وأيد هذا العمل من خلال منحة من المعاهد القومية للصحة، والمعهد الوطني للسكري وأمراض الجهاز الهضمي والكلى، 2R01DK59558 (لGN). قدم معهد بحوث UAMS بالحركة بدعم من المعاهد الوطنية للصحة المركز الوطني للبحوث منحة UL1 الموارد RR029884 التمويل الجزئي لقياس التدفق الخلوي في كور UAMS. نشكر الدكتور Peipei بينغ (جامعة كاليفورنيا في لوس أنجلوس، لوس أنجلوس، CA) لتوفير قسامة من اتش يحمل الترميز [كدنا] متحولة السلبية (غير نشط) المهيمن PKC-ε، والدكتور ألين Samarel (جامعة لويولا الطبي؛ مايوود، IL) لتوفير قسامة من ناقلات الغدانية ترميز متحولة بالموقع جوهري من PKC-ε. كما نشكر الدكاترة. بيتر باركر وسودن بيتر (إمبريال كوليدج لندن، لندن، المملكة المتحدة) لتوفير الترميز [كدنا] نشطة جوهري PKC-ε.

<ol>
	<li>Nowak, G., Schnellmann, R. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Improved+culture+conditions+stimulate+gluconeogenesis+in+primary+cultures+of+renal+proximal+tubule+cells.">Improved culture conditions stimulate gluconeogenesis in primary cultures of renal proximal tubule cells.</a> Am. J. Physiol. 268, C1053-C1061 (1995).</li><li>Nowak, G., Schnellmann, R. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=L-ascorbic+acid+regulates+growth+and+metabolism+of+renal+cells:+improvements+in+cell+culture.">L-ascorbic acid regulates growth and metabolism of renal cells: improvements in cell culture.</a> Am. J. Physiol. 271, 2072-2080 (1996).</li><li>Ping, P., Takano, H., Zhang, J., Tang, X. L., Qiu, Y., Li, R. C., Banerjee, S., Dawn, B., Balafonova, Z., Bolli, R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Isoform-selective+activation+of+protein+kinase+C+by+nitric+oxide+in+the+heart+of+conscious+rabbits:+a+signaling+mechanism+for+both+nitric+oxide-induced+and+ischemia-induced+preconditioning.">Isoform-selective activation of protein kinase C by nitric oxide in the heart of conscious rabbits: a signaling mechanism for both nitric oxide-induced and ischemia-induced preconditioning.</a> Circ. Res. 84, 587-604 (1999).</li><li>Wotton, D., Ways, D. K., Parker, P. J., Owen, M. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Activity+of+both+Raf+and+Ras+is+necessary+for+activation+of+transcription+of+the+human+T+cell+receptor+beta+gene+by+protein+kinase+C,+Ras+plays+multiple+roles.">Activity of both Raf and Ras is necessary for activation of transcription of the human T cell receptor beta gene by protein kinase C, Ras plays multiple roles.</a> J. Biol. Chem. 268, 17975-17982 (1993).</li><li>Nowak, G., Bakajsova, D., Samarel, A. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Protein+kinase+C-&#949;+activation+induces+mitochondrial+dysfunction+and+fragmentation+in+renal+proximal+tubules.">Protein kinase C-&#949; activation induces mitochondrial dysfunction and fragmentation in renal proximal tubules.</a> Am. J. Physiol. Renal Physiol. 301, F197-F208 (2011).</li><li>Nowak, G., Clifton, G. L., Godwin, M. L., Bakajsova, D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Activation+of+ERK1/2+pathway+mediates+oxidant-induced+decreases+in+mitochondrial+function+in+renal+cells.">Activation of ERK1/2 pathway mediates oxidant-induced decreases in mitochondrial function in renal cells.</a> Am. J. Physiol. Renal Physiol. 291, 840-855 (2006).</li><li>Shaik, Z. P., Fifer, E. K., Nowak, G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Akt+activation+improves+oxidative+phosphorylation+in+renal+proximal+tubular+cells+following+nephrotoxicant+injury.">Akt activation improves oxidative phosphorylation in renal proximal tubular cells following nephrotoxicant injury.</a> Am. J. Physiol. Renal Physiol. 294, F423-F432 (2008).</li><li>Nowak, G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Protein+kinase+C-&#945;+and+ERK1/2+mediate+mitochondrial+dysfunction,+decreases+in+active+Na++transport,+and+cisplatin-induced+apoptosis+in+renal+cells.">Protein kinase C-&#945; and ERK1/2 mediate mitochondrial dysfunction, decreases in active Na+ transport, and cisplatin-induced apoptosis in renal cells.</a> J. Biol. Chem. 277, 43377-43388 (2002).</li><li>Liu, X., Godwin, M. L., Nowak, G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Protein+kinase+C-+a+inhibits+the+repair+of+oxidative+phosphorylation+after+S-(1,2-dichlorovinyl)-L-cysteine+injury+in+renal+cells.">Protein kinase C- a inhibits the repair of oxidative phosphorylation after S-(1,2-dichlorovinyl)-L-cysteine injury in renal cells.</a> Am. J. Physiol. Renal Physiol. 287, F64-F73 (2004).</li><li>Nowak, G., Price, P. M., Schnellmann, R. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Lack+of+a+functional+p21WAF1/CIP1+gene+accelerates+caspase-independent+apoptosis+induced+by+cisplatin+in+renal+cells.">Lack of a functional p21WAF1/CIP1 gene accelerates caspase-independent apoptosis induced by cisplatin in renal cells.</a> Am. J. Physiol. Renal Physiol. 285, F440-F450 (2003).</li><li>Cummings, B. S., Schnellmann, R. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cisplatin-induced+renal+cell+apoptosis:+caspase+3-dependent+and+-independent+pathways.">Cisplatin-induced renal cell apoptosis: caspase 3-dependent and -independent pathways.</a> J. Pharmacol. Exp. Ther. 302, 8-17 (2002).</li></ol>

الإعلان عن أي تضارب في المصالح.

النهج المقدمة هنا يسمح للoverexpression من نظائر الانزيمات الفردية PKC في الثقافة الأساسية للخلايا الكلى أنبوبي القريبة. هناك العديد من نقاط القوة لهذا النهج: 1. لأنها تتيح للتحقيق في الآليات التنظيمية في عدد السكان متجانسة من الخلايا (خلايا الكلى الأنبوبي الداني) التي هي ال?...

<table border="1" style=";text-align:right;direction:rtl"><tbody><tr><td> اسم كاشف </td><td> شركة </td><td> كتالوج رقم </td></tr><tr><td> الصفحي تدفق هود </td><td> شركة الكترون الحرارية </td><td> FORMA 1104 </td></tr><tr><td> 2 مل و 15 مل الأنسجة Dounce طاحونة </td><td> ويتون </td><td> 989-24607، 357544 </td></tr><tr><td> 85 و 235 ميكرون شبكة النايلون </td><td> قطع صغيرة </td><td> CMN - 0085 - 10YD CMN - 0250 - 10YD </td></tr><tr><td> 50 مل أنبوب الطرد المركزي العقيمة </td><td> BIOLOGIX </td><td> BCT-P 50BS </td></tr><tr><td> 1.5 مل أنبوب الصغيرة </td><td> Sarstedt </td><td> 72.690.001 </td></tr><tr><td> 35 × 10 مم الأطباق ثقافة عقيمة </td><td> كورنينج </td><td> 430165 </td></tr><tr><td> جوعان جهاز طرد مركزي </td><td> جوعان </td><td> جوعان CR3 11175704 الدوار: جوعان T40 </td></tr><tr&gt; <td> قابل للتعديل الجزئي الطرد المركزي </td><td> SIGMA </td><td> نموذج 1 حتي 15 </td></tr><tr><td> الأكسجين البيولوجي مراقب </td><td> YSI للإعلام </td><td> YSI الموديل 5300A </td></tr><tr><td> واحد الأكسجين الجزئي غرفة النظام </td><td> YSI للإعلام </td><td> 5356S </td></tr><tr><td> دقق الأكسجين </td><td> YSI للإعلام </td><td> 5331A </td></tr><tr><td> تعميم حمام </td><td> YSI للإعلام </td><td> 5310 </td></tr><tr><td> بوكل وستاندرد كيت غشاء </td><td> YSI للإعلام </td><td> 5775 </td></tr><tr><td> النمام المغناطيسي </td><td> YSI للإعلام </td><td> 5222 </td></tr><tr><td> مسطحة مسجل </td><td> كيب وZONEN </td><td> BD 11E </td></tr><tr><td> 48-96-جيدا وكذلك لوحات شفافة </td><td> COSTAR </td><td> 3548، 3679 </td></tr><tr><td> Thermomixer R </td><td> Eppendorf </td><td> 5355 21919 </td></tr><tr><td> شاكر المداري MAXQ 2000 </td><td> الحرارية العلمية </td><td> SHKA 2000 </td></tr><tr><td> أطياف FLUOR زائد (الامتصاصية / مضان / التلألؤ القارئ) </td><td> TECAN </td><td> F129005 </td></tr><tr><td> المياه جاكت الولايات المتحدة Autoflow التلقائية CO 2 حاضنة </td><td> NUAIRE </td><td> NU 4850 </td></tr><tr><td> 12x75 الثقافة أنابيب الاختبار البوليسترين مم للالتدفق الخلوي </td><td> فيشر العلامة التجارية </td><td> 14-961-20 </td></tr><tr><td> Axioskop الهدف المياه الغمر 63x / 0،90 W </td><td> كارل زايس </td><td> 114846 ACHROPLAN 44 00 67 </td></tr><tr><td> DMEM / F12 </td><td> Cellgro </td><td> 99 حتي 830 - PB </td></tr><tr><td> DMEM / F12 هام </td><td> سيجما </td><td> D 2906 - 1L </td></tr><tr><td> ديفيروكسامين Mesylate </td><td> Hospiرا </td><td> D110 </td></tr><tr><td> النوع الأول كولاجيناز </td><td> ورثينجتون </td><td> 4196 </td></tr><tr><td> التربسين المانع </td><td> سيجما </td><td> T 6522 - 500mg </td></tr><tr><td> 5،5 &#39;، 6،6&#39;-ثلاثي كلورو 1، 1 &#39;، 3،3&#39;-tetraethylbenzimidazolylcarbocyanine يوديد (JC-1) </td><td> إينفيتروجن </td><td> T3168 </td></tr><tr><td> Mitotracker الأحمر </td><td> إينفيتروجن </td><td> M22425 </td></tr><tr><td> ATP ضوء بارد الفحص كيت HS II </td><td> روش </td><td> 11 699 709 001 </td></tr><tr><td> Annexin V - FITC الحل </td><td> BioVision </td><td> 1001 - 200 </td></tr><tr><td> تدفق عداد الكريات </td><td> BD العلوم البيولوجية </td><td> BD FACSCalibur </td></tr></tbody></table>

assessment of mitochondrial functions and cell viability in renal cells overexpressing protein kinase c isozymes

ويشارك البروتين كيناز C (بي كي سي) عائلة من نظائر الانزيمات في العديد من العمليات الفسيولوجية والمرضية. البيانات المتوفرة لدينا تثبت أن الأخيرة PKC ينظم وظيفة الميتوكوندريا الخلوية وحالة الطاقة. تقارير عديدة أثبتت أن تفعيل ε-PKC PKC واحد ويحسن وظيفة الميتوكوندريا في القلب الإقفاري ويتوسط كارديوبروتيكتيون. في المقابل، أظهرت لنا أن تشارك PKC-α وPKC ε في nephrotoxicant التي يسببها ضعف الميتوكوندريا وموت الخلايا في خلايا الكلى. ولذلك، كان الهدف من هذه الدراسة هو تطوير نموذج في المختبر من خلايا الكلى الحفاظ على الوظائف في الميتوكوندريا بالموقع نظائر الانزيمات التي يمكن تفعيلها بشكل انتقائي أو PKC تحول دون لتحديد دورها في تنظيم الفسفرة المؤكسدة وبقاء الخلية. تم زراعة الخلايا الأولية الثقافات الكلوي أنبوبي القريبة (RPTC) في ظروف أفضل مما أسفر عن التنفس ونشاط الميتوكوندريا ميتوchondrial الانزيمات مماثلة لتلك التي في RPTC في الجسم الحي. لأن التقنيات التقليدية ترنسفكأيشن (Lipofectamine، الصعق الكهربائي) غير فعالة في الثقافات الأولية ولها آثار ضارة على وظيفة الميتوكوندريا، تم تسليم PKC-ε cDNAs متحولة إلى RPTC من خلال ناقلات الغدانية. هذا النهج القائم على النتائج في ترنسفكأيشن أكثر من 90٪ RPTC مثقف. هنا، نقدم طرق لتقييم دور PKC-ε في: 1. تنظيم التشكل الميتوكوندريا وظائف المرتبطة توليف ATP، و 2. بقاء RPTC في الثقافة الأولية. يتم تنشيط PKC-ε بواسطة overexpressing النشط جوهري PKC-ε متحولة. هو تحول دون PKC-ε بواسطة overexpressing متحولة غير نشط من PKC-ε. ويتم تقييم وظيفة الميتوكوندريا عن طريق فحص التنفس، سلامة السلسلة التنفسية، وأنشطة الجهاز التنفسي والمجمعات F 0 F 1-أتباز، ATP معدل الإنتاج، والمحتوى ATP. التنفس هوssessed في ديجيتونين-permeabilized RPTC كدولة 3 (التنفس القصوى في وجود ركائز الزائدة وADP) وفكت التنفس. يتم تقييم سلامة السلسلة التنفسية عن طريق قياس أنشطة جميع مجمعات أربعة من السلسلة التنفسية في الميتوكوندريا المعزولة. يتم تقييم قدرة الفسفرة المؤكسدة عن طريق قياس القدرة غشاء الميتوكوندريا، ATP معدل الإنتاج، ونشاط F 0 F 1-أتباز. ويتم تقييم الحالة من الطاقة RPTC من خلال تحديد المحتوى ATP داخل الخلايا. وتصور مورفولوجيا الميتوكوندريا في الخلايا الحية باستخدام الأحمر MitoTracker 580، صبغة الفلورسنت التي تتراكم على وجه التحديد في الميتوكوندريا، وmonolayers حية يتم فحصها تحت المجهر الفلورسنت. ويتم تقييم جدوى استخدام RPTC annexin V / propidium تلطيخ يوديد تليها التدفق الخلوي لتحديد الخلايا وورام. تسمح هذه الطرق لتفعيل انتقائي / تثبيط نظائر الانزيمات PKC الفرديةلتقييم دورها في الوظائف الخلوية في مجموعة متنوعة من الظروف الفسيولوجية والمرضية التي يمكن أن تكون مستنسخة في في المختبر.

الشكل 1 يبين أن تسليم الغدانية من [كدنا] ترميز بالموقع جوهري (caPKC-ε) وغير نشطة (dnPKC-ε) من المسوخ PKC-ε النتائج في مستويات البروتين زيادة كبيرة في ε-PKC في RPTC والميتوكوندريا. overexpressed الخلايا المصابة مع [كدنا] تحمل ناقلات caPKC-ε في فسفرته (نشط) شكل ε-PKC بينما الخلايا المصا?...

Watch this Scientific Journal Video about Assessment of Mitochondrial Functions and Cell Viability in Renal Cells Overexpressing Protein Kinase C Isozymes at JoVE.com

Assessment of Mitochondrial Functions and Cell Viability in Renal Cells Overexpressing Protein Kinase C Isozymes

ويرد وصف آثار تفعيل نظائر الانزيمات بروتين كيناز (بي كي سي) C على وظائف الميتوكوندريا المرتبطة التنفس والفسفرة المؤكسدة وعلى بقاء الخلية. النهج يتكيف تقنية الغدانية إلى overexpress انتقائي نظائر الانزيمات PKC في الثقافة الخلية الأولية ومجموعة متنوعة من فحوصات لتحديد وظائف الميتوكوندريا والطاقة حالة من الخلية.

تقييم وظائف الميتوكوندريا وبقاء الخلية في خلايا الكلى البروتين Overexpressing نظائر الانزيمات C كيناز

The protein kinase C (PKC) family of isozymes is involved in numerous physiological and pathological processes. Our recent data demonstrate that PKC ...

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18.1K Views.  University of Arkansas for Medical Sciences. ويرد وصف آثار تفعيل نظائر الانزيمات بروتين كيناز (بي كي سي) C على وظائف الميتوكوندريا المرتبطة التنفس والفسفرة المؤكسدة وعلى بقاء الخلية. النهج يتكيف تقنية الغدانية إلى overexpress انتقائي نظائر الانزيمات PKC في الثقافة الخلية الأولية ومجموعة متنوعة من فحوصات لتحديد ?...

Video: Assessment of Mitochondrial Functions and Cell Viability in Renal Cells Overexpressing Protein Kinase C Isozymes

Counting and Determining the Viability of Cultured Cells

Determining the number of cells in culture is important in standardization of culture conditions and in performing accurate quantitation experiments. A hemacytometer is a thick glass slide with a central area designed as a counting chamber. Cell suspension is applied to a defined area and counted so cell density can be calculated. 

Determining the number of cells in culture is important in standardization of culture conditions and in performing accurate quantitation experiments. In this video, we demonstrate how cells are counted using a hemacytometer.

العد وتحديد صلاحية خلايا مثقف

Determining the number of cells in culture is important in standardization of culture conditions and in performing accurate quantitation experiments. A ...

Activation of Apoptosis by Cytoplasmic Microinjection of Cytochrome c

Apoptosis, or programmed cell death, is a conserved and highly regulated pathway by which cells die1. Apoptosis can be triggered when cells encounter a wide range of cytotoxic stresses. These insults initiate signaling cascades that ultimately cause the release of cytochrome c from the mitochondrial intermembrane space to the cytoplasm2. The release of cytochrome c from mitochondria is a key event that triggers the rapid activation of caspases, the key cellular proteases which ultimately execute cell death3-4.
The pathway of apoptosis is regulated at points upstream and downstream of cytochrome c release from mitochondria5. In order to study the post-mitochondrial regulation of caspase activation, many investigators have turned to direct cytoplasmic microinjection of holocytochrome c (heme-attached) protein into cells6-9. Cytochrome c is normally localized to the mitochondria where attachment of a heme group is necessary to enable it to activate apoptosis10-11. Therefore, to directly activate caspases, it is necessary to inject the holocytochrome c protein instead of its cDNA, because while the expression of cytochrome c from cDNA constructs will result in mitochondrial targeting and heme attachment, it will be sequestered from cytosolic caspases. Thus, the direct cytosolic microinjection of purified heme-attached cytochrome c protein is a useful tool to mimic mitochondrial cytochrome c release and apoptosis without the use of toxic insults which cause cellular and mitochondrial damage.
In this article, we describe a method for the microinjection of cytochrome c protein into cells, using mouse embryonic fibroblasts (MEFs) and primary sympathetic neurons as examples. While this protocol focuses on the injection of cytochrome c for investigations of apoptosis, the techniques shown here can also be easily adapted for microinjection of other proteins of interest.

Activation of Apoptosis by Cytoplasmic Microinjection of Cytochrome c

In this protocol, we describe the direct cytoplasmic microinjection of cytochrome c protein into fibroblasts and primary sympathetic neurons. This technique allows for the introduction of cytochrome c protein into the cytoplasm of cells and mimics the release of cytochrome c from mitochondria, which occurs during apoptosis.

تفعيل موت الخلايا المبرمج من قبل Microinjection هيولي من السيتوكروم ج</em

Apoptosis, or programmed cell death, is a conserved and highly regulated pathway by which cells die1.  Apoptosis can be triggered when cells encounter a ...

Assessment of GFP Expression and Viability Using the Tali Image-Based Cytometer

Single-cell and population information are commonly obtained either by flow cytometry or fluorescence microscopy. However, these two methods provide different information. Flow cytometry gives quantitative multi-parametric information about physical characteristics and staining or expression, but doesn't allow for visualization. Stand-alone fluorescence microscopy provides visual data, but doesn't allow for straightforward quantitative measurements1.
Image-based cytometry bridges the gap between these two methods, enabling the quick visualization and simultaneous quantitative analysis of thousands of cells in heterogeneous populations2. Here, we present a method for performing cell viability and green fluorescent protein (GFP) expression assays using the Tali Image-Based Cytometer3. The Tali instrument is a 3-channel (bright field, green fluorescence, red fluorescence) benchtop assay platform that offers several advantages over flow cytometry and fluorescence microscopy. The Tali cytometer is less expensive, takes up less bench space, requires less maintenance, and the work flow has been simplified so that the operation and analysis is much simpler and quicker. The Tali cytometer is capable of performing a range of suspension cell-based assays, including GFP and red fluorescent protein (RFP) expression, apoptosis4-6 and cell viability analysis with propidium iodide (PI)7-11.
Here, we demonstrate the use of the Tali instrument in performing a cell viability assay in cells expressing GFP. GFP-transduced cells are stained using the Tali Viability Kit - Dead Cell Red. The cells are then pipetted into a Tali Cellular Analysis Slide and loaded into the cytometer. Bright field, red fluorescence and green fluorescence images are captured and analyzed using assay specific algorithms. Histograms are then generated to display cell size, PI fluorescence intensity, and GFP fluorescence intensity. These parameters can then be thresholded to home in on a specific cell population.
A side-by side comparison of the Tali Image-Based Cytometer and traditional flow cytometry demonstrates that the two methods provide comparable data regarding cell viability and protein expression. However, the Tali instrument provides additional visual information about the cell population that cannot be obtained using a flow cytometer.

This protocol describes how to perform cell viability and fluorescence expression assays using the Tali Image-Based Cytometer.

تقييم التعبير GFP واستمرار استخدام يستند إلى صورة طالي عداد الكريات

Single-cell and population information are commonly obtained either by flow cytometry or fluorescence microscopy. However, these two methods provide ...

4D Imaging of Protein Aggregation in Live Cells

One of the key tasks of any living cell is maintaining the proper folding of newly synthesized proteins in the face of ever-changing environmental conditions and an intracellular environment that is tightly packed, sticky, and hazardous to protein stability1. The ability to dynamically balance protein production, folding and degradation demands highly-specialized quality control machinery, whose absolute necessity is observed best when it malfunctions. Diseases such as ALS, Alzheimer's, Parkinson's, and certain forms of Cystic Fibrosis have a direct link to protein folding quality control components2, and therefore future therapeutic development requires a basic understanding of underlying processes. Our experimental challenge is to understand how cells integrate damage signals and mount responses that are tailored to diverse circumstances.
The primary reason why protein misfolding represents an existential threat to the cell is the propensity of incorrectly folded proteins to aggregate, thus causing a global perturbation of the crowded and delicate intracellular folding environment1. The folding health, or "proteostasis," of the cellular proteome is maintained, even under the duress of aging, stress and oxidative damage, by the coordinated action of different mechanistic units in an elaborate quality control system3,4. A specialized machinery of molecular chaperones can bind non-native polypeptides and promote their folding into the native state1, target them for degradation by the ubiquitin-proteasome system5, or direct them to protective aggregation inclusions6-9.
In eukaryotes, the cytosolic aggregation quality control load is partitioned between two compartments8-10: the juxtanuclear quality control compartment (JUNQ) and the insoluble protein deposit (IPOD) (Figure 1 - model). Proteins that are ubiquitinated by the protein folding quality control machinery are delivered to the JUNQ, where they are processed for degradation by the proteasome. Misfolded proteins that are not ubiquitinated are diverted to the IPOD, where they are actively aggregated in a protective compartment.
Up until this point, the methodological paradigm of live-cell fluorescence microscopy has largely been to label proteins and track their locations in the cell at specific time-points and usually in two dimensions. As new technologies have begun to grant experimenters unprecedented access to the submicron scale in living cells, the dynamic architecture of the cytosol has come into view as a challenging new frontier for experimental characterization. We present a method for rapidly monitoring the 3D spatial distributions of multiple fluorescently labeled proteins in the yeast cytosol over time. 3D timelapse (4D imaging) is not merely a technical challenge; rather, it also facilitates a dramatic shift in the conceptual framework used to analyze cellular structure.
We utilize a cytosolic folding sensor protein in live yeast to visualize distinct fates for misfolded proteins in cellular aggregation quality control, using rapid 4D fluorescent imaging. The temperature sensitive mutant of the Ubc9 protein10-12 (Ubc9ts) is extremely effective both as a sensor of cellular proteostasis, and a physiological model for tracking aggregation quality control. As with most ts proteins, Ubc9ts is fully folded and functional at permissive temperatures due to active cellular chaperones. Above 30 &deg;C, or when the cell faces misfolding stress, Ubc9ts misfolds and follows the fate of a native globular protein that has been misfolded due to mutation, heat denaturation, or oxidative damage. By fusing it to GFP or other fluorophores, it can be tracked in 3D as it forms Stress Foci, or is directed to JUNQ or IPOD.

Cellular viability depends on timely and efficient management of protein misfolding. Here we describe a method for visualizing the different potential fates of a misfolded protein: refolding, degradation, or sequestration in inclusions. We demonstrate the use of a folding sensor, Ubc9ts, for monitoring proteostasis and aggregation quality control in live cells using 4D microscopy.

4D التصوير التجميع البروتين في الخلايا الحية

One of the key tasks of any living cell is maintaining the proper folding of newly synthesized proteins in the face of ever-changing environmental ...

Viability Assays for Cells in Culture

Manual cell counts on a microscope are a sensitive means of assessing cellular viability but are time-consuming and therefore expensive. Computerized viability assays are expensive in terms of equipment but can be faster and more objective than manual cell counts. The present report describes the use of three such viability assays. Two of these assays are infrared and one is luminescent. Both infrared assays rely on a 16&#160;bit Odyssey Imager. One infrared assay uses the DRAQ5 stain for nuclei combined with the Sapphire stain for cytosol and is visualized in the 700 nm channel. The other infrared assay, an In-Cell Western, uses antibodies against cytoskeletal proteins (&#945;-tubulin or microtubule associated protein 2) and labels them in the 800 nm channel. The third viability assay is a commonly used luminescent assay for ATP, but we use a quarter of the recommended volume to save on cost. These measurements are all linear and correlate with the number of cells plated, but vary in sensitivity. All three assays circumvent time-consuming microscopy and sample the entire well, thereby reducing sampling error. Finally, all of the assays can easily be completed within one day of the end of the experiment, allowing greater numbers of experiments to be performed within short timeframes. However, they all rely on the assumption that cell numbers remain in proportion to signal strength after treatments, an assumption that is sometimes not met, especially for cellular ATP. Furthermore, if cells increase or decrease in size after treatment, this might affect signal strength without affecting cell number. We conclude that all viability assays, including manual counts, suffer from a number of caveats, but that computerized viability assays are well worth the initial investment. Using all three assays together yields a comprehensive view of cellular structure and function.

Therapeutic compounds are often first examined in vitro with viability assays. Blind cell counts by a human observer can be highly sensitive to small changes in cell number but do not assess function. Computerized viability assays, as described here, can assess both structure and function in an objective manner.

فحوصات قابلية للخلايا في الثقافة

Manual cell counts on a microscope are a sensitive means of assessing cellular viability but are time-consuming and therefore expensive. Computerized ...

Experimental Approaches to Study Mitochondrial Localization and Function of a Nuclear Cell Cycle Kinase, Cdk1

Although mitochondria possess their own transcriptional machinery, merely 1% of mitochondrial proteins are synthesized inside the organelle. The nuclear-encoded proteins are transported into mitochondria guided by their mitochondria targeting sequences (MTS); however, a majority of mitochondrial localized proteins lack an identifiable MTS. Nevertheless, the fact that MTS can instruct proteins to go into the mitochondria provides a valuable tool for studying mitochondrial functions of normally nuclear and/or cytoplasmic proteins. We have recently identified the cell cycle kinase CyclinB1/Cdk1 complex in the mitochondria. To specifically study the mitochondrial functions of this complex, mitochondrial overexpression and knock-down of this complex without interfering with its nuclear or cytoplasmic functions were essential. By tagging CyclinB1/Cdk1 with MTS, we were able to achieve mitochondrial overexpression of this complex to study its mitochondrial targets as well as functions. Via tagging dominant-negative Cdk1 with MTS, inhibition of Cdk1 activity was accomplished particularly in the mitochondria. Potential mitochondrial targets of CyclinB1/Cdk1 complex were identified using a gel-based proteomics approach. Unlike traditional 2D gel analysis, we employed 2-dimensional difference gel electrophoresis (2D-DIGE) technology followed by phosphoprotein staining to fluorescently label differentially phosphorylated proteins in mitochondrial Cdk1 expressing cells. Identification of phosphoprotein spots that were altered in wild type versus dominant negative Cdk1 bearing mitochondria revealed the identity of mitochondrial targets of Cdk1. Finally, to determine the effect of CyclinB1/Cdk1 mitochondrial localization in cell cycle progression, a cell proliferation assay using a synthetic thymidine analogue EdU (5-ethynyl-2&#8242;-deoxyuridine) was used to monitor the cells as they go through the cell cycle and replicate their DNA. Altogether, we demonstrated a variety of approaches available to study mitochondrial localization and activity of a cell cycle kinase. These are advanced, yet easy to follow methods that will be beneficial to many cell biology researchers.

Here, we outline how to study mitochondrial localization of a (cell cycle) kinase, and how to determine its sub-mitochondrial location as well as potential mitochondrial substrates/targets. Forced expression of proteins into the mitochondria provides a useful tool for studying the functional consequences of mitochondrial localization of a protein of interest.

المناهج التجريبية لدراسة الميتوكوندريا التعريب وظيفة من دورة الخلية النووية كيناز، Cdk1

Although mitochondria possess their own transcriptional machinery, merely 1% of mitochondrial proteins are synthesized inside the organelle. The ...

Simultaneous Measurement of Mitochondrial Calcium and Mitochondrial Membrane Potential in Live Cells by Fluorescent Microscopy

Apart from their essential role in generating ATP, mitochondria also act as local calcium (Ca2+) buffers to tightly regulate intracellular Ca2+ concentration. To do this, mitochondria utilize the electrochemical potential across their inner membrane (&#916;&#936;m) to sequester Ca2+. The influx of Ca2+ into the mitochondria stimulates three rate-limiting dehydrogenases of the citric acid cycle, increasing electron transfer through the oxidative phosphorylation (OXPHOS) complexes. This stimulation maintains &#916;&#936;m, which is temporarily dissipated as the positive calcium ions cross the mitochondrial inner membrane into the mitochondrial matrix.
We describe here a method for simultaneously measuring mitochondria Ca2+ uptake and &#916;&#936;m in live cells using confocal microscopy. By permeabilizing the cells, mitochondrial Ca2+ can be measured using the fluorescent Ca2+ indicator Fluo-4, AM, with measurement of &#916;&#936;m using the fluorescent dye tetramethylrhodamine, methyl ester, perchlorate (TMRM). The benefit of this system is that there is very little spectral overlap between the fluorescent dyes, allowing accurate measurement of mitochondrial Ca2+ and &#916;&#936;m simultaneously. Using the sequential addition of Ca2+ aliquots, mitochondrial Ca2+ uptake can be monitored, and the concentration at which Ca2+ induces mitochondrial membrane permeability transition and the loss of &#916;&#936;m determined.

Mitochondria can utilize the electrochemical potential across their inner membrane (&#916;&#936;m) to sequester calcium (Ca2+), allowing them to shape cytosolic Ca2+ signaling within the cell. We describe a method for simultaneously measuring mitochondria Ca2+ uptake and &#916;&#936;m in live cells using fluorescent dyes and confocal microscopy.

قياس وقت واحد من الميتوكوندريا الكالسيوم والميتوكوندريا غشاء المحتملة في الخلايا الحية التي كتبها نيون الميكروسكوب

Apart from their essential role in generating ATP, mitochondria also act as local calcium (Ca2+) buffers to tightly regulate intracellular Ca2+ ...

A Graphical User Interface for Software-assisted Tracking of Protein Concentration in Dynamic Cellular Protrusions

Filopodia are dynamic, finger-like cellular protrusions associated with migration and cell-cell communication. In order to better understand the complex signaling mechanisms underlying filopodial initiation, elongation and subsequent stabilization or retraction, it is crucial to determine the spatio-temporal protein activity in these dynamic structures. To analyze protein function in filopodia, we recently developed a semi-automated tracking algorithm that adapts to filopodial shape-changes, thus allowing parallel analysis of protrusion dynamics and relative protein concentration along the whole filopodial length. Here, we present a detailed step-by-step protocol for optimized cell handling, image acquisition and software analysis. We further provide instructions for the use of optional features during image analysis and data representation, as well as troubleshooting guidelines for all critical steps along the way. Finally, we also include a comparison of the described image analysis software with other programs available for filopodia quantification. Together, the presented protocol provides a framework for accurate analysis of protein dynamics in filopodial protrusions using image analysis software.

We present a software solution for semi-automated tracking of relative protein concentration along the length of dynamic cellular protrusions.

واجهة المستخدم الرسومية لتتبع بمساعدة برنامج تركيز البروتين في النتوءات الخلوية الديناميكية

Filopodia are dynamic, finger-like cellular protrusions associated with migration and cell-cell communication. In order to better understand the complex ...

Primary Culture of Rat Adrenocortical Cells and Assays of Steroidogenic Functions

The hormone which the adrenal cortex secretes is vital for animals against stress and diseases. The method described here is the procedure of primary cultured rat adrenal cells and related functional assays (immunofluorescence staining of lipid droplet surface protein, as well as corticosterone analysis). Unlike an in vivo model, the variation of interexperiments in adrenal monolayer cultures is less and the experimental condition is easy to control. Besides, the source of rats is also more stable than other animals, like bovine ones. There are also several human adrenal cell lines (NCI-H295, NCI-H295R, SW13, etc.) that can be used in adrenal studies. However, the steroid production of these lines will still be influenced by numerous factors, which include serum lot number, passage number, mutant/loss of distinct genes, etc. Except for lacking 17&#945;-hydroxylase, the primary culture of rat adrenocortical cells is a better and more convenient technique for studying adrenal physiology. In summary, primary rat adrenal cultures could be a good in vitro platform for researchers to investigate the mechanisms of the reagent of interest in the adrenal gland system.

The hormone secreted by the adrenal cortex is vital for animals against stress and diseases. Here, we present a protocol to culture the primary rat adrenal cells. It could be a good in vitro platform for investigating the mechanisms of the reagent of interest in adrenal steroidogenesis and lipid biosynthesis.

الثقافة الأولية من خلايا الفئران البطاني وفحوصات لوظائف ستيرويدوجينيك

The hormone which the adrenal cortex secretes is vital for animals against stress and diseases. The method described here is the procedure of primary ...

Photostimulation by Femtosecond Laser Activates Extracellular-signal-regulated Kinase (ERK) Signaling or Mitochondrial Events in Target Cells

Direct control of cellular defined molecular events is important to life science. Recently, studies have demonstrated that femtosecond laser stimulation can simultaneously activate multiple cellular molecular signaling pathways. In this protocol, we show that through coupling femtosecond laser into a confocal microscope, cells can be stimulated precisely by the tightly-focused laser. Some molecular processes that can be simultaneously observed are subsequently activated. We present detailed protocols of the photostimulation to activate extracellular signal regulated kinase (ERK) signaling pathway in Hela cells. Mitochondrial flashes of reactive oxygen species (ROS) and other mitochondrial events can be also stimulated if focusing the femtosecond laser pulse on a certain mitochondrial tubular structure. This protocol includes pretreating cells before photostimulation, delivering the photostimulation by a femtosecond laser flash onto the target, and observing/identifying molecular changes afterwards. This protocol represents an all-optical tool for related biological researches.

Photostimulation by Femtosecond Laser Activates Extracellular-signal-regulated Kinase ERK Signaling or Mitochondrial Events in Target Cells

Tightly-focused femtosecond laser can deliver precise stimulation to cells by being coupled into a confocal microscopy enabling the real-time observation and photostimulation. The photostimulation can activate cell molecular events including ERK signaling pathway and mitochondrial flashes of reactive oxygen species.

تحفيز الصور بواسطة ليزر Femtosecond ينشط إشارات الكيناز (ERK) أو أحداث الميتوكوندريا في الخلايا المستهدفة

Direct control of cellular defined molecular events is important to life science. Recently, studies have demonstrated that femtosecond laser stimulation ...