Section of Developmental Genomics,
Laboratory of Biochemistry and Genetics,
National Institute of Diabetes and Kidney and Digestive Diseases,
Section of Developmental Genomics, Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Kidney and Digestive Diseases
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Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis.
Genome research Dec, 2000 | Pubmed ID: 11116097
Sex determination signals control ovo-B transcription in Drosophila melanogaster germ cells.
Genetics Feb, 2002 | Pubmed ID: 11861560
Functional conservation for lipid storage droplet association among Perilipin, ADRP, and TIP47 (PAT)-related proteins in mammals, Drosophila, and Dictyostelium.
The Journal of biological chemistry Aug, 2002 | Pubmed ID: 12077142
Fly factory.
Genome research Jul, 2002 | Pubmed ID: 12097337
Gene expression neighborhoods.
Journal of biology , 2002 | Pubmed ID: 12144705
Drosophila melanogaster, two years into the post-genomic era.
Genome biology Jun, 2002 | Pubmed ID: 12184804
Genetic control of germline sexual dimorphism in Drosophila.
International review of cytology , 2002 | Pubmed ID: 12211627
Paucity of genes on the Drosophila X chromosome showing male-biased expression.
Science (New York, N.Y.) Jan, 2003 | Pubmed ID: 12511656
How many genes in a genome?
Genome biology , 2003 | Pubmed ID: 14709168
FlyGEM, a full transcriptome array platform for the Drosophila community.
Genome biology , 2004 | Pubmed ID: 15003122
Battle of the Xs.
BioEssays : news and reviews in molecular, cellular and developmental biology May, 2004 | Pubmed ID: 15112234
Molecular pathology of the MEN1 gene.
Annals of the New York Academy of Sciences Apr, 2004 | Pubmed ID: 15153434
A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults.
Genome biology , 2004 | Pubmed ID: 15186491
Drosophila microarray platforms.
Briefings in functional genomics & proteomics Jul, 2003 | Pubmed ID: 15239930
Core promoter sequences contribute to ovo-B regulation in the Drosophila melanogaster germline.
Genetics Jan, 2005 | Pubmed ID: 15371353
X for intersection: retrotransposition both on and off the X chromosome is more frequent.
Trends in genetics : TIG Jan, 2005 | Pubmed ID: 15680505
A non-random walk through the genome.
Genome biology , 2005 | Pubmed ID: 15833129
Global analysis of X-chromosome dosage compensation.
Journal of biology , 2006 | Pubmed ID: 16507155
One hundred years of high-throughput Drosophila research.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology , 2006 | Pubmed ID: 16821132
Comparative genomics of Drosophila and human core promoters.
Genome biology , 2006 | Pubmed ID: 16827941
Genetic interactions between Drosophila melanogaster menin and Jun/Fos.
Developmental biology Oct, 2006 | Pubmed ID: 16930585
Drosophila mojoless, a retroposed GSK-3, has functionally diverged to acquire an essential role in male fertility.
Molecular biology and evolution Mar, 2007 | Pubmed ID: 17179138
Dosage compensation goes global.
Current opinion in genetics & development Apr, 2007 | Pubmed ID: 17307352
Sex-specific DoublesexM expression in subsets of Drosophila somatic gonad cells.
BMC developmental biology Oct, 2007 | Pubmed ID: 17935627
Constraint and turnover in sex-biased gene expression in the genus Drosophila.
Nature Nov, 2007 | Pubmed ID: 17994089
Demasculinization of X chromosomes in the Drosophila genus.
Nature Nov, 2007 | Pubmed ID: 17994090
Sex, dose, and equality.
PLoS biology Dec, 2007 | Pubmed ID: 18162049
The sex chromosome that refused to die.
BioEssays : news and reviews in molecular, cellular and developmental biology May, 2008 | Pubmed ID: 18404685
COPI complex is a regulator of lipid homeostasis.
PLoS biology Nov, 2008 | Pubmed ID: 19067489
Drosophila germline sex determination: integration of germline autonomous cues and somatic signals.
Current topics in developmental biology , 2008 | Pubmed ID: 19118665
An evolutionary consequence of dosage compensation on Drosophila melanogaster female X-chromatin structure?
BMC genomics Jan, 2010 | Pubmed ID: 20051121
Expression in aneuploid Drosophila S2 cells.
PLoS biology Feb, 2010 | Pubmed ID: 20186269
Overexpression of TUF1 restores respiratory growth and fluconazole sensitivity to a Cryptococcus neoformans vad1Delta mutant.
Microbiology (Reading, England) Aug, 2010 | Pubmed ID: 20430817
Germline-dependent gene expression in distant non-gonadal somatic tissues of Drosophila.
BMC genomics Jun, 2010 | Pubmed ID: 20515475
Transcriptional regulation by CHIP/LDB complexes.
PLoS genetics Aug, 2010 | Pubmed ID: 20730086
Identification of functional elements and regulatory circuits by Drosophila modENCODE.
Science (New York, N.Y.) Dec, 2010 | Pubmed ID: 21177974
Microarrays, deep sequencing and the true measure of the transcriptome.
BMC biology May, 2011 | Pubmed ID: 21627854
Lipid profiles of female and male Drosophila.
BMC research notes Jun, 2011 | Pubmed ID: 21676256
Synthetic spike-in standards for RNA-seq experiments.
Genome research Sep, 2011 | Pubmed ID: 21816910
Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster.
Nature genetics Oct, 2011 | Pubmed ID: 22019781
Mediation of Drosophila autosomal dosage effects and compensation by network interactions.
Genome biology Apr, 2012 | Pubmed ID: 22531030
Genomics of sex determination in Drosophila.
Briefings in functional genomics Sep, 2012 | Pubmed ID: 23023665
Simplification and desexualization of gene expression in self-fertile nematodes.
Current biology : CB Nov, 2012 | Pubmed ID: 23103191
Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki).
BMC bioinformatics Nov, 2013 | Pubmed ID: 24209455
Transcriptional effects of gene dose reduction.
Biology of sex differences Mar, 2014 | Pubmed ID: 24581086
Comparative validation of the D. melanogaster modENCODE transcriptome annotation.
Genome research Jul, 2014 | Pubmed ID: 24985915
Flipping the doublesex switch with a piRNA.
Genome biology Jun, 2014 | Pubmed ID: 25002081
Comparative analysis of the transcriptome across distant species.
Nature Aug, 2014 | Pubmed ID: 25164755
DNA copy number evolution in Drosophila cell lines.
Genome biology Aug, 2014 | Pubmed ID: 25262759
X Chromosome and Autosome Dosage Responses in Drosophila melanogaster Heads.
G3 (Bethesda, Md.) Apr, 2015 | Pubmed ID: 25850426
Sxl-Dependent, tra/tra2-Independent Alternative Splicing of the Drosophila melanogaster X-Linked Gene found in neurons.
G3 (Bethesda, Md.) Oct, 2015 | Pubmed ID: 26511498
Developmental biology: Females have a lot of guts.
Nature Feb, 2016 | Pubmed ID: 26887491
A Class of Diacylglycerol Acyltransferase 1 Inhibitors Identified by a Combination of Phenotypic High-throughput Screening, Genomics, and Genetics.
EBioMedicine Jun, 2016 | Pubmed ID: 27428418
External RNA Controls Consortium Beta Version Update.
Journal of genomics , 2016 | Pubmed ID: 27512518
Effects of Gene Dose, Chromatin, and Network Topology on Expression in Drosophila melanogaster.
PLoS genetics Sep, 2016 | Pubmed ID: 27599372
Microenvironmental Gene Expression Plasticity Among Individual Drosophila melanogaster.
G3 (Bethesda, Md.) Dec, 2016 | Pubmed ID: 27770026
Differences in Allelic Frequency and CDRH3 Region Limit the Engagement of HIV Env Immunogens by Putative VRC01 Neutralizing Antibody Precursors.
Cell reports Nov, 2016 | Pubmed ID: 27806295
Expressed Structurally Stable Inverted Duplicates in Mammalian Genomes as Functional Noncoding Elements.
Genome biology and evolution Apr, 2017 | Pubmed ID: 28338961
Drosophila melanogaster positive transcriptional elongation factors regulate metabolic and sex-biased expression in adults.
BMC genomics May, 2017 | Pubmed ID: 28521739
Exploring Effects of Sex and Diet on Head Gene Expression.
Journal of genomics , 2017 | Pubmed ID: 29109800
Dosage-Dependent Expression Variation Suppressed on the Male Chromosome.
G3 (Bethesda, Md.) Feb, 2018 | Pubmed ID: 29242386
Reprogramming of regulatory network using expression uncovers sex-specific gene regulation in Drosophila.
Nature communications Oct, 2018 | Pubmed ID: 30283019
Non-canonical Drosophila X chromosome dosage compensation and repressive topologically associated domains.
Epigenetics & chromatin Oct, 2018 | Pubmed ID: 30355339
Re-annotation of eight genomes.
Life science alliance Dec, 2018 | Pubmed ID: 30599046
Correction to: DNA copy number evolution in Drosophila cell lines.
Genome biology Mar, 2019 | Pubmed ID: 30857560
Author Correction: Reprogramming of regulatory network using expression uncovers sex-specific gene regulation in Drosophila.
Nature communications Jul, 2019 | Pubmed ID: 31358758
Heterochromatin Stabilization Requires the Zinc-Finger Protein Small Ovary.
Genetics Nov, 2019 | Pubmed ID: 31558581
Sperm Head-Tail Linkage Requires Restriction of Pericentriolar Material to the Proximal Centriole End.
Developmental cell Apr, 2020 | Pubmed ID: 32169161
Drosophila balancer reengineering using polycistronic gRNA for CRISPR/Cas9 gene editing.
microPublication biology Nov, 2018 | Pubmed ID: 32550371
is a 5' UTR deletion of the essential gene in .
microPublication biology May, 2020 | Pubmed ID: 32550484
Dynamic sex chromosome expression in Drosophila male germ cells.
Nature communications Feb, 2021 | Pubmed ID: 33563972
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly.
Science (New York, N.Y.) Mar, 2022 | Pubmed ID: 35239393
Stochastic Modeling of Gene Expression Evolution Uncovers Tissue- and Sex-Specific Properties of Expression Evolution in the Genus.
Journal of computational biology : a journal of computational molecular cell biology Jan, 2023 | Pubmed ID: 36037023
NetREX-CF integrates incomplete transcription factor data with gene expression to reconstruct gene regulatory networks.
Communications biology Nov, 2022 | Pubmed ID: 36418514
Creation of a new X chromosome balancer, ( ), using the CRISPR/Cas9 gene-editing system.
microPublication biology , 2022 | Pubmed ID: 36439394
Whole Animal Feeding FLat (WAFFL): a complete and comprehensive validation of a novel, high-throughput fly experimentation system.
G3 (Bethesda, Md.) Mar, 2023 | Pubmed ID: 36650008
Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of testes.
eLife Feb, 2023 | Pubmed ID: 36795469
Jessica M. Holsopple*,1,2,
Shannon R. Smoot*,1,
Ellen M. Popodi1,2,
John K. Colbourne3,
Joseph R. Shaw4,
Brian Oliver5,
Thomas C. Kaufman1,
Jason M. Tennessen1
1Department of Biology, Indiana University,
2Bloomington Drosophila Stock Center, Department of Biology, Indiana University,
3School of Biosciences, University of Birmingham,
4O'Neill School of Public and Environmental Affairs, Indiana University,
5Section of Developmental Genomics, Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Kidney and Digestive Diseases, National Institutes of Health
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