cell-type-based analysis of microRNA profiles in the mouse brain.

Inferring haplotypes of copy number variations from high-throughput data with uncertainty.

Resolvins: anti-inflammatory and proresolving mediators derived from omega-3 polyunsaturated fatty acids.

Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM.

Streptococcus troglodytidis sp. nov., isolated from a foot abscess of a chimpanzee (Pan troglodytes).

H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence.

Microfluidic device for studying cell migration in single or co-existing chemical gradients and electric fields.

Purification and characterization of alkaline pectin lyase from a newly isolated Bacillus clausii and its application in elicitation of plant disease resistance.

Magnetic resonance imaging-based treatment planning for prostate brachytherapy.

Bivalent-like chromatin markers are predictive for transcription start site distribution in human.

Novel Markov model of induced pluripotency predicts gene expression changes in reprogramming.

Chromatin state and microRNA determine different gene expression dynamics responsive to TNF stimulation.

Genome-wide localization of protein-DNA binding and histone modification by a Bayesian change-point method with ChIP-seq data.

Regulatory elements of Caenorhabditis elegans ribosomal protein genes.

Growth and positioning of adipose-derived stem cells in microfluidic devices.

Proresolution therapy for the treatment of delayed healing of diabetic wounds.

Novel Foxo1-dependent transcriptional programs control T(reg) cell function.

New fusion transcripts identified in normal karyotype acute myeloid leukemia.

Major chromosomal breakpoint intervals in breast cancer co-localize with differentially methylated regions.

Structural and biochemical analysis of DNA helix invasion by the bacterial 8-oxoguanine DNA glycosylase MutM.

OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds.

Epigenomic analysis of multilineage differentiation of human embryonic stem cells.

Computational identification of active enhancers in model organisms.

DNA methylation data analysis and its application to cancer research.

Increased saturated fatty acids in obesity alter resolution of inflammation in part by stimulating prostaglandin production.

Influence of the US President's Emergency Plan for AIDS Relief (PEPfAR) on career choices and emigration of health-profession graduates from a Ugandan medical school: a cross-sectional study.

Two Distinct Categories of Focal Deletions in Cancer Genomes.

The effects of carbon dioxide and temperature on microRNA expression in Arabidopsis development.

ProteoMirExpress: inferring microRNA and protein-centered regulatory networks from high-throughput proteomic and mRNA expression data.

The transcription factor Foxo1 controls central-memory CD8+ T cell responses to infection.

Endophthalmitis in Cape Town, South Africa: are the data real?

FastDMA: an infinium humanmethylation450 beadchip analyzer.

CDKN2A/p16 Inactivation Mechanisms and Their Relationship to Smoke Exposure and Molecular Features in Non-Small-Cell Lung Cancer.

Integrated omics study delineates the dynamics of lipid droplets in Rhodococcus opacus PD630.

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.

Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells.

Epigenetic modification of MiR-429 promotes liver tumour-initiating cell properties by targeting Rb binding protein 4.

A novel trafficking-defective HCN4 mutation is associated with early-onset atrial fibrillation.

A compact microfluidic system for cell migration studies.

HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism.

Outcomes following malignant degeneration of benign vestibular schwannomas after stereotactic radiosurgery.

MIROR: a method for cell-type specific microRNA occupancy rate prediction.

Screening colonoscopy before prostate cancer treatment can detect colorectal cancers in asymptomatic patients and reduce the rate of complications after brachytherapy.

Nucleosome eviction and multiple co-factor binding predict estrogen-receptor-alpha-associated long-range interactions.

ModuleRole: a tool for modulization, role determination and visualization in protein-protein interaction networks.

Assembly and validation of versatile transcription activator-like effector libraries.

Chd5 orchestrates chromatin remodelling during sperm development.

Cultivable bacterial microbiota of northern bobwhite (Colinus virginianus): a new reservoir of antimicrobial resistance?

High-speed cannula detachment into the eye during hydrodissection.

Nanoparticle penetration of human cervicovaginal mucus: the effect of polyvinyl alcohol.

Distinct and predictive histone lysine acetylation patterns at promoters, enhancers, and gene bodies.

Is clinical performance adversely affected by wearing gloves during paediatric peripheral intravenous cannulation?

Intraoperative neuromonitoring in single-level spinal procedures: a retrospective propensity score-matched analysis in a national longitudinal database.

Hsa-miR-1246, hsa-miR-320a and hsa-miR-196b-5p inhibitors can reduce the cytotoxicity of Ebola virus glycoprotein in vitro.

Exome sequencing identifies a novel frameshift mutation of MYO6 as the cause of autosomal dominant nonsyndromic hearing loss in a Chinese family.

Genome-wide map of regulatory interactions in the human genome.

Resolving the genetic heterogeneity of prelingual hearing loss within one family: Performance comparison and application of two targeted next generation sequencing approaches.

Genomic analysis of bone marrow failure and myelodysplastic syndromes reveals phenotypic and diagnostic complexity.

Gene module based regulator inference identifying miR-139 as a tumor suppressor in colorectal cancer.

Genome Wide Mapping of Foxo1 Binding-sites in Murine T Lymphocytes.

Activity-dependent FUS dysregulation disrupts synaptic homeostasis.

CD151-α3β1 integrin complexes suppress ovarian tumor growth by repressing slug-mediated EMT and canonical Wnt signaling.

RanBP1 governs spindle assembly by defining mitotic Ran-GTP production.

A common set of distinct features that characterize noncoding RNAs across multiple species.

Surgeon Procedure Volume and Complication Rates in Anterior Cervical Discectomy and Fusions: Analysis of a National Longitudinal Database.

Cognitive function in older adults according to current socioeconomic status.

Germline ETV6 mutations in familial thrombocytopenia and hematologic malignancy.

Expression, purification, and in vitro comparative characterization of avian beta-defensin-2, -6, and -12.

Atf3 negatively regulates Ptgs2/Cox2 expression during acute inflammation.

Macrophages eat cancer cells using their own calreticulin as a guide: roles of TLR and Btk.

Integrative analysis of 111 reference human epigenomes.

Integrative analysis of haplotype-resolved epigenomes across human tissues.

Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit.

Paper and flexible substrates as materials for biosensing platforms to detect multiple biotargets.

Anterior Versus Posterior Approach for Multilevel Degenerative Cervical Disease: A Retrospective Propensity Score-Matched Study of the MarketScan Database.

Genome Modification in Enterococcus faecalis OG1RF Assessed by Bisulfite Sequencing and Single-Molecule Real-Time Sequencing.

ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks.

Design and bioinformatics analysis of genome-wide CLIP experiments.

A Microfluidic Platform for Evaluating Neutrophil Chemotaxis Induced by Sputum from COPD Patients.

Driving simulator evaluation of drivers' response to intersections with dynamic use of exit-lanes for left-turn.

Small C-terminal Domain Phosphatase 3 Dephosphorylates the Linker Sites of Receptor-regulated Smads (R-Smads) to Ensure Transforming Growth Factor β (TGFβ)-mediated Germ Layer Induction in Xenopus Embryos.

Epigenome-wide association of liver methylation patterns and complex metabolic traits in mice.

Differential connectivity of splicing activators and repressors to the human spliceosome.

Population dynamics of cancer cells with cell state conversions.

Germline ETV6 Mutations Confer Susceptibility to Acute Lymphoblastic Leukemia and Thrombocytopenia.

Galvanizing medical students in the administration of influenza vaccines: the Stanford Flu Crew.

Deep Brain Stimulation for Obesity.

Methyl jasmonate and its potential in cancer therapy.

Reconfigurable hybrid interface for molecular marker diagnostics and in-situ reporting.

Quantitative hydrophilic interaction chromatography-mass spectrometry analysis of N-acetylneuraminic acid and N-acetylmannosamine in human plasma.

Rapid Column-Free Enrichment of Mononuclear Cells from Solid Tissues.

Neural Placode Tissue Derived From Myelomeningocele Repair Serves as a Viable Source of Oligodendrocyte Progenitor Cells.

MICC: an R package for identifying chromatin interactions from ChIA-PET data.

Quantitative combination of natural anti-oxidants prevents metabolic syndrome by reducing oxidative stress.

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function.

Intracranial Dislocation of the Mandibular Condyle: A Case Report and Literature Review.

Bilhemia: A Rare Complication of Transjugular Intraheptic Portosytemic Shunt.

Long non-coding RNA expression profiles of hepatitis C virus-related dysplasia and hepatocellular carcinoma.

Histone Deacetylases Positively Regulate Transcription through the Elongation Machinery.

NONCODE 2016: an informative and valuable data source of long non-coding RNAs.

Retrosigmoid Versus Translabyrinthine Approach for Acoustic Neuroma Resection: An Assessment of Complications and Payments in a Longitudinal Administrative Database.

Fast dimension reduction and integrative clustering of multi-omics data using low-rank approximation: application to cancer molecular classification.

3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process.

Validation of SCT Methylation as a Hallmark Biomarker for Lung Cancers.

TBX5 mutations contribute to early-onset atrial fibrillation in Chinese and Caucasians.

Engineering long shelf life multi-layer biologically active surfaces on microfluidic devices for point of care applications.

Failed detection of Bovine viral diarrhea virus 2 subgenotype a (BVDV-2a) by direct fluorescent antibody test on tissue samples due to reduced reactivity of field isolates to raw anti-BVDV antibody.

Engineering EMT using 3D micro-scaffold to promote hepatic functions for drug hepatotoxicity evaluation.

De novo deciphering three-dimensional chromatin interaction and topological domains by wavelet transformation of epigenetic profiles.

Anti-CD47 Treatment Stimulates Phagocytosis of Glioblastoma by M1 and M2 Polarized Macrophages and Promotes M1 Polarized Macrophages In Vivo.

CyberKnife Stereotactic Radiosurgery for Atypical and Malignant Meningiomas.

Sharing Structure and Function in Biological Design with SBOL 2.0.

A Progenitor Cell Expressing Transcription Factor RORγt Generates All Human Innate Lymphoid Cell Subsets.

Required Reading: The Most Impactful Articles in Endoscopic Endonasal Skull Base Surgery.

FAT10 Is Critical in Influenza A Virus Replication by Inhibiting Type I IFN.

The Outcome of Hypofractionated Stereotactic Radiosurgery for Large Vestibular Schwannomas.

Glycerol Monolaurate (GML) inhibits human T cell signaling and function by disrupting lipid dynamics.

Meningioma Genomics: Diagnostic, Prognostic, and Therapeutic Applications.

Generation of Long-Lived Bone Marrow Plasma Cells Secreting Antibodies Specific for the HIV-1 gp41 Membrane-Proximal External Region in the Absence of Polyreactivity.

Resolvin D2 Enhances Postischemic Revascularization While Resolving Inflammation.

Analysis of C. elegans muscle transcriptome using trans-splicing-based RNA tagging (SRT).

Mammalian non-CG methylations are conserved and cell-type specific and may have been involved in the evolution of transposon elements.

Structure-function analysis of Avian β-defensin-6 and β-defensin-12: role of charge and disulfide bridges.

ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis.

Human Serum Albumin (HSA) Suppresses the Effects of Glycerol Monolaurate (GML) on Human T Cell Activation and Function.

Eradication of large established tumors in mice by combination immunotherapy that engages innate and adaptive immune responses.

A decade of age-related macular degeneration risk models: What have we learned from them and where are we going?

Lactobacillus colini sp. nov., isolated from Northern Bobwhite (Colinus virginianus).

Asymmetrical Intraocular Pressures and Asymmetrical Papilloedema in Pseudotumor Cerebri Syndrome.

MTGIpick allows robust identification of genomic islands from a single genome.

CyberKnife stereotactic radiosurgery for the treatment of symptomatic vertebral hemangiomas: a single-institution experience.

The eIF2-alpha kinase HRI is a novel therapeutic target in multiple myeloma.

Bell's palsy in children: Current treatment patterns in Australia and New Zealand. A PREDICT study.

Synthetic Biology Open Language (SBOL) Version 2.1.0.

Bell's Palsy in Children (BellPIC): protocol for a multicentre, placebo-controlled randomized trial.

Recurrently deregulated lncRNAs in hepatocellular carcinoma.

Spinal Disinhibition in Experimental and Clinical Painful Diabetic Neuropathy.

Novel synthetic analogues of avian β-defensin-12: the role of charge, hydrophobicity, and disulfide bridges in biological functions.

Erratum: Mammalian non-CG methylations are conserved and cell-type specific and may have been involved in the evolution of transposon elements.

Disrupting the CD47-SIRPα anti-phagocytic axis by a humanized anti-CD47 antibody is an efficacious treatment for malignant pediatric brain tumors.

Rapid and Low-Cost CRP Measurement by Integrating a Paper-Based Microfluidic Immunoassay with Smartphone (CRP-Chip).

Genome-wide analysis of the response to nitric oxide in uropathogenic Escherichia coli CFT073.

A dual-docking microfluidic cell migration assay (D(2)-Chip) for testing neutrophil chemotaxis and the memory effect.

SBOLDesigner 2: An Intuitive Tool for Structural Genetic Design.

Surgeon Adherence to Medical Ethics as Contingent on Their Leadership in the Changing Economics of Health Care.

Web3DMol: interactive protein structure visualization based on WebGL.

Super-resolution imaging of a 2.5 kb non-repetitive DNA in situ in the nuclear genome using molecular beacon probes.

DIRECTION: A machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes.

Surgeon Procedure Volume and Complication Rates in Anterior Cervical Discectomy and Fusions: Analysis of a National Longitudinal Database.

HCSGD: An integrated database of human cellular senescence genes.

A novel epigenetic AML1-ETO/THAP10/miR-383 mini-circuitry contributes to t(8;21) leukaemogenesis.

Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing.

Fibroblast growth factor 23 weakens chemotaxis of human blood neutrophils in microfluidic devices.