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Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere Video (Video) | JoVE

DOI :

10.3791/57561-v

May 2nd, 2018

May 2nd, 2018

23,821 Views

1Department of Plant and Microbial Biology, University of California, Berkeley, 2Plant Gene Expression Center, USDA ARS

Here, we describe a protocol to obtain amplicon sequence data of soil, rhizosphere, and root endosphere microbiomes. This information can be used to investigate the composition and diversity of plant-associated microbial communities, and is suitable for the use with a wide range of plant species.

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