Thomas Junier

New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features.

Biased distributions and decay of long interspersed nuclear elements in the chicken genome.

Comparative in silico analysis of PCR primers suited for diagnostics and cloning of ammonia monooxygenase genes from ammonia-oxidizing bacteria.

Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species.

The cis-acting replication elements define human enterovirus and rhinovirus species.

TRiFLe, a program for in silico terminal restriction fragment length polymorphism analysis with user-defined sequence sets.

Community analysis of betaproteobacterial ammonia-oxidizing bacteria using the amoCAB operon.

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses.

The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection.

Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment.

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell.

The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.

Rhinovirus genome evolution during experimental human infection.

Rhinovirus genome variation during chronic upper and lower respiratory tract infections.

Purifying selection in mammalian mitochondrial protein-coding genes is highly effective and congruent with evolution of nuclear genes.

Impact of highly active antiretroviral therapy on the molecular epidemiology of newly diagnosed HIV infections.

Contribution of genetic background, traditional risk factors, and HIV-related factors to coronary artery disease events in HIV-positive persons.

Quantification of endospore-forming firmicutes by quantitative PCR with the functional gene spo0A.

Stage 0 sporulation gene A as a molecular marker to study diversity of endospore-forming Firmicutes.

Endospore-enriched sequencing approach reveals unprecedented diversity of Firmicutes in sediments.

Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.).

Under-detection of endospore-forming Firmicutes in metagenomic data.

Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species.

MLgsc: A Maximum-Likelihood General Sequence Classifier.

Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir.

Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent.

CEGA-a catalog of conserved elements from genomic alignments.

Diversity and ecology of oxalotrophic bacteria.