Rama Ranganathan

Green Center for Systems Biology, University of Texas Southwestern Medical Center

Affiliated withUniversity of Texas Southwestern Medical Center

Research Area

Biology

Biography

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JoVE Journal Publications

Article Total : 1	Year
Publication title	2016

Other Publications

Article	Year
Knowledge-based potential functions in protein design. Current opinion in structural biology\| PubMed ID: 12163066	2002
Overview of the Alliance for Cellular Signaling. Nature\| PubMed ID: 12478301	2002
Evolutionarily conserved networks of residues mediate allosteric communication in proteins. Nature structural biology\| PubMed ID: 12483203	2003
Cell biology. A matter of life or death. Science (New York, N.Y.)\| PubMed ID: 12637727	2003
Allosteric determinants in guanine nucleotide-binding proteins. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 14623969	2003
Local complexity of amino acid interactions in a protein core. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 14684834	2004
Structural determinants of allosteric ligand activation in RXR heterodimers. Cell\| PubMed ID: 15016376	2004
Evolutionary information for specifying a protein fold. Nature\| PubMed ID: 16177782	2005
Natural-like function in artificial WW domains. Nature\| PubMed ID: 16177795	2005
A global analysis of cross-talk in a mammalian cellular signalling network. Nature cell biology\| PubMed ID: 16699502	2006
Knowledge-based potentials in protein design. Current opinion in structural biology\| PubMed ID: 16843652	2006
Signal transduction pathway of TonB-dependent transporters. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 17197416	2007
Elevated basal slippage mutation rates among the Canidae. The Journal of heredity\| PubMed ID: 17437958	2007
Role of GSTM1 (Null/Present), GSTP1 (Ile105Val) and P53 (Arg72Pro) genetic polymorphisms and the risk of breast cancer: a case control study from South India. Asian Pacific journal of cancer prevention : APJCP\| PubMed ID: 17696741	2007
Retrospective analysis of locally advanced noninflammatory breast cancer from Chennai, South India, 1990-1999. International journal of radiation oncology, biology, physics\| PubMed ID: 17869447	2008
Dynamic scaffolding in a G protein-coupled signaling system. Cell\| PubMed ID: 17923089	2007
Biochemistry. Signaling across the cell membrane. Science (New York, N.Y.)\| PubMed ID: 18033872	2007
TGFbeta1 (Leu10Pro), p53 (Arg72Pro) can predict for increased risk for breast cancer in south Indian women and TGFbeta1 Pro (Leu10Pro) allele predicts response to neo-adjuvant chemo-radiothe... Breast cancer research and treatment\| PubMed ID: 18058229	2008
Childhood cancers in Chennai, India, 1990-2001: incidence and survival. International journal of cancer\| PubMed ID: 18324630	2008
Systems analysis of the single photon response in invertebrate photoreceptors. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 18653755	2008
Lack of active follow-up of cancer patients in Chennai, India: implications for population-based survival estimates. Bulletin of the World Health Organization\| PubMed ID: 18670662	2008
Surface sites for engineering allosteric control in proteins. Science (New York, N.Y.)\| PubMed ID: 18927392	2008
CYP17 (T34C), CYP19 (Trp39Arg), and FGFR2 (C906T) polymorphisms and the risk of breast cancer in south Indian women. Asian Pacific journal of cancer prevention : APJCP\| PubMed ID: 19469636	2009
Protein sectors: evolutionary units of three-dimensional structure. Cell\| PubMed ID: 19703402	2009
Autophagy: Snapshot of the network. Nature\| PubMed ID: 20596005	2010
Cure models for estimating hospital-based breast cancer survival. Asian Pacific journal of cancer prevention : APJCP\| PubMed ID: 20843121	2010
An interdomain sector mediating allostery in Hsp70 molecular chaperones. Molecular systems biology\| PubMed ID: 20865007	2010
Prognostic factors in patients with node-negative gastric cancer: an Indian experience. World journal of surgical oncology\| PubMed ID: 21554745	2011
Hot spots for allosteric regulation on protein surfaces. Cell\| PubMed ID: 22196731	2011
XPD Lys751Gln increases the risk of breast cancer. Oncology letters\| PubMed ID: 22870145	2011
Quantifying the rhythm of KaiB-C interaction for in vitro cyanobacterial circadian clock. PloS one\| PubMed ID: 22900029	2012
The spatial architecture of protein function and adaptation. Nature\| PubMed ID: 23041932	2012
Evolution-based design of proteins. Methods in enzymology\| PubMed ID: 23422432	2013
Systems-level characterization of the kernel mechanism of the cyanobacterial circadian oscillator. Bio Systems\| PubMed ID: 24444761	2014
A novel allosteric mechanism in the cysteine peptidase cathepsin K discovered by computational methods. Nature communications\| PubMed ID: 24518821	2014
Evolvability as a function of purifying selection in TEM-1 β-lactamase. Cell\| PubMed ID: 25723163	2015
Paediatric retinoblastoma in India: evidence from the National Cancer Registry Programme. Asian Pacific journal of cancer prevention : APJCP\| PubMed ID: 26028071	2015
Evolution-Based Functional Decomposition of Proteins. PLoS computational biology\| PubMed ID: 27254668	2016
Origins of Allostery and Evolvability in Proteins: A Case Study. Cell\| PubMed ID: 27321669	2016
The Context-Dependence of Mutations: A Linkage of Formalisms. PLoS computational biology\| PubMed ID: 27337695	2016