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INRAE,
AgroParisTech,
Micalis Institute,
INRAe, AgroParisTech, Micalis Institute
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Expanding Biosensing Abilities through Computer-Aided Design of Metabolic Pathways.
ACS synthetic biology 10, 2016 | Pubmed ID: 27028723
SensiPath: computer-aided design of sensing-enabling metabolic pathways.
Nucleic acids research 07, 2016 | Pubmed ID: 27106061
Sensing new chemicals with bacterial transcription factors.
Current opinion in microbiology 10, 2016 | Pubmed ID: 27472026
Extended Metabolic Space Modeling.
Methods in molecular biology (Clifton, N.J.) , 2018 | Pubmed ID: 29170954
RetroPath2.0: A retrosynthesis workflow for metabolic engineers.
Metabolic engineering 01, 2018 | Pubmed ID: 29233745
Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0.
Journal of cheminformatics Dec, 2017 | Pubmed ID: 29260340
A dataset of small molecules triggering transcriptional and translational cellular responses.
Data in brief Apr, 2018 | Pubmed ID: 29556520
Enzyme Discovery: Enzyme Selection and Pathway Design.
Methods in enzymology , 2018 | Pubmed ID: 30173766
RetroRules: a database of reaction rules for engineering biology.
Nucleic acids research 01, 2019 | Pubmed ID: 30321422
Custom-made transcriptional biosensors for metabolic engineering.
Current opinion in biotechnology 10, 2019 | Pubmed ID: 30921678
Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors.
Nature communications 04, 2019 | Pubmed ID: 30979906
Microbial Genes for a Circular and Sustainable Bio-PET Economy.
Genes 05, 2019 | Pubmed ID: 31100963
Optimizing Cell-Free Biosensors to Monitor Enzymatic Production.
ACS synthetic biology 08, 2019 | Pubmed ID: 31335131
Metabolic perceptrons for neural computing in biological systems.
Nature communications 08, 2019 | Pubmed ID: 31462649
Reinforcement Learning for Bioretrosynthesis.
ACS synthetic biology 01, 2020 | Pubmed ID: 31841626
Development of a Biosensor for Detection of Benzoic Acid Derivatives in .
Frontiers in bioengineering and biotechnology , 2019 | Pubmed ID: 31970152
Large scale active-learning-guided exploration for in vitro protein production optimization.
Nature communications 04, 2020 | Pubmed ID: 32312991
In silico, in vitro, and in vivo machine learning in synthetic biology and metabolic engineering.
Current opinion in chemical biology 12, 2021 | Pubmed ID: 34280705
Cell-Free Biosensors and AI Integration.
Methods in molecular biology (Clifton, N.J.) , 2022 | Pubmed ID: 34985753
Differentially Optimized Cell-Free Buffer Enables Robust Expression from Unprotected Linear DNA in Exonuclease-Deficient Extracts.
ACS synthetic biology 02, 2022 | Pubmed ID: 35034449
Correction to: Cell-Free Biosensors and AI Integration.
Methods in molecular biology (Clifton, N.J.) , 2022 | Pubmed ID: 35230678
PeroxiHUB: A Modular Cell-Free Biosensing Platform Using HO as Signal Integrator.
ACS synthetic biology Aug, 2022 | Pubmed ID: 35913043
Université Paris-Saclay
Mahnaz Sabeti Azad*,1,
Angelo Cardoso Batista*,1,
Jean-Loup Faulon1,
Chase L. Beisel2,3,
Jerome Bonnet4,
Manish Kushwaha1
1INRAe, AgroParisTech, Micalis Institute, Université Paris-Saclay,
2Helmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz-Centre for Infection Research (HZI),
3Medical Faculty, University of Würzburg,
4Centre de Biochimie Structurale, INSERM U1054, CNRS UMR 5048, University of Montpellier
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