Michael McClelland

DNA microarray-based typing of an atypical monophasic Salmonella enterica serovar.

Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis.

Bile acids mimic oxidative stress induced upregulation of thioredoxin reductase in colon cancer cell lines.

Microarray analysis identifies Salmonella genes belonging to the low-shear modeled microgravity regulon.

Low-Shear modeled microgravity alters the Salmonella enterica serovar typhimurium stress response in an RpoS-independent manner.

A non-redundant microarray of genes for two related bacteria.

Global regulation by CsrA in Salmonella typhimurium.

EnteriX 2003: Visualization tools for genome alignments of Enterobacteriaceae.

Lateral gene transfer in Salmonella.

Microarray analysis using RNA arbitrarily primed PCR.

Regulation of Salmonella typhimurium virulence gene expression by cationic antimicrobial peptides.

Detection of a Salmonella enterica serovar California strain spreading in spanish feed mills and genetic characterization with DNA microarrays.

Egr1 signaling in prostate cancer.

In silico dissection of cell-type-associated patterns of gene expression in prostate cancer.

DNA amplification and rearrangements in archival Salmonella enterica serovar Typhimurium LT2 cultures.

Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genes.

Host restriction of Salmonella enterica serotype Typhimurium pigeon isolates does not correlate with loss of discrete genes.

Flagellin fusion proteins as adjuvants or vaccines induce specific immune responses.

Salmonella enterica serovar Typhi strains from which SPI7, a 134-kilobase island with genes for Vi exopolysaccharide and other functions, has been deleted.

Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid.

Erwinia toletana sp. nov., associated with Pseudomonas savastanoi-induced tree knots.

Identification of promoters bound by c-Jun/ATF2 during rapid large-scale gene activation following genotoxic stress.

Pigeon-associated strains of Salmonella enterica serovar Typhimurium phage type DT2 have genomic rearrangements at rRNA operons.

Host gene expression changes and DNA amplification during temperate phage induction.

Mechanisms of sulindac-induced apoptosis and cell cycle arrest.

Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ.

Alternative sigma factor interactions in Salmonella: sigma and sigma promote antioxidant defences by enhancing sigma levels.

Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium.

Enhanced microarray performance using low complexity representations of the transcriptome.

Correlation of phenotype with the genotype of egg-contaminating Salmonella enterica serovar Enteritidis.

Survey of differentially methylated promoters in prostate cancer cell lines.

Vertical arrays: microarrays of complex mixtures of nucleic acids.

WebArray: an online platform for microarray data analysis.

"Promoter array" studies identify cohorts of genes directly regulated by methylation, copy number change, or transcription factor binding in human cancer cells.

DNA microarray detection of antimicrobial resistance genes in diverse bacteria.

Transcriptome of Salmonella enterica serovar Typhi within macrophages revealed through the selective capture of transcribed sequences.

Messenger RNAs under differential translational control in Ki-ras-transformed cells.

Identification of new flagellar genes of Salmonella enterica serovar Typhimurium.

Salmonella enterica serovar Typhimurium requires the Lpf, Pef, and Tafi fimbriae for biofilm formation on HEp-2 tissue culture cells and chicken intestinal epithelium.

Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella.

Identification of specific gene sequences conserved in contemporary epidemic strains of Salmonella enterica.

Uncovering a large set of genes that affect surface motility in Salmonella enterica serovar Typhimurium.

PhoP-induced genes within Salmonella pathogenicity island 1.

[Salmonella transcriptome during macrophage infection].

FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s).

Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis.

Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA.

Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: transposon exclusion by high-density DNA binding proteins.

The RcsCDB signaling system and swarming motility in Salmonella enterica serovar typhimurium: dual regulation of flagellar and SPI-2 virulence genes.

Toxicogenomic analysis incorporating operon-transcriptional coupling and toxicant concentration-expression response: analysis of MX-treated Salmonella.

Chromatin modifications induced by PML-RARalpha repress critical targets in leukemogenesis as analyzed by ChIP-Chip.

Evaluation of nested PCR in detection of Helicobacter pylori targeting a highly conserved gene: HSP60.

Nitric oxide antagonizes the acid tolerance response that protects Salmonella against innate gastric defenses.

Determination of the gene content of Salmonella genomes by microarray analysis.

Assessment of gene expression in many samples using vertical arrays.

Salmonella serovar identification using PCR-based detection of gene presence and absence.

Microarray for molecular typing of Salmonella enterica serovars.

Salmonella promoters preferentially activated inside tumors.

The wisdom of the commons: ensemble tree classifiers for prostate cancer prognosis.

The CorA Mg2+ channel is required for the virulence of Salmonella enterica serovar typhimurium.

Egr1 regulates the coordinated expression of numerous EGF receptor target genes as identified by ChIP-on-chip.

Media ion composition controls regulatory and virulence response of Salmonella in spaceflight.

Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium.

Genome-wide analysis of the PreA/PreB (QseB/QseC) regulon of Salmonella enterica serovar Typhimurium.

Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation.

Novel genetic tools for studying food-borne Salmonella.

Analysis of pools of targeted Salmonella deletion mutants identifies novel genes affecting fitness during competitive infection in mice.

WebArrayDB: cross-platform microarray data analysis and public data repository.

Development of a DNA microarray to detect antimicrobial resistance genes identified in the National Center for Biotechnology Information database.

Fitness costs and stability of a high-level ciprofloxacin resistance phenotype in Salmonella enterica serotype enteritidis: reduced infectivity associated with decreased expression of Salmonella pathogenicity island 1 genes.

Analyzing microarray data using WebArray.

Spontaneous excision of the Salmonella enterica serovar Enteritidis-specific defective prophage-like element phiSE14.

Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species.

High-throughput screening for salmonella avirulent mutants that retain targeting of solid tumors.

Evaluating oligonucleotide properties for DNA microarray probe design.

Profiling of histone H3 lysine 9 trimethylation levels predicts transcription factor activity and survival in acute myeloid leukemia.

Distinct DNA methylation profiles between adenocarcinoma and squamous cell carcinoma of human uterine cervix.

TabSQL: a MySQL tool to facilitate mapping user data to public databases.

The AI-2-dependent regulator LsrR has a limited regulon in Salmonella Typhimurium.

In silico estimates of tissue components in surgical samples based on expression profiling data.

Humanized nonobese diabetic-scid IL2rgammanull mice are susceptible to lethal Salmonella Typhi infection.

Specific responses of Salmonella enterica to tomato varieties and fruit ripeness identified by in vivo expression technology.

Stem cell-like micro-RNA signature driven by Myc in aggressive liver cancer.

The CpxR/CpxA two-component system up-regulates two Tat-dependent peptidoglycan amidases to confer bacterial resistance to antimicrobial peptide.

Analysis of Salmonella enterica serotype paratyphi A gene expression in the blood of bacteremic patients in Bangladesh.

Increased HDAC1 deposition at hematopoietic promoters in AML and its association with patient survival.

Abrogation of the twin arginine transport system in Salmonella enterica serovar Typhimurium leads to colonization defects during infection.

Analysis of the ArcA regulon in anaerobically grown Salmonella enterica sv. Typhimurium.

Diagnosis of prostate cancer using differentially expressed genes in stroma.

Olympus PlasmaButton transurethral vaporization technique for benign prostatic hyperplasia.

Salmonella exploits Arl8B-directed kinesin activity to promote endosome tubulation and cell-to-cell transfer.

Hydrogen-stimulated carbon acquisition and conservation in Salmonella enterica serovar Typhimurium.

Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium.

The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets.

The accuracy of survival time prediction for patients with glioma is improved by measuring mitotic spindle checkpoint gene expression.

Infection of mice by Salmonella enterica serovar Enteritidis involves additional genes that are absent in the genome of serovar Typhimurium.

In vivo expression of Salmonella enterica serotype Typhi genes in the blood of patients with typhoid fever in Bangladesh.

Molecular and cellular characterization of a Salmonella enterica serovar Paratyphi a outbreak strain and the human immune response to infection.

Genome-wide analysis of histone H3 acetylation patterns in AML identifies PRDX2 as an epigenetically silenced tumor suppressor gene.

Gene expression analysis of Salmonella enterica Enteritidis Nal(R) and Salmonella enterica Kentucky 3795 exposed to HCl and acetic acid in rich medium.

Requirement of siderophore biosynthesis for plant colonization by Salmonella enterica.

Hypochlorous acid and hydrogen peroxide-induced negative regulation of Salmonella enterica serovar Typhimurium ompW by the response regulator ArcA.

Virulence of 32 Salmonella strains in mice.

Selection of Salmonella enterica serovar Typhi genes involved during interaction with human macrophages by screening of a transposon mutant library.

High-throughput comparison of gene fitness among related bacteria.

The NsrR regulon in nitrosative stress resistance of Salmonella enterica serovar Typhimurium.

Expression changes in the stroma of prostate cancer predict subsequent relapse.

A sample selection strategy to boost the statistical power of signature detection in cancer expression profile studies.

Global transcriptional analysis of dehydrated Salmonella enterica serovar Typhimurium.

An accurate prostate cancer prognosticator using a seven-gene signature plus Gleason score and taking cell type heterogeneity into account.

Live attenuated S. Typhimurium vaccine with improved safety in immuno-compromised mice.

Comparative analysis of genome sequences covering the seven cronobacter species.

L-asparaginase II produced by Salmonella typhimurium inhibits T cell responses and mediates virulence.

The intestinal fatty acid propionate inhibits Salmonella invasion through the post-translational control of HilD.

Characterization of an acid-inducible sulfatase in Salmonella enterica serovar Typhimurium.

Consequences of disrupting Salmonella AI-2 signaling on interactions within soft rots.

Evolutionary Genomics of Salmonella enterica Subspecies.

Virulence gene profiling and pathogenicity characterization of non-typhoidal Salmonella accounted for invasive disease in humans.

A single step multiplex PCR for identification of six diarrheagenic E. coli pathotypes and Salmonella.

Natural products and transforming growth factor-beta (TGF-β) signaling in cancer development and progression.

Mapping and regulation of genes within Salmonella pathogenicity island 12 that contribute to in vivo fitness of Salmonella enterica Serovar Typhimurium.

The EAL domain containing protein STM2215 (rtn) is needed during Salmonella infection and has cyclic di-GMP phosphodiesterase activity.

Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ⁵⁴ (RpoN) regulon of Salmonella Typhimurium LT2.

Expression of HER2 in Breast Cancer Promotes a Massive Reorganization of Gene Activity and Suggests a Role for Epigenetic Regulation.

Novel determinants of intestinal colonization of Salmonella enterica serotype typhimurium identified in bovine enteric infection.

Probing the ArcA regulon under aerobic/ROS conditions in Salmonella enterica serovar Typhimurium.

The 4-cysteine zinc-finger motif of the RNA polymerase regulator DksA serves as a thiol switch for sensing oxidative and nitrosative stress.

Whole-Genome Sequencing of Salmonella enterica subsp. enterica Serovar Cubana Strains Isolated from Agricultural Sources.

Generation of "virtual" control groups for single arm prostate cancer adjuvant trials.

Integrative analysis of Salmonellosis in Israel reveals association of Salmonella enterica Serovar 9,12:l,v:- with extraintestinal infections, dissemination of endemic S. enterica Serovar Typhimurium DT104 biotypes, and severe underreporting of outbreaks.

Identification of a Salmonella ancillary copper detoxification mechanism by a comparative analysis of the genome-wide transcriptional response to copper and zinc excess.

The small RNA RyhB homologs from Salmonella typhimurium participate in the response to S-nitrosoglutathione-induced stress.

Defined Single-Gene and Multi-Gene Deletion Mutant Collections in Salmonella enterica sv Typhimurium.

Role of the adjacent stroma cells in prostate cancer development and progression: synergy between TGF-β and IGF signaling.