We thank Lic. Jes&#250;s Fuentes Gonz&#225;lez and N&#233;stor Iv&#225;n Robles Olivares for their assistance in filming the video footage. We acknowledge the generous gifts by Dr. Antonia Gutierrez Mora of CIATEJ (Theobroma cacao plants). We also thank CIATEJ and Laboratorio Nacional PlanTECC, M&#233;xico, for facility support. H.E.H.D. (CVU: 1135375) conducted master studies with funding from the Consejo Nacional de Humanidades, Ciencia y Tecnolog&#237;a, M&#233;xico (CONAHCYT). R.U.L. acknowledges support from Consejo Estatal de Ciencia y Tecnolog&#237;a de Jalisco (COECYTJAL), and Secretar&#237;a de Innovaci&#243;n Ciencia y Tecnolog&#237;a (SICYT), Jalisco, M&#233;xico (Grant 7270-2018).

1. Agrobacterium tumefaciens culture
<ol>
	<li>Thaw electrocompetent cells of Agrobacterium tumefaciens strain LBA4404.</li>
	<li>Add 1 mL of Yeast Malt (YM; Table 1) broth to a 17 mm x 100 mm culture tube. Save this tube for later, and keep it at room temperature (RT).</li>
	<li>In a 1.5 mL microfuge tube, add 30 &#181;L of the thawed Agrobacterium cells and 100-250 ng (up to 5 &#181;L) of the DNA containing 35S:RUBY. Mix gently.<br...

In Planta Transient Transformation of Cacao Plants Using &lt;em&gt;Agrobacterium tumefaciens&lt;/em&gt;

<ol>
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K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Construction+of+an+infectious+clone+of+the+Badnavirus+Cacao+Swollen+Shoot+Ghana+M+Virus+and+infectivity+by+gene+gun-+and+Agrobacterium-mediated+inoculation.">Construction of an infectious clone of the Badnavirus Cacao Swollen Shoot Ghana M Virus and infectivity by gene gun- and Agrobacterium-mediated inoculation.</a> Frontiers in Agronomy. 3, 774863 (2021).</li><li>Fister, A. S., Landherr, L., Maximova, S. N., Guiltinan, M. 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K., Passricha, N., Tuteja, R., Kharb, P., Tuteja, N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=In+planta+transformation:+A+smart+way+of+crop+improvement.">In planta transformation: A smart way of crop improvement.</a> Advancement in Crop Improvement Techniques. 21, 351-362 (2020).</li><li>Huda, K. 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In this work, we presented an efficient, low-cost agroinfiltration protocol for the in planta transient transformation of woody plants, using cacao plants as an example. Given the well-known constraint that the cuticle of leaves represents for the transformation of plant tissues, we concentrated on developing a strategy to facilitate agroinfiltration by vacuum in woody plants, which are usually recalcitrant to this procedure.
The achieved vacuum pressure inside the vacuum chamber was ...

Plant genetic transformation methods are essential for testing the biological functions of genes and are especially useful today given the large number of uncharacterized genes predicted in the post-genomic era1. These methods can be used to obtain fully transformed lines or to express genes transiently. Stable transformation occurs when the foreign DNA the host has taken up becomes fully and irreversibly integrated into the host genome, and the genetic modifications are passed down to subsequent generations. Transient expression, known as transient transformation, occurs from the multiple copies of T-DNA transferred by Agrobacterium into the cell, which have not been integrated into the host genome, and peaks 2-4 days post infection2. 
It is worth noting that transient expression assays are often sufficient for the functional characterization of genes and can offer several advantages over stable transformation. For example, transient transformation does not require tissue culture-based regeneration procedures. Another advantage is that it is compatible with in planta functional analysis of genes, existing several successful examples of protocols well standardized for model plant species, such as Arabidopsis thaliana3 and Nicotiana benthamiana4, but still limited in non-model species5.
The development of transient assays relies on the availability of efficient gene transfer methods. For this, the most popular approaches are based on Agrobacterium infiltration, which takes advantage of Agrobacterium's unique ability to transfer DNA to plant cells6. Another useful tool for these analyses is the use of reporter genes, such as green fluorescent proteins (GFP), &#946;-glucuronidase (GUS), luciferase, or RUBY, all of which are employed to track transformation events. Among these reporter systems, RUBY is currently the easiest to visualize and relies on the conversion of tyrosine into betalains through three enzymatic step reactions. As opposed to other reporter systems, the resultant betalains can be readily observed as brightly colored pigments on transformed plant tissue without the need for sophisticated equipment or additional reactants7.
When infiltrating an Agrobacterium suspension into the intercellular space of the leaf mesophyll, the most critical step for successful agroinfection is overcoming the physical barrier imposed by the epidermal cuticle of the leaves8. While for some plants, a pressure gradient created with a needle-less syringe (syringe Agroinfiltration) is enough for an efficient agroinfiltration, as occurs in Nicotiana benthamiana9, other plant species may require a larger pressure gradient such as the one created with the help of vacuum pumps10. In vacuum-assisted processes, agroinfiltration occurs in two steps. In the first one, vacuum serves to subject the plant material to reduced pressure, forcing the release of gases from the mesophyll air spaces through stomata and wounds. Then, during a repressurization phase, the Agrobacterium suspension infiltrates the intercellular spaces via the stomata and wounds11. 
Compared to syringe infiltration, vacuum infiltration allows for higher usage frequency, repeatability, and the ability to control pressure and duration at every stage of the infiltration process10. In leaves of different plant species such as spinach (Spinacia oleracea)12, peony (a woody perennial) (Paeonia ostii)13, and Cowpea (Vigna unguiculata)14, vacuum agroinfiltration protocols achieved a deeper infiltration rate than syringe infiltration. Similarly, in tomato (Lycopersicon esculentum)15, and gerbera (Gerbera hybrida)16, vacuum agroinfiltration produced stronger and more uniform gene silencing than syringe infiltration. An additional advantage of vacuum infiltration is the lower dependence on genotype, compared to syringe infiltration, which was observed recently in three citrus varieties (Fortunella obovata, Citrus limon, and C. grandis)17. However, when trying to apply vacuum agroinfiltration to plants that are too large to fit into desiccators, the size of the vacuum chambers can be a limitation, as typically occurs with tropical woody plants.
Below, we describe a protocol that overcomes the spatial limitation of vacuum chambers, testing its utility for in planta transient transformation of cacao leaves. We present the first localized vacuum infiltration method for cacao, which does not require additional equipment and even allows the use of the same laboratory desiccators used for the infiltration of the whole plant, but with a simple adaptation that allows the access of a part of the plant inside the vacuum chamber, allowing its use at different stages of plant development. To test the usefulness of the localized vacuum infiltration method proposed, we selected cacao as a proxy of a large-leaved tropical plant species that is difficult to transform. Using this localized infiltration method, we recently reported the first in planta transient expression in avocado by Agrobacterium-mediated vacuum infiltration with conditions previously optimized for detached leaves18, and here we report the first in planta transient expression in cacao.

<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>35S:RUBY plasmid</td>
			<td>Addgene</td>
			<td>160908</td>
			<td>http://n2t.net/addgene:160908 ; RRID:Addgene_160908</td>
		</tr>
		<tr>
			<td>1 mm electroporation cuvette</td>
			<td>Thermo Fisher Scientific&#160;</td>
			<td>FB101</td>
			<td>Fisherbrand&#160;Electroporation Cuvettes Plus</td>
		</tr>
		<tr>
			<td>Desiccator</td>
			<td>Bel-Art SP SCIENCEWARWE</td>
			<td>F42400-2121</td>
			<td></td>
		</tr>
		<tr>
			<td>Freeze dryer</td>
			<td>LABCONCO</td>
			<td>700402040</td>
			<td></td>
		</tr>
		<tr>
			<td>K2HPO4</td>
			<td>Sigma Aldrich</td>
			<td>P8281-500G</td>
			<td>For YM medium add 0.38 g/L</td>
		</tr>
		<tr>
			<td>LBA4404 ElectroCompetent Agrobacterium</td>
			<td>Intact Genomics USA</td>
			<td>1285-12</td>
			<td>https://intactgenomics.com/product/lba4404-electrocompetent-agrobacterium/</td>
		</tr>
		<tr>
			<td>Mannitol</td>
			<td>Sigma Aldrich</td>
			<td>63560-250G-F</td>
			<td>For YM medium add 10 g/L</td>
		</tr>
		<tr>
			<td>MES</td>
			<td>Sigma Aldrich</td>
			<td>PHG0003</td>
			<td>(For LB, YM and resuspension medium) add 1.95 g/L (10mM)</td>
		</tr>
		<tr>
			<td>MgCl2</td>
			<td>Sigma Aldrich</td>
			<td>M8266</td>
			<td>For resuspension medium add 0.952 g/L (10 mM)</td>
		</tr>
		<tr>
			<td>MgSO4&#183;7H20</td>
			<td>Sigma Aldrich</td>
			<td>63138-1KG</td>
			<td>For YM medium add 0.204 g/L</td>
		</tr>
		<tr>
			<td>MicroPulser Electroporation Apparatus</td>
			<td>Biorad&#160;</td>
			<td>165-2100</td>
			<td></td>
		</tr>
		<tr>
			<td>NaCl</td>
			<td>Karal</td>
			<td>60552</td>
			<td>For LB medium add 5 g/L; For YM medium add 0.1 g/L</td>
		</tr>
		<tr>
			<td>NanoDrop One Microvolume UV-Vis Spectrophotometer</td>
			<td>Thermo Fisher Scientific&#160;</td>
			<td>13-400-518</td>
			<td></td>
		</tr>
		<tr>
			<td>President Silicone Impression material</td>
			<td>COLTENE</td>
			<td>60019938</td>
			<td></td>
		</tr>
		<tr>
			<td>Rifampicin&#160;</td>
			<td>Gold-Bio</td>
			<td>R-120-1</td>
			<td>(100 mg/mL)</td>
		</tr>
		<tr>
			<td>Silicone Impression material gun</td>
			<td>Andent</td>
			<td>TBT06</td>
			<td></td>
		</tr>
		<tr>
			<td>Spectinomycin</td>
			<td>Gold-Bio</td>
			<td>S-140-SL10</td>
			<td>(100 mg/mL)</td>
		</tr>
		<tr>
			<td>Streptomycin</td>
			<td>Gold-Bio</td>
			<td>S-150-SL10</td>
			<td>(100 mg/mL)</td>
		</tr>
		<tr>
			<td>Tryptone enzymatic digest from casein</td>
			<td>Sigma Aldrich</td>
			<td>95039-1KG-F</td>
			<td>For LB medium add 10 g/L</td>
		</tr>
		<tr>
			<td>Yeast extract</td>
			<td>MCD LAB</td>
			<td>9031</td>
			<td>For LB medium add 5 g/L; For YM medium add 0.4 g/L</td>
		</tr>
	</tbody>
</table>

vacuum-forced agroinfiltration for in planta transformation of recalcitrant plants: cacao as a case study

Transient in planta transformation is a fast and cost-effective alternative for plant genetic transformation. Most protocols for in planta transformation rely on the use of Agrobacterium-mediated transformation. However, the protocols currently in use are standardized for small-sized plants due to the physical and economic constraints of submitting large-sized plants to a vacuum treatment. This work presents an effective protocol for localized vacuum-based agroinfiltration customized for large-sized plants. To assess the efficacy of the proposed method, we tested its use in cacao plants, a tropical plant species recalcitrant to genetic transformation. Our protocol allowed applying up to 0.07 MPa vacuum, with repetitions, to a localized aerial part of cacao leaves, making it possible to force the infiltration of Agrobacterium into the intercellular spaces of attached leaves. As a result, we achieved the Agrobacterium-mediated transient in planta transformation of attached cacao leaves expressing for the RUBY reporter system. This is also the first Agrobacterium-mediated in planta transient transformation of cacao. This protocol would allow the application of the vacuum-based agroinfiltration method to other plant species with similar size constraints and open the door for the in planta characterization of genes in recalcitrant woody, large-size species.

Author Spotlight: Tissue Culture-Free &lt;em&gt;Agrobacterium&lt;/em&gt;-Mediated Transformation in Large Woody Plants

Vacuum-Forced Agroinfiltration for In planta Transformation of Recalcitrant Plants: Cacao as a Case Study

In vivo genetic methods are required to study the biological function of genes in tropical perennial species and horticultural tree crops. However, many of these species are recalcitrant to transformation in every generation. The scope of this research is to develop a simple and efficient genetic transformation method applicable to large-sized plants.I will illustrate the things. Agrobacterium-mediated genetic transformation of plants with difficult to infiltrate tissues has been made possible by forced infiltration using a vacuum pump. However, the protocols currently in use are limited to small-sized plants due to the physical and economic constraints of submitting large-sized plants to a vacuum chamber.The size of the vacuum chambers, which are usually laboratory dessicators, prevents the vacuum infiltration of plants that are too large to fit into dessicators, as is the case of tropical woody plants. We have developed a protocol for efficient localized vacuum infiltration of tropical woody plants, making in vivo genetic transformation studies of large plant species possible. This protocol allowed us to overcome plant size limitations for Agrobacterium-mediated vacuum infiltration in horticultural tree crops such as cacao and avocado.Tissue culture-free Agrobacterium-mediated transformation of attached leaves by localized vacuum infiltration can be performed in a rapid, straightforward, and cost-effective manner by laboratories that already use vacuum infiltration, since the same pump and vacuum vessel can be used with no need to add costly equipment.

This protocol presents an effective agroinfiltration method for large-sized woody plants. With this protocol, we were able to achieve a vacuum pressure of -0.07 MPa, resulting in the effective, localized infiltration of cacao leaves. In Figure 4, we observe the infiltration system setting up process, and in Figure 5, the final configuration.
<img alt="Figure 4" class="xfigimg" src="/files/ftp...

Watch this Scientific Journal Video about Vacuum-Forced Agroinfiltration for In planta Transformation of Recalcitrant Plants: Cacao as a Case Study at JoVE.com

Here, we present the first protocol for localized vacuum infiltration for in vivo studies of the genetic transformation of large-sized plants. Using this methodology, we achieved for the first time the Agrobacterium-mediated in planta transient transformation of cacao.

Transient in planta transformation is a fast and cost-effective alternative for plant genetic transformation. Most protocols for in planta transformation ...

vacuum-forced-agroinfiltration-for-planta-transformation-recalcitrant