Jerry L. Prince
Department of Electrical and Computer Engineering,
Department of Computer Science
The Johns Hopkins University
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Cardiac motion tracking using CINE harmonic phase (HARP) magnetic resonance imaging.
Magnetic resonance in medicine Dec, 1999 | Pubmed ID: 10571926
Cortical reconstruction using implicit surface evolution: accuracy and precision analysis.
NeuroImage Feb, 2006 | Pubmed ID: 16269250
Measuring tongue motion from tagged cine-MRI using harmonic phase (HARP) processing.
The Journal of the Acoustical Society of America Jan, 2007 | Pubmed ID: 17297803
Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T.
NeuroImage Jul, 2007 | Pubmed ID: 17532649
Effects of signal-to-noise ratio on the accuracy and reproducibility of diffusion tensor imaging-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5 T.
Journal of magnetic resonance imaging : JMRI Sep, 2007 | Pubmed ID: 17729339
Diffusion tensor imaging at low SNR: nonmonotonic behaviors of tensor contrasts.
Magnetic resonance imaging Jul, 2008 | Pubmed ID: 18499378
Effect of oral appliances on genioglossus muscle tonicity seen with diffusion tensor imaging: a pilot study.
Oral surgery, oral medicine, oral pathology, oral radiology, and endodontics Mar, 2009 | Pubmed ID: 19217012
Robust deformable image registration using prior shape information for atlas to patient registration.
Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society Jan, 2010 | Pubmed ID: 19515532
Mjolnir: extending HAMMER using a diffusion transformation model and histogram equalization for deformable image registration.
International journal of biomedical imaging , 2009 | Pubmed ID: 19680457
AUTOMATICALLY IDENTIFYING WHITE MATTER TRACTS USING CORTICAL LABELS.
Proceedings. IEEE International Symposium on Biomedical Imaging May, 2008 | Pubmed ID: 20119500
A RICIAN MIXTURE MODEL CLASSIFICATION ALGORITHM FOR MAGNETIC RESONANCE IMAGES.
Proceedings. IEEE International Symposium on Biomedical Imaging , 2009 | Pubmed ID: 20126426
FUZZY C-MEANS WITH VARIABLE COMPACTNESS.
Proceedings. IEEE International Symposium on Biomedical Imaging , 2008 | Pubmed ID: 20126427
Diffusion tensor imaging reveals disease-specific deep cerebellar nuclear changes in cerebellar degeneration.
Journal of neurology Aug, 2010 | Pubmed ID: 20354716
Synthesizing MR Contrast and Resolution through a Patch Matching Technique.
Proceedings of SPIE--the International Society for Optical Engineering , 2010 | Pubmed ID: 20431709
Longitudinal changes in cortical thickness associated with normal aging.
NeuroImage Oct, 2010 | Pubmed ID: 20441796
Hybrid cone-beam tomographic reconstruction: incorporation of prior anatomical models to compensate for missing data.
IEEE transactions on medical imaging Jan, 2011 | Pubmed ID: 20667807
Multi-parametric neuroimaging reproducibility: a 3-T resource study.
NeuroImage Feb, 2011 | Pubmed ID: 21094686
MR CONTRAST SYNTHESIS FOR LESION SEGMENTATION.
Proceedings. IEEE International Symposium on Biomedical Imaging Jun, 2010 | Pubmed ID: 21132059
AUTOMATED RELIABLE LABELING OF THE CORTICAL SURFACE.
Proceedings. IEEE International Symposium on Biomedical Imaging May, 2008 | Pubmed ID: 21197379
Simple paradigm for extra-cerebral tissue removal: algorithm and analysis.
NeuroImage Jun, 2011 | Pubmed ID: 21458576
MRI shows a region-specific pattern of atrophy in spinocerebellar ataxia type 2.
Cerebellum (London, England) Mar, 2012 | Pubmed ID: 21850525
Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI.
NeuroImage Feb, 2012 | Pubmed ID: 22019877
Enhancement of mobile C-arm cone-beam reconstruction using prior anatomical models.
Proceedings of SPIE--the International Society for Optical Engineering , 2009 | Pubmed ID: 22190841
Principal component analysis of cerebellar shape on MRI separates SCA types 2 and 6 into two archetypal modes of degeneration.
Cerebellum (London, England) Dec, 2012 | Pubmed ID: 22258915
System for integrated neuroimaging analysis and processing of structure.
Neuroinformatics Jan, 2013 | Pubmed ID: 22932976
Distance Transforms in Multi Channel MR Image Registration.
Proceedings of SPIE--the International Society for Optical Engineering Mar, 2011 | Pubmed ID: 23503332
Segmentation of retinal OCT images using a random forest classifier.
Proceedings of SPIE--the International Society for Optical Engineering Mar, 2013 | Pubmed ID: 23710325
Retinal layer segmentation of macular OCT images using boundary classification.
Biomedical optics express Jul, 2013 | Pubmed ID: 23847738
Automatic magnetic resonance spinal cord segmentation with topology constraints for variable fields of view.
NeuroImage Aug, 2013 | Pubmed ID: 23927903
THALAMIC PARCELLATION FROM MULTI-MODAL DATA USING RANDOM FOREST LEARNING.
Proceedings. IEEE International Symposium on Biomedical Imaging , 2013 | Pubmed ID: 24145869
AUTOMATED ANATOMICAL LABELING OF THE CEREBRAL ARTERIES USING BELIEF PROPAGATION.
Proceedings of SPIE--the International Society for Optical Engineering Mar, 2013 | Pubmed ID: 24236229
COVARIANCE SHRINKING IN ACTIVE SHAPE MODELS WITH APPLICATION TO GYRAL LABELING OF THE CEREBRAL CORTEX.
Proceedings. IEEE International Symposium on Biomedical Imaging , 2013 | Pubmed ID: 24301715
Longitudinal Intensity Normalization of Magnetic Resonance Images using Patches.
Proceedings of SPIE--the International Society for Optical Engineering Mar, 2013 | Pubmed ID: 24382991
Pulse Sequence based Multi-acquisition MR Intensity Normalization.
Proceedings of SPIE--the International Society for Optical Engineering Mar, 2013 | Pubmed ID: 24386545
COMPRESSED SENSING BASED INTENSITY NON-UNIFORMITY CORRECTION.
Proceedings. IEEE International Symposium on Biomedical Imaging Dec, 2011 | Pubmed ID: 24443667
PATCH BASED INTENSITY NORMALIZATION OF BRAIN MR IMAGES.
Proceedings. IEEE International Symposium on Biomedical Imaging Dec, 2013 | Pubmed ID: 24443685
MAGNETIC RESONANCE IMAGE SYNTHESIS THROUGH PATCH REGRESSION.
Proceedings. IEEE International Symposium on Biomedical Imaging Dec, 2013 | Pubmed ID: 24443686
DEFORMABLE REGISTRATION OF MACULAR OCT USING A-MODE SCAN SIMILARITY.
Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging Dec, 2013 | Pubmed ID: 24443687
Multiple-object geometric deformable model for segmentation of macular OCT.
Biomedical optics express Apr, 2014 | Pubmed ID: 24761289
LONGITUDINAL INTENSITY NORMALIZATION IN THE PRESENCE OF MULTIPLE SCLEROSIS LESIONS.
Proceedings. IEEE International Symposium on Biomedical Imaging , 2013 | Pubmed ID: 24816891
MR to CT Registration of Brains using Image Synthesis.
Proceedings of SPIE--the International Society for Optical Engineering Mar, 2014 | Pubmed ID: 25057341
Analysis of macular OCT images using deformable registration.
Biomedical optics express Jul, 2014 | Pubmed ID: 25071959
Intensity Inhomogeneity Correction of Magnetic Resonance Images using Patches.
Proceedings of SPIE--the International Society for Optical Engineering Mar, 2011 | Pubmed ID: 25077011
Semi-automatic segmentation for 3D motion analysis of the tongue with dynamic MRI.
Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society Dec, 2014 | Pubmed ID: 25155697
Automatic method for thalamus parcellation using multi-modal feature classification.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2014 | Pubmed ID: 25320796
IMPROVING MAGNETIC RESONANCE RESOLUTION WITH SUPERVISED LEARNING.
Proceedings. IEEE International Symposium on Biomedical Imaging , 2014 | Pubmed ID: 25405001
RANDOM FOREST FLAIR RECONSTRUCTION FROM , , AND -WEIGHTED MRI.
Proceedings. IEEE International Symposium on Biomedical Imaging May, 2014 | Pubmed ID: 25405002
Automatic segmentation of microcystic macular edema in OCT.
Biomedical optics express Jan, 2015 | Pubmed ID: 25657884
Longitudinal graph-based segmentation of macular OCT using fundus alignment.
Proceedings of SPIE--the International Society for Optical Engineering , 2015 | Pubmed ID: 26023248
Segmentation of microcystic macular edema in Cirrus OCT scans with an exploratory longitudinal study.
Proceedings of SPIE--the International Society for Optical Engineering , 2015 | Pubmed ID: 26023249
MR image synthesis by contrast learning on neighborhood ensembles.
Medical image analysis Aug, 2015 | Pubmed ID: 26072167
Tree-Encoded Conditional Random Fields for Image Synthesis.
Information processing in medical imaging : proceedings of the ... conference , 2015 | Pubmed ID: 26221716
Using image synthesis for multi-channel registration of different image modalities.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2015 | Pubmed ID: 26246653
Subject-Specific Sparse Dictionary Learning for Atlas-Based Brain MRI Segmentation.
IEEE journal of biomedical and health informatics Sep, 2015 | Pubmed ID: 26340685
Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease.
NeuroImage Feb, 2016 | Pubmed ID: 26408861
Realistic analytical polyhedral MRI phantoms.
Magnetic resonance in medicine 08, 2016 | Pubmed ID: 26479724
Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling.
Proceedings of SPIE--the International Society for Optical Engineering Mar, 2016 | Pubmed ID: 27199501
Simultaneous Segmentation of Retinal Surfaces and Microcystic Macular Edema in SDOCT Volumes.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2016 | Pubmed ID: 27199502
Combined registration and motion correction of longitudinal retinal OCT data.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2016 | Pubmed ID: 27231406
Longitudinal Patch-Based Segmentation of Multiple Sclerosis White Matter Lesions.
Machine learning in medical imaging. MLMI (Workshop) Oct, 2015 | Pubmed ID: 27570846
Random forest regression for magnetic resonance image synthesis.
Medical image analysis 01, 2017 | Pubmed ID: 27607469
Multi-Output Decision Trees for Lesion Segmentation in Multiple Sclerosis.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2015 | Pubmed ID: 27695155
INTENSITY INHOMOGENEITY CORRECTION OF MACULAR OCT USING N3 AND RETINAL FLATSPACE.
Proceedings. IEEE International Symposium on Biomedical Imaging Apr, 2016 | Pubmed ID: 27695603
An adaptive grid for graph-based segmentation in retinal OCT.
Proceedings of SPIE--the International Society for Optical Engineering , 2014 | Pubmed ID: 27773959
Effects of Spatial Resolution on Image Registration.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2016 | Pubmed ID: 27773960
Cross contrast multi-channel image registration using image synthesis for MR brain images.
Medical image analysis 02, 2017 | Pubmed ID: 27816859
Longitudinal multiple sclerosis lesion segmentation: Resource and challenge.
NeuroImage Jan, 2017 | Pubmed ID: 28087490
A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2016 | Pubmed ID: 28479655
Longitudinal multiple sclerosis lesion segmentation data resource.
Data in brief Jun, 2017 | Pubmed ID: 28491937
Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort.
NeuroImage 09, 2017 | Pubmed ID: 28669906
Improving graph-based OCT segmentation for severe pathology in Retinitis Pigmentosa patients.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2017 | Pubmed ID: 28781413
Automated segmentation of mouse OCT volumes (ASiMOV): Validation & clinical study of a light damage model.
PloS one , 2017 | Pubmed ID: 28817571
Collaborative SDOCT Segmentation and Analysis Software.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2017 | Pubmed ID: 28919660
Efficient Multi-Atlas Registration using an Intermediate Template Image.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2017 | Pubmed ID: 28943702
Intensity inhomogeneity correction of SD-OCT data using macular flatspace.
Medical image analysis Jan, 2018 | Pubmed ID: 29040910
Whole Brain Parcellation with Pathology: Validation on Ventriculomegaly Patients.
Patch-based techniques in medical imaging : third International Workshop, Patch-MI 2017, held in conjunction with MICCAI 2017, Quebec City, QC, Canada, September 14, 2017, Proceedings. Patch-MI (Workshop) (3rd : 2017 : Quebec, Quebec) Sep, 2017 | Pubmed ID: 29459902
Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation.
Brainlesion : glioma, multiple sclerosis, stroke and traumatic brain injuries. BrainLes (Workshop) , 2018 | Pubmed ID: 29714358
State-of-the-Art Digital Imaging in Dentistry: Advanced Research of MRI, CT, CBCT, and Digital Intraoral Imaging.
BioMed research international , 2018 | Pubmed ID: 29854807
Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images.
NeuroImage 12, 2018 | Pubmed ID: 30099076
A supervoxel based random forest synthesis framework for bidirectional MR/CT synthesis.
Simulation and synthesis in medical imaging : ... International Workshop, SASHIMI ..., held in conjunction with MICCAI ..., proceedings. SASHIMI (Workshop) 09, 2017 | Pubmed ID: 30221260
Retinal layer parcellation of optical coherence tomography images: Data resource for multiple sclerosis and healthy controls.
Data in brief Feb, 2019 | Pubmed ID: 30671506
Layer boundary evolution method for macular OCT layer segmentation.
Biomedical optics express Mar, 2019 | Pubmed ID: 30891330
Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures.
Multiple sclerosis (Houndmills, Basingstoke, England) 06, 2020 | Pubmed ID: 31094280
Brain ventricle parcellation using a deep neural network: Application to patients with ventriculomegaly.
NeuroImage. Clinical , 2019 | Pubmed ID: 31174103
DeepHarmony: A deep learning approach to contrast harmonization across scanner changes.
Magnetic resonance imaging 12, 2019 | Pubmed ID: 31301354
Towards Topological Correct Segmentation of Macular OCT from Cascaded FCNs.
Fetal, Infant and Ophthalmic Medical Image Analysis : International Workshop, FIFI 2017 and 4th International Workshop, OMIA 2017, Held in Conjunction with MICCAI 2017, Quebec City, QC, Canada, September 14, 2017. FIFI (Workshop) (2017 ... Sep, 2017 | Pubmed ID: 31355372
Deep learning based topology guaranteed surface and MME segmentation of multiple sclerosis subjects from retinal OCT.
Biomedical optics express Oct, 2019 | Pubmed ID: 31646029
Multi-layer Fast Level Set Segmentation for Macular OCT.
Proceedings. IEEE International Symposium on Biomedical Imaging Apr, 2018 | Pubmed ID: 31853331
Fully Convolutional Boundary Regression for Retina OCT Segmentation.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention Oct, 2019 | Pubmed ID: 31853524
Association of body mass index with longitudinal rates of retinal atrophy in multiple sclerosis.
Multiple sclerosis (Houndmills, Basingstoke, England) 06, 2020 | Pubmed ID: 32297826
Cerebellum Parcellation with Convolutional Neural Networks.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2019 | Pubmed ID: 32394999
Hierarchical Parcellation of the Cerebellum.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention Oct, 2019 | Pubmed ID: 32399521
Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis.
Scientific reports 05, 2020 | Pubmed ID: 32427874
Automatic cerebellum anatomical parcellation using U-Net with locally constrained optimization.
NeuroImage 09, 2020 | Pubmed ID: 32438049
Longitudinal analysis of regional cerebellum volumes during normal aging.
NeuroImage 10, 2020 | Pubmed ID: 32592850
Shortcomings of Ventricle Segmentation Using Deep Convolutional Networks.
Understanding and interpreting machine learning in medical image computing applications : first International Workshops, MLCN 2018, DLF 2018, and iMIMIC 2018, held in conjunction with MICCAI 2018, Granada, Spain, September 16-20, 2018 :... Sep, 2018 | Pubmed ID: 33094293
Structured layer surface segmentation for retina OCT using fully convolutional regression networks.
Medical image analysis 02, 2021 | Pubmed ID: 33260113
Autoencoder based self-supervised test-time adaptation for medical image analysis.
Medical image analysis 08, 2021 | Pubmed ID: 34246070
Multi-atlas segmentation of the hydrocephalus brain using an adaptive ventricle atlas.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2018 | Pubmed ID: 34376903
Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory.
NeuroImage 11, 2021 | Pubmed ID: 34506916
Accurate Estimation of Total Intracranial Volume in MRI using a Multi-tasked Image-to-Image Translation Network.
Proceedings of SPIE--the International Society for Optical Engineering Feb, 2021 | Pubmed ID: 34548736
A Standardized Pipeline for Examining Human Cerebellar Grey Matter Morphometry using Structural Magnetic Resonance Imaging
Rebecca Kerestes1,
Shuo Han2,
Srinivas Balachander3,
Carlos Hernandez-Castillo4,
Jerry L. Prince5,6,
Jörn Diedrichsen7,
Ian H. Harding1,8
1Department of Neuroscience, Central Clinical School, Monash University,
2Department of Biomedical Engineering, The Johns Hopkins University,
3Department of Psychiatry, National Institute of Mental Health & Neuro Sciences (NIMHANS),
4Faculty of Computer Science, Dalhousie University,
5Department of Electrical and Computer Engineering, The Johns Hopkins University,
6Department of Computer Science, The Johns Hopkins University,
7Brain and Mind Institute, Department for Statistical and Actuarial Sciences, Department for Computer Science, Western University,
8Monash Biomedical Imaging, Monash University
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