Laboratory of Mass Spectrometry and Gaseous Ion Chemistry
David Fenyo has not added Biography.
If you are David Fenyo and would like to personalize this page please email our Author Liaison for assistance.
RADARS, a bioinformatics solution that automates proteome mass spectral analysis, optimises protein identification, and archives data in a relational database.
Proteomics Jan, 2002 | Pubmed ID: 11788990
A model of random mass-matching and its use for automated significance testing in mass spectrometric proteome analysis.
Proteomics Mar, 2002 | Pubmed ID: 11921442
Informatics and data management in proteomics.
Trends in biotechnology Dec, 2002 | Pubmed ID: 12570158
A modular cross-linking approach for exploring protein interactions.
Journal of the American Chemical Society Mar, 2003 | Pubmed ID: 12603129
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes.
Analytical chemistry Feb, 2003 | Pubmed ID: 12622365
Probity: a protein identification algorithm with accurate assignment of the statistical significance of the results.
Journal of proteome research Jan-Feb, 2004 | Pubmed ID: 14998160
The statistical significance of protein identification results as a function of the number of protein sequences searched.
Journal of proteome research Sep-Oct, 2004 | Pubmed ID: 15473685
A proteomics approach to the study of absorption, distribution, metabolism, excretion, and toxicity.
Journal of biomolecular techniques : JBT Dec, 2004 | Pubmed ID: 15585823
Phosphotyrosine signaling networks in epidermal growth factor receptor overexpressing squamous carcinoma cells.
Molecular & cellular proteomics : MCP Apr, 2005 | Pubmed ID: 15657067
Protein identification in complex mixtures.
Journal of proteome research Mar-Apr, 2005 | Pubmed ID: 15822914
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis.
Proteomics Aug, 2005 | Pubmed ID: 16047398
Optimizing search conditions for the mass fingerprint-based identification of proteins.
Proteomics Apr, 2006 | Pubmed ID: 16485258
SwePep, a database designed for endogenous peptides and mass spectrometry.
Molecular & cellular proteomics : MCP Jun, 2006 | Pubmed ID: 16501280
Reproducibility of LC-MS-based protein identification.
Journal of experimental botany , 2006 | Pubmed ID: 16551682
Detection of artifacts and peptide modifications in liquid chromatography/mass spectrometry data using two-dimensional signal intensity map data visualization.
Rapid communications in mass spectrometry : RCM , 2006 | Pubmed ID: 16628601
Determining the overall merit of protein identification data sets: rho-diagrams and rho-scores.
Journal of proteome research May, 2007 | Pubmed ID: 17397212
Neuropeptidomics strategies for specific and sensitive identification of endogenous peptides.
Molecular & cellular proteomics : MCP Jul, 2007 | Pubmed ID: 17401030
Improving the success rate of proteome analysis by modeling protein-abundance distributions and experimental designs.
Nature biotechnology Jun, 2007 | Pubmed ID: 17557102
An automated method for scanning LC-MS data sets for significant peptides and proteins, including quantitative profiling and interactive confirmation.
Journal of proteome research Jul, 2007 | Pubmed ID: 17559249
Informatics development: challenges and solutions for MALDI mass spectrometry.
Mass spectrometry reviews Jan-Feb, 2008 | Pubmed ID: 17979143
Use of DNA ladders for reproducible protein fractionation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) for quantitative proteomics.
Journal of proteome research Feb, 2008 | Pubmed ID: 18189343
Rapid isolation and identification of bacteriophage T4-encoded modifications of Escherichia coli RNA polymerase: a generic method to study bacteriophage/host interactions.
Journal of proteome research Mar, 2008 | Pubmed ID: 18271525
Efficient identification of phosphorylation by mass spectrometric phosphopeptide fingerprinting.
Analytical chemistry Apr, 2008 | Pubmed ID: 18321079
Finding protein sequences using PROWL.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] Oct, 2004 | Pubmed ID: 18428719
Validation of endogenous peptide identifications using a database of tandem mass spectra.
Journal of proteome research Jul, 2008 | Pubmed ID: 18549260
Screening for EphB signaling effectors using SILAC with a linear ion trap-orbitrap mass spectrometer.
Journal of proteome research Nov, 2008 | Pubmed ID: 18816084
Evaluation of the variation in sample preparation for comparative proteomics using stable isotope labeling by amino acids in cell culture.
Journal of proteome research Mar, 2009 | Pubmed ID: 19140678
Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei.
Genes & development May, 2009 | Pubmed ID: 19369410
Rapid sensitive analysis of cysteine rich peptide venom components.
Proceedings of the National Academy of Sciences of the United States of America Apr, 2009 | Pubmed ID: 19380747
Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.
Molecular & cellular proteomics : MCP Feb, 2010 | Pubmed ID: 19858499
GINS motion reveals replication fork progression is remarkably uniform throughout the yeast genome.
Molecular systems biology , 2010 | Pubmed ID: 20212525
The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate-washed membrane standard.
Proteomics Nov, 2010 | Pubmed ID: 20486120
Mass spectrometric protein identification using the global proteome machine.
Methods in molecular biology (Clifton, N.J.) , 2010 | Pubmed ID: 20835799
Protein quantitation using mass spectrometry.
Methods in molecular biology (Clifton, N.J.) , 2010 | Pubmed ID: 20835801
Modeling experimental design for proteomics.
Methods in molecular biology (Clifton, N.J.) , 2010 | Pubmed ID: 20835802
Modeling mass spectrometry-based protein analysis.
Methods in molecular biology (Clifton, N.J.) , 2011 | Pubmed ID: 21082431
High-Capacity Ion Trap Coupled to a Time-of-Flight Mass Spectrometer for Comprehensive Linked Scans with no Scanning Losses.
International journal of mass spectrometry Mar, 2011 | Pubmed ID: 21516228
Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding.
Science (New York, N.Y.) Sep, 2011 | Pubmed ID: 21764753
Strategy for identifying dendritic cell-processed CD4+ T cell epitopes from the HIV gag p24 protein.
PloS one , 2012 | Pubmed ID: 22860026
Comparative proteomic analysis of the ATP-sensitive K+ channel complex in different tissue types.
Proteomics Jan, 2013 | Pubmed ID: 23197389
Chromosome 19 annotations with disease speciation: a first report from the Global Research Consortium.
Journal of proteome research Jan, 2013 | Pubmed ID: 23249167
A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17.
Journal of proteome research Jan, 2013 | Pubmed ID: 23259914
Atypical and classical memory B cells produce Plasmodium falciparum neutralizing antibodies.
The Journal of experimental medicine Feb, 2013 | Pubmed ID: 23319701
Developments in biobanking workflow standardization providing sample integrity and stability.
Journal of proteomics Dec, 2013 | Pubmed ID: 23856607
Super-resolution fluorescence microscopy of the cardiac connexome reveals plakophilin-2 inside the connexin43 plaque.
Cardiovascular research Nov, 2013 | Pubmed ID: 23929525
Integrated chromosome 19 transcriptomic and proteomic data sets derived from glioma cancer stem-cell lines.
Journal of proteome research Jan, 2014 | Pubmed ID: 24266786
Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels.
Molecular & cellular proteomics : MCP Jul, 2014 | Pubmed ID: 24719451
Super-resolution imaging reveals that loss of the C-terminus of connexin43 limits microtubule plus-end capture and NaV1.5 localization at the intercalated disc.
Cardiovascular research Nov, 2014 | Pubmed ID: 25139742
A robust pipeline for rapid production of versatile nanobody repertoires.
Nature methods Dec, 2014 | Pubmed ID: 25362362
Use of ENCODE resources to characterize novel proteoforms and missing proteins in the human proteome.
Journal of proteome research Feb, 2015 | Pubmed ID: 25369122
Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells--a benchmarking study.
BMC genomics , 2014 | Pubmed ID: 25521637
The GPMDB REST interface.
Bioinformatics (Oxford, England) Feb, 2015 | Pubmed ID: 25697819
SOBRE A JoVE
Copyright © 2024 MyJoVE Corporation. Todos os direitos reservados