enforced-activation-enhancer-rnas-situ-through-dcas9-synergistic

Enforced Activation of Enhancer RNAs In Situ through the dCas9 Synergistic Activation Mediator System

Enhancers are pivotal genomic elements scattered through the mammalian genome and dictate tissue-specific gene expression programs. Increasing evidence ...

University of Texas Health Science Center

Enhancer RNA (eRNA) is a type of noncoding RNA transcribed from the enhancer. Although critical roles of eRNA in gene transcription control have been increasingly realized, the systemic landscape and potential function of eRNAs in cancer remains largely unexplored. Here, we report the integration of multi-omics and pharmacogenomics data across large-scale patient samples and cancer cell lines. We observe a cancer-/lineage-specificity of eRNAs, which may be largely driven by tissue-specific TFs. eRNAs are involved in multiple cancer signaling pathways through putatively regulating their target genes, including clinically actionable genes and immune checkpoints. They may also affect drug response by within-pathway or cross-pathway means. We characterize the oncogenic potential and therapeutic liability of one eRNA, NET1e, supporting the clinical feasibility of eRNA-targeted therapy. We identify a panel of clinically relevant eRNAs and developed a user-friendly data portal. Our study reveals the transcriptional landscape and clinical utility of eRNAs in cancer.

Joanna Krakowiak

Department of Biochemistry and Molecular Biology,
McGovern Medical School,
Department of Biochemistry and Molecular Biology, McGovern Medical School

University of Texas Health Science Center

Enforced Activation of Enhancer RNAs In Situ through the dCas9 Synergistic Activation Mediator System

Joanna Krakowiak

.css-o250i3{font-size:18px;font-family:Open Sans,sans-serif;line-height:21.6px;}Department of Biochemistry and Molecular Biology,McGovern Medical School,Department of Biochemistry and Molecular Biology, McGovern Medical School

University of Texas Health Science Center

Enforced Activation of Enhancer RNAs In Situ through the dCas9 Synergistic Activation Mediator System

Department of Biochemistry and Molecular Biology,
McGovern Medical School,
Department of Biochemistry and Molecular Biology, McGovern Medical School