Rama Ranganathan
Green Center for Systems Biology
University of Texas Southwestern Medical Center
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Knowledge-based potential functions in protein design.
Current opinion in structural biology Aug, 2002 | Pubmed ID: 12163066
Overview of the Alliance for Cellular Signaling.
Nature Dec, 2002 | Pubmed ID: 12478301
Evolutionarily conserved networks of residues mediate allosteric communication in proteins.
Nature structural biology Jan, 2003 | Pubmed ID: 12483203
Cell biology. A matter of life or death.
Science (New York, N.Y.) Mar, 2003 | Pubmed ID: 12637727
Allosteric determinants in guanine nucleotide-binding proteins.
Proceedings of the National Academy of Sciences of the United States of America Nov, 2003 | Pubmed ID: 14623969
Local complexity of amino acid interactions in a protein core.
Proceedings of the National Academy of Sciences of the United States of America Jan, 2004 | Pubmed ID: 14684834
Structural determinants of allosteric ligand activation in RXR heterodimers.
Cell Feb, 2004 | Pubmed ID: 15016376
Evolutionary information for specifying a protein fold.
Nature Sep, 2005 | Pubmed ID: 16177782
Natural-like function in artificial WW domains.
Nature Sep, 2005 | Pubmed ID: 16177795
A global analysis of cross-talk in a mammalian cellular signalling network.
Nature cell biology Jun, 2006 | Pubmed ID: 16699502
Knowledge-based potentials in protein design.
Current opinion in structural biology Aug, 2006 | Pubmed ID: 16843652
Signal transduction pathway of TonB-dependent transporters.
Proceedings of the National Academy of Sciences of the United States of America Jan, 2007 | Pubmed ID: 17197416
Elevated basal slippage mutation rates among the Canidae.
The Journal of heredity , 2007 | Pubmed ID: 17437958
Role of GSTM1 (Null/Present), GSTP1 (Ile105Val) and P53 (Arg72Pro) genetic polymorphisms and the risk of breast cancer: a case control study from South India.
Asian Pacific journal of cancer prevention : APJCP Apr-Jun, 2007 | Pubmed ID: 17696741
Retrospective analysis of locally advanced noninflammatory breast cancer from Chennai, South India, 1990-1999.
International journal of radiation oncology, biology, physics Jan, 2008 | Pubmed ID: 17869447
Dynamic scaffolding in a G protein-coupled signaling system.
Cell Oct, 2007 | Pubmed ID: 17923089
Biochemistry. Signaling across the cell membrane.
Science (New York, N.Y.) Nov, 2007 | Pubmed ID: 18033872
TGFbeta1 (Leu10Pro), p53 (Arg72Pro) can predict for increased risk for breast cancer in south Indian women and TGFbeta1 Pro (Leu10Pro) allele predicts response to neo-adjuvant chemo-radiotherapy.
Breast cancer research and treatment Nov, 2008 | Pubmed ID: 18058229
Childhood cancers in Chennai, India, 1990-2001: incidence and survival.
International journal of cancer Jun, 2008 | Pubmed ID: 18324630
Systems analysis of the single photon response in invertebrate photoreceptors.
Proceedings of the National Academy of Sciences of the United States of America Jul, 2008 | Pubmed ID: 18653755
Lack of active follow-up of cancer patients in Chennai, India: implications for population-based survival estimates.
Bulletin of the World Health Organization Jul, 2008 | Pubmed ID: 18670662
Surface sites for engineering allosteric control in proteins.
Science (New York, N.Y.) Oct, 2008 | Pubmed ID: 18927392
CYP17 (T34C), CYP19 (Trp39Arg), and FGFR2 (C906T) polymorphisms and the risk of breast cancer in south Indian women.
Asian Pacific journal of cancer prevention : APJCP Jan-Mar, 2009 | Pubmed ID: 19469636
Protein sectors: evolutionary units of three-dimensional structure.
Cell Aug, 2009 | Pubmed ID: 19703402
Autophagy: Snapshot of the network.
Nature Jul, 2010 | Pubmed ID: 20596005
Cure models for estimating hospital-based breast cancer survival.
Asian Pacific journal of cancer prevention : APJCP , 2010 | Pubmed ID: 20843121
An interdomain sector mediating allostery in Hsp70 molecular chaperones.
Molecular systems biology Sep, 2010 | Pubmed ID: 20865007
Prognostic factors in patients with node-negative gastric cancer: an Indian experience.
World journal of surgical oncology , 2011 | Pubmed ID: 21554745
Hot spots for allosteric regulation on protein surfaces.
Cell Dec, 2011 | Pubmed ID: 22196731
XPD Lys751Gln increases the risk of breast cancer.
Oncology letters Jan, 2011 | Pubmed ID: 22870145
Quantifying the rhythm of KaiB-C interaction for in vitro cyanobacterial circadian clock.
PloS one , 2012 | Pubmed ID: 22900029
The spatial architecture of protein function and adaptation.
Nature Nov, 2012 | Pubmed ID: 23041932
Evolution-based design of proteins.
Methods in enzymology , 2013 | Pubmed ID: 23422432
Systems-level characterization of the kernel mechanism of the cyanobacterial circadian oscillator.
Bio Systems Mar, 2014 | Pubmed ID: 24444761
A novel allosteric mechanism in the cysteine peptidase cathepsin K discovered by computational methods.
Nature communications , 2014 | Pubmed ID: 24518821
Evolvability as a function of purifying selection in TEM-1 β-lactamase.
Cell Feb, 2015 | Pubmed ID: 25723163
Paediatric retinoblastoma in India: evidence from the National Cancer Registry Programme.
Asian Pacific journal of cancer prevention : APJCP , 2015 | Pubmed ID: 26028071
Evolution-Based Functional Decomposition of Proteins.
PLoS computational biology Jun, 2016 | Pubmed ID: 27254668
Origins of Allostery and Evolvability in Proteins: A Case Study.
Cell Jun, 2016 | Pubmed ID: 27321669
The Context-Dependence of Mutations: A Linkage of Formalisms.
PLoS computational biology Jun, 2016 | Pubmed ID: 27337695
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