Department of Structural and Computational Biology
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Exploring icosahedral virus structures with VIPER.
Nature reviews. Microbiology Oct, 2005 | Pubmed ID: 16205712
The structure of an infectious P22 virion shows the signal for headful DNA packaging.
Science (New York, N.Y.) Jun, 2006 | Pubmed ID: 16709746
Automated cryoEM data acquisition and analysis of 284742 particles of GroEL.
Journal of structural biology Sep, 2006 | Pubmed ID: 16762565
Polyvalent display of heme on hepatitis B virus capsid protein through coordination to hexahistidine tags.
Chemistry & biology May, 2008 | Pubmed ID: 18482703
A test-bed for optimizing high-resolution single particle reconstructions.
Journal of structural biology Jul, 2008 | Pubmed ID: 18534866
Assembly architecture and DNA binding of the bacteriophage P22 terminase small subunit.
Journal of molecular biology Nov, 2008 | Pubmed ID: 18775728
Bacteriophage lambda stabilization by auxiliary protein gpD: timing, location, and mechanism of attachment determined by cryo-EM.
Structure (London, England : 1993) Sep, 2008 | Pubmed ID: 18786402
Appion: an integrated, database-driven pipeline to facilitate EM image processing.
Journal of structural biology Apr, 2009 | Pubmed ID: 19263523
Ab initio maximum likelihood reconstruction from cryo electron microscopy images of an infectious virion of the tailed bacteriophage P22 and maximum likelihood versions of Fourier Shell Correlation appropriate for measuring resolution of spherical or cylindrical objects.
Journal of structural biology Sep, 2009 | Pubmed ID: 19457456
Drosophila A virus is an unusual RNA virus with a T=3 icosahedral core and permuted RNA-dependent RNA polymerase.
The Journal of general virology Sep, 2009 | Pubmed ID: 19474243
The P22 tail machine at subnanometer resolution reveals the architecture of an infection conduit.
Structure (London, England : 1993) Jun, 2009 | Pubmed ID: 19523897
A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy.
Journal of structural biology Mar, 2010 | Pubmed ID: 20018246
An automated procedure for detecting protein folds from sub-nanometer resolution electron density.
Journal of structural biology Jun, 2010 | Pubmed ID: 20026407
Subunits fold at position-dependent rates during maturation of a eukaryotic RNA virus.
Proceedings of the National Academy of Sciences of the United States of America Aug, 2010 | Pubmed ID: 20660783
Peering down the barrel of a bacteriophage portal: the genome packaging and release valve in p22.
Structure (London, England : 1993) Apr, 2011 | Pubmed ID: 21439834
Capsomer dynamics and stabilization in the T = 12 marine bacteriophage SIO-2 and its procapsid studied by CryoEM.
Structure (London, England : 1993) Mar, 2012 | Pubmed ID: 22405008
DNA bending-induced phase transition of encapsidated genome in phage λ.
Nucleic acids research Apr, 2013 | Pubmed ID: 23449219
Solid-to-fluid-like DNA transition in viruses facilitates infection.
Proceedings of the National Academy of Sciences of the United States of America Oct, 2014 | Pubmed ID: 25271319
The Pex1/Pex6 complex is a heterohexameric AAA+ motor with alternating and highly coordinated subunits.
Journal of molecular biology Mar, 2015 | Pubmed ID: 25659908
Structural organization of the dynein-dynactin complex bound to microtubules.
Nature structural & molecular biology Apr, 2015 | Pubmed ID: 25751425
Multivalent Microtubule Recognition by Tubulin Tyrosine Ligase-like Family Glutamylases.
Cell May, 2015 | Pubmed ID: 25959773
Architecture of the Complex Formed by Large and Small Terminase Subunits from Bacteriophage P22.
Journal of molecular biology Oct, 2015 | Pubmed ID: 26301600
Ubp6 deubiquitinase controls conformational dynamics and substrate degradation of the 26S proteasome.
Nature structural & molecular biology Sep, 2015 | Pubmed ID: 26301997
Site-specific labeling of proteins for electron microscopy.
Journal of structural biology Nov, 2015 | Pubmed ID: 26409249
Thermodynamic Interrogation of the Assembly of a Viral Genome Packaging Motor Complex.
Biophysical journal Oct, 2015 | Pubmed ID: 26488657
Atomic structure of the 26S proteasome lid reveals the mechanism of deubiquitinase inhibition.
eLife Jan, 2016 | Pubmed ID: 26744777
Cryo-electron microscopy structure of the TRPV2 ion channel.
Nature structural & molecular biology Feb, 2016 | Pubmed ID: 26779611
A novel cereblon modulator recruits GSPT1 to the CRL4(CRBN) ubiquitin ligase.
Nature 07, 2016 | Pubmed ID: 27338790
Isolation of yeast complex IV in native lipid nanodiscs.
Biochimica et biophysica acta Dec, 2016 | Pubmed ID: 27620332
What's the Key to Unlocking the Proteasome's Gate?
Structure (London, England : 1993) Dec, 2016 | Pubmed ID: 27926830
Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex.
Cell Mar, 2017 | Pubmed ID: 28340349
Cas1 and the Csy complex are opposing regulators of Cas2/3 nuclease activity.
Proceedings of the National Academy of Sciences of the United States of America Jun, 2017 | Pubmed ID: 28438998
The endoplasmic reticulum HSP40 co-chaperone ERdj3/DNAJB11 assembles and functions as a tetramer.
The EMBO journal Aug, 2017 | Pubmed ID: 28655754
Achieving better-than-3-Å resolution by single-particle cryo-EM at 200 keV.
Nature methods Nov, 2017 | Pubmed ID: 28991891
Cryo-electron microscopy structure of the lysosomal calcium-permeable channel TRPML3.
Nature Oct, 2017 | Pubmed ID: 29019979
Structure of the mitochondrial inner membrane AAA+ protease YME1 gives insight into substrate processing.
Science (New York, N.Y.) Nov, 2017 | Pubmed ID: 29097521
Structure of the cold- and menthol-sensing ion channel TRPM8.
Science (New York, N.Y.) Jan, 2018 | Pubmed ID: 29217583
The peroxisomal AAA-ATPase Pex1/Pex6 unfolds substrates by processive threading.
Nature communications Jan, 2018 | Pubmed ID: 29321502
Cryo-electron tomography reveals that dynactin recruits a team of dyneins for processive motility.
Nature structural & molecular biology Mar, 2018 | Pubmed ID: 29416113
Author Correction: Cryo-electron tomography reveals that dynactin recruits a team of dyneins for processive motility.
Nature structural & molecular biology Apr, 2018 | Pubmed ID: 29476122
Exploring applications of crowdsourcing to cryo-EM.
Journal of structural biology Jul, 2018 | Pubmed ID: 29486249
Cryo-EM structure of a mitochondrial calcium uniporter.
Science (New York, N.Y.) Aug, 2018 | Pubmed ID: 29954988
Insights into autophagosome biogenesis from structural and biochemical analyses of the ATG2A-WIPI4 complex.
Proceedings of the National Academy of Sciences of the United States of America Oct, 2018 | Pubmed ID: 30185561
Substrate-engaged 26 proteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation.
Science (New York, N.Y.) Nov, 2018 | Pubmed ID: 30309908
Conformational ensemble of the human TRPV3 ion channel.
Nature communications Nov, 2018 | Pubmed ID: 30429472
A Multi-model Approach to Assessing Local and Global Cryo-EM Map Quality.
Structure (London, England : 1993) Feb, 2019 | Pubmed ID: 30449687
The rod-shaped ATG2A-WIPI4 complex tethers membranes in vitro.
Contact (Thousand Oaks (Ventura County, Calif.)) , 2018 | Pubmed ID: 30766969
High-resolution structure determination of sub-100 kDa complexes using conventional cryo-EM.
Nature communications Mar, 2019 | Pubmed ID: 30833564
Structure Reveals a Mechanism of CRISPR-RNA-Guided Nuclease Recruitment and Anti-CRISPR Viral Mimicry.
Molecular cell Apr, 2019 | Pubmed ID: 30872121
Setting the dynein motor in motion: New insights from electron tomography.
The Journal of biological chemistry Sep, 2019 | Pubmed ID: 31285262
An allosteric network in spastin couples multiple activities required for microtubule severing.
Nature structural & molecular biology Aug, 2019 | Pubmed ID: 31285604
Unique Structural Features of the Mitochondrial AAA+ Protease AFG3L2 Reveal the Molecular Basis for Activity in Health and Disease.
Molecular cell Sep, 2019 | Pubmed ID: 31327635
Visualizing structural transitions of ligand-dependent gating of the TRPM2 channel.
Nature communications Aug, 2019 | Pubmed ID: 31431622
Current outcomes when optimizing 'standard' sample preparation for single-particle cryo-EM.
Journal of microscopy Oct, 2019 | Pubmed ID: 31553060
The molecular principles governing the activity and functional diversity of AAA+ proteins.
Nature reviews. Molecular cell biology Jan, 2020 | Pubmed ID: 31754261
Specific lid-base contacts in the 26s proteasome control the conformational switching required for substrate degradation.
eLife Nov, 2019 | Pubmed ID: 31778111
Dynamics at the serine loop underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing.
eLife Feb, 2020 | Pubmed ID: 32101164
Author Correction: An allosteric network in spastin couples multiple activities required for microtubule severing.
Nature structural & molecular biology Apr, 2020 | Pubmed ID: 32203494
AcrIF9 tethers non-sequence specific dsDNA to the CRISPR RNA-guided surveillance complex.
Nature communications Jun, 2020 | Pubmed ID: 32483187
Structural basis for distinct operational modes and protease activation in AAA+ protease Lon.
Science advances May, 2020 | Pubmed ID: 32490208
How low can we go? Structure determination of small biological complexes using single-particle cryo-EM.
Current opinion in structural biology Oct, 2020 | Pubmed ID: 32599507
Sub-2 Angstrom resolution structure determination using single-particle cryo-EM at 200 keV.
Journal of structural biology: X , 2020 | Pubmed ID: 32647824
Present and Emerging Methodologies in Cryo-EM Single-Particle Analysis.
Biophysical journal Oct, 2020 | Pubmed ID: 32919493
A guided approach for subtomogram averaging of challenging macromolecular assemblies.
Journal of structural biology: X , 2020 | Pubmed ID: 33319208
Structures of the human LONP1 protease reveal regulatory steps involved in protease activation.
Nature communications May, 2021 | Pubmed ID: 34050165
Structural basis for piRNA targeting.
Nature Sep, 2021 | Pubmed ID: 34471284
Conquer by cryo-EM without physically dividing.
Biochemical Society transactions Nov, 2021 | Pubmed ID: 34709401
A case for glycerol as an acceptable additive for single-particle cryoEM samples.
Acta crystallographica. Section D, Structural biology Jan, 2022 | Pubmed ID: 34981768
Cryo-EM structure of hexameric yeast Lon protease (PIM1) highlights the importance of conserved structural elements.
The Journal of biological chemistry Mar, 2022 | Pubmed ID: 35143841
Allosteric differences dictate GroEL complementation of E. coli.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology Mar, 2022 | Pubmed ID: 35199390
The YΦ motif defines the structure-activity relationships of human 20S proteasome activators.
Nature communications Mar, 2022 | Pubmed ID: 35264557
Coupling of distant ATPase domains in the circadian clock protein KaiC.
Nature structural & molecular biology Aug, 2022 | Pubmed ID: 35864165
Structural basis for shape-selective recognition and aminoacylation of a D-armless human mitochondrial tRNA.
Nature communications Aug, 2022 | Pubmed ID: 36042193
Structure of the hepatitis C virus E1E2 glycoprotein complex.
Science (New York, N.Y.) Oct, 2022 | Pubmed ID: 36264808
Molecular glue CELMoD compounds are regulators of cereblon conformation.
Science (New York, N.Y.) Nov, 2022 | Pubmed ID: 36378961
Succinylation of a KEAP1 sensor lysine promotes NRF2 activation.
bioRxiv : the preprint server for biology May, 2023 | Pubmed ID: 37215033
DELE1 oligomerization promotes integrated stress response activation.
Nature structural & molecular biology Aug, 2023 | Pubmed ID: 37550454
Structural basis for a degenerate tRNA identity code and the evolution of bimodal specificity in human mitochondrial tRNA recognition.
Nature communications Aug, 2023 | Pubmed ID: 37558671
Succinylation of a KEAP1 sensor lysine promotes NRF2 activation.
Cell chemical biology Aug, 2023 | Pubmed ID: 37619563
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