Katrin Marcus

Differential analysis of phosphorylated proteins in resting and thrombin-stimulated human platelets.

"Does understanding the brain need proteomics and does understanding proteomics need brains?"--Second HUPO HBPP Workshop hosted in Paris.

Two-dimensional polyacrylamide gel electrophoresis for platelet proteomics.

Tryptic transpeptidation products observed in proteome analysis by liquid chromatography-tandem mass spectrometry.

Application of fluorescence difference gel electrophoresis saturation labelling for the analysis of microdissected precursor lesions of pancreatic ductal adenocarcinoma.

HUPO BPP Workshop on Mouse Models for Neurodegeneration--Choosing the right models.

5th HUPO BPP Bioinformatics Meeting at the European Bioinformatics Institute in Hinxton, UK--Setting the analysis frame.

Pilot study of the Human Proteome Organisation Brain Proteome Project: applying different 2-DE techniques to monitor proteomic changes during murine brain development.

Multidimensional chromatography: a powerful tool for the analysis of membrane proteins in mouse brain.

A new fast method for nanoLC-MALDI-TOF/TOF-MS analysis using monolithic columns for peptide preconcentration and separation in proteomic studies.

The amyloid precursor protein intracellular domain (AICD) as modulator of gene expression, apoptosis, and cytoskeletal dynamics-relevance for Alzheimer's disease.

Keratin 23, a novel DPC4/Smad4 target gene which binds 14-3-3ε.

A systems biology approach to dynamic modeling and inter-subject variability of statin pharmacokinetics in human hepatocytes.

A53T-alpha-synuclein-overexpression in the mouse nigrostriatal pathway leads to early increase of 14-3-3 epsilon and late increase of GFAP.

Sense and nonsense of pathway analysis software in proteomics.

Transplantation of human umbilical cord blood cells mediated beneficial effects on apoptosis, angiogenesis and neuronal survival after hypoxic-ischemic brain injury in rats.

The amyloid precursor protein (APP) family members are key players in S-adenosylmethionine formation by MAT2A and modify BACE1 and PSEN1 gene expression-relevance for Alzheimer's disease.

A ternary complex consisting of AICD, FE65, and TIP60 down-regulates Stathmin1.

Stepwise isolation of human peripheral erythrocytes, T lymphocytes, and monocytes for blood cell proteomics.

A combined laser microdissection and mass spectrometry approach reveals new disease relevant proteins accumulating in aggregates of filaminopathy patients.

Changes in Interleukin-1 alpha serum levels after transplantation of umbilical cord blood cells in a model of perinatal hypoxic-ischemic brain damage.

Proteomic analysis of alterations induced by perinatal hypoxic-ischemic brain injury.

Identification and characterization of two distinct PPP1R2 isoforms in human spermatozoa.

FE65 regulates and interacts with the Bloom syndrome protein in dynamic nuclear spheres - potential relevance to Alzheimer's disease.

Early diagnosis of neurodegenerative diseases - the long awaited Holy Grail and bottleneck of modern brain research - 19th HUPO BPP workshop: May 22-24, 2013, Dortmund, Germany.

Not so pseudo: the evolutionary history of protein phosphatase 1 regulatory subunit 2 and related pseudogenes.

Amyloid beta a4 precursor protein-binding family B member 1 (FE65) interactomics revealed synaptic vesicle glycoprotein 2A (SV2A) and sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (SERCA2) as new binding proteins in the human brain.

Overexpression of the calpain-specific inhibitor calpastatin reduces human alpha-Synuclein processing, aggregation and synaptic impairment in [A30P]αSyn transgenic mice.

Internal ribosomal entry site (IRES) activity generates endogenous carboxyl-terminal domains of Cx43 and is responsive to hypoxic conditions.

Frontiers in neurodegeneration--new insights and prospects--20th HUPO BPP Workshop: 15 September 2013, Yokohama, Japan.

Chromophore composition of the phycobiliprotein Cr-PC577 from the cryptophyte Hemiselmis pacifica.

Identification of a novel human LAP1 isoform that is regulated by protein phosphorylation.

The challenge of on-tissue digestion for MALDI MSI- a comparison of different protocols to improve imaging experiments.

Indirect protein quantification of drug-transforming enzymes using peptide group-specific immunoaffinity enrichment and mass spectrometry.

Primary Central Nervous System (CNS) Lymphoma B Cell Receptors Recognize CNS Proteins.

Low-bias phosphopeptide enrichment from scarce samples using plastic antibodies.

Amyloid-β as a biomarker for Alzheimer's disease: quantification methods in body fluids.

Myofibrillar instability exacerbated by acute exercise in filaminopathy.

Nuclear spheres modulate the expression of BEST1 and GADD45G.

PAA: an R/bioconductor package for biomarker discovery with protein microarrays.

Key players in neurodegenerative disorders in focus-New insights into the proteomic profile of Alzheimer's disease, schizophrenia, ALS, and multiple sclerosis-24th HUPO BPP Workshop: September 29, 2015, Vancouver, Canada.

Mutant desmin substantially perturbs mitochondrial morphology, function and maintenance in skeletal muscle tissue.

Membrane tethering of APP c-terminal fragments is a prerequisite for T668 phosphorylation preventing nuclear sphere generation.

Validation of molecularly imprinted polymers for side chain selective phosphopeptide enrichment.

Proteomic characterization of neuromelanin granules isolated from human substantia nigra by laser-microdissection.

Proteomics of rimmed vacuoles define new risk allele in inclusion body myositis.

Morphological Plasticity of Emerging Purkinje Cells in Response to Exogenous VEGF.

Metabolic profiling of body fluids and multivariate data analysis.

Strategies in relative and absolute quantitative mass spectrometry based proteomics.

Spatial and molecular resolution of diffuse malignant mesothelioma heterogeneity by integrating label-free FTIR imaging, laser capture microdissection and proteomics.

BioInfra.Prot: A comprehensive proteomics workflow including data standardization, protein inference, expression analysis and data publication.

Protective effects on the retina after ranibizumab treatment in an ischemia model.

Distinct metabolomic signature in cerebrospinal fluid in early parkinson's disease.

One gene, two proteins: coordinated production of a copper chaperone by differential transcript formation and translational frameshifting in Escherichia coli.

Molecularly imprinted polymers synthesized via template immobilization on fumed silica nanoparticles for the enrichment of phosphopeptides.

Hsp90-downregulation influences the heat-shock response, innate immune response and onset of oocyte development in nematodes.

Autophagy inhibition promotes SNCA/alpha-synuclein release and transfer via extracellular vesicles with a hybrid autophagosome-exosome-like phenotype.

Editorial: Breakthroughs in top-down proteomics.

Label-free identification of myopathological features with coherent anti-Stokes Raman scattering.

Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry.

Landscape of pain in Parkinson's disease: impact of gender differences.

Protein Inference Using PIA Workflows and PSI Standard File Formats.

Protein variability in cerebrospinal fluid and its possible implications for neurological protein biomarker research.

Quantifying changes in the bacterial thiol redox proteome during host-pathogen interaction.

Intricate Crosstalk Between Lipopolysaccharide, Phospholipid and Fatty Acid Metabolism in Modulates Proteolysis of LpxC.

Integrated Fourier Transform Infrared Imaging and Proteomics for Identification of a Candidate Histochemical Biomarker in Bladder Cancer.

Noninvasive diagnosis of urothelial cancer in urine using DNA hypermethylation signatures-Gender matters.

The microRNA miR-375-3p and the Tumor Suppressor NDRG2 are Involved in Sporadic Amyotrophic Lateral Sclerosis.

Effects of 12 Weeks of Hypertrophy Resistance Exercise Training Combined with Collagen Peptide Supplementation on the Skeletal Muscle Proteome in Recreationally Active Men.

IgA autoantibodies against native myelin basic protein in a patient with MS.

Human tear fluid proteome dataset for usage as a spectral library and for protein modeling.

CSF Sample Preparation for Data-Independent Acquisition.

Co-extraction for Metabolomics and Proteomics from a Single CSF Sample.

Chaperones in sporadic inclusion body myositis-Validation of proteomic data.

CRN2 binds to TIMP4 and MMP14 and promotes perivascular invasion of glioblastoma cells.

Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition.

A spiked human proteomic dataset from human osteogenic differentiated BMSCs and ASCs for use as a spectral library, for modelling pathways as well as protein mapping.

A metastable subproteome underlies inclusion formation in muscle proteinopathies.

Let me infuse this for you - A way to solve the first YPIC challenge.

The product PACRG promotes TNF signaling by stabilizing LUBAC.

Blood Contamination in CSF and Its Impact on Quantitative Analysis of Alpha-Synuclein.

CalibraCurve: A Tool for Calibration of Targeted MS-Based Measurements.

The process of somatic hypermutation increases polyreactivity for central nervous system antigens in primary central nervous system lymphoma.

Multiomic elucidation of a coding 99-mer repeat-expansion skeletal muscle disease.

miR-129-5p and miR-130a-3p Regulate VEGFR-2 Expression in Sensory and Motor Neurons during Development.

Glucocorticoid receptor complexes form cooperatively with the Hsp90 co-chaperones Pp5 and FKBPs.

Human cerebrospinal fluid data for use as spectral library, for biomarker research.

What Room for Two-Dimensional Gel-Based Proteomics in a Shotgun Proteomics World?

Homozygous expression of the myofibrillar myopathy-associated p.W2710X filamin C variant reveals major pathomechanisms of sarcomeric lesion formation.

How Do the Different Proteomic Strategies Cope with the Complexity of Biological Regulations in a Multi-Omic World? Critical Appraisal and Suggestions for Improvements.

A patient-based model of RNA mis-splicing uncovers treatment targets in Parkinson's disease.

The first versatile human iPSC-based model of ectopic virus induction allows new insights in RNA-virus disease.

New Approaches to Critical Illness Polyneuromyopathy: High-Resolution Neuromuscular Ultrasound Characteristics and Cytokine Profiling.

Proteomic Characterization of Synaptosomes from Human Substantia Nigra Indicates Altered Mitochondrial Translation in Parkinson's Disease.

MaCPepDB: A Database to Quickly Access All Tryptic Peptides of the UniProtKB.

Lysine 53 Acetylation of Cytochrome in Prostate Cancer: Warburg Metabolism and Evasion of Apoptosis.

MicroRNAs from extracellular vesicles as a signature for Parkinson's disease.

Good Old-Fashioned Protein Concentration Determination by Amino Acid Analysis.

Protein Quantification Using the "Rapid Western Blot" Approach.

Proteome Analysis with Classical 2D-PAGE.

Differential Proteome Analysis Using 2D-DIGE.

Quantitative Mass Spectrometry-Based Proteomics: An Overview.

Establishing a Custom-Fit Data-Independent Acquisition Method for Label-Free Proteomics.

HSP-90/kinase complexes are stabilized by the large PPIase FKB-6.

Advanced Fiber Type-Specific Protein Profiles Derived from Adult Murine Skeletal Muscle.

Rat retinae data for use as spectral library, for pathway remodeling as well as protein mapping.

FLNC-Associated Myofibrillar Myopathy: New Clinical, Functional, and Proteomic Data.

The β-Subunit of Voltage-Gated Calcium Channels Regulates Cardiomyocyte Hypertrophy.

N471D WASH complex subunit strumpellin knock-in mice display mild motor and cardiac abnormalities and BPTF and KLHL11 dysregulation in brain tissue.

CSF Diagnostics: A Potentially Valuable Tool in Neurodegenerative and Inflammatory Disorders Involving Motor Neurons: A Review.

Nematode CDC-37 and DNJ-13 form complexes and can interact with HSP-90.