Signaling Proteomics
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Interactions between co-expressed Arabidopsis sucrose transporters in the split-ubiquitin system.
BMC biochemistry Mar, 2003 | Pubmed ID: 12689351
Plant science. Hexokinase, Jack-of-all-trades.
Science (New York, N.Y.) Apr, 2003 | Pubmed ID: 12690178
A novel proteomic screen for peptide-protein interactions.
The Journal of biological chemistry Mar, 2004 | Pubmed ID: 14679214
A proteomic fingerprint of dissolved organic carbon and of soil particles.
Oecologia Jan, 2005 | Pubmed ID: 15449171
Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry.
Molecular & cellular proteomics : MCP Nov, 2005 | Pubmed ID: 16088002
Phosphotyrosine interactome of the ErbB-receptor kinase family.
Molecular systems biology , 2005 | Pubmed ID: 16729043
Metabolic labeling of plant cell cultures with K(15)NO3 as a tool for quantitative analysis of proteins and metabolites.
Plant methods , 2006 | Pubmed ID: 16948866
Quantitation of multisite EGF receptor phosphorylation using mass spectrometry and a novel normalization approach.
Journal of proteome research Jul, 2007 | Pubmed ID: 17523611
Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.
Molecular & cellular proteomics : MCP Oct, 2007 | Pubmed ID: 17586839
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor.
Nucleic acids research Jan, 2008 | Pubmed ID: 17984086
Rpl33, a nonessential plastid-encoded ribosomal protein in tobacco, is required under cold stress conditions.
The Plant cell Aug, 2008 | Pubmed ID: 18757552
Definition of Arabidopsis sterol-rich membrane microdomains by differential treatment with methyl-beta-cyclodextrin and quantitative proteomics.
Molecular & cellular proteomics : MCP Apr, 2009 | Pubmed ID: 19036721
Ratio-dependent significance thresholds in reciprocal 15N-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment.
Proteomics Apr, 2009 | Pubmed ID: 19260003
The pollen organelle membrane proteome reveals highly spatial-temporal dynamics during germination and tube growth of lily pollen.
Journal of proteome research Nov, 2009 | Pubmed ID: 19799449
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update.
Nucleic acids research Jan, 2010 | Pubmed ID: 19880383
Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis.
Molecular systems biology , 2009 | Pubmed ID: 19888209
Feedback inhibition of ammonium uptake by a phospho-dependent allosteric mechanism in Arabidopsis.
The Plant cell Nov, 2009 | Pubmed ID: 19948793
Proteomics approaches to understand protein phosphorylation in pathway modulation.
Current opinion in plant biology Jun, 2010 | Pubmed ID: 20097120
Quantitation in mass-spectrometry-based proteomics.
Annual review of plant biology , 2010 | Pubmed ID: 20192741
Identification of protein stability determinants in chloroplasts.
The Plant journal : for cell and molecular biology Aug, 2010 | Pubmed ID: 20545891
Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana.
BMC genomics , 2010 | Pubmed ID: 20594336
PAMP (pathogen-associated molecular pattern)-induced changes in plasma membrane compartmentalization reveal novel components of plant immunity.
The Journal of biological chemistry Dec, 2010 | Pubmed ID: 20843791
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.
Plant physiology Jan, 2011 | Pubmed ID: 21075962
Identification of lily pollen 14-3-3 isoforms and their subcellular and time-dependent expression profile.
Biological chemistry Mar, 2011 | Pubmed ID: 21291338
The potato sucrose transporter StSUT1 interacts with a DRM-associated protein disulfide isomerase.
Molecular plant Jan, 2012 | Pubmed ID: 21746698
Cold acclimation induces changes in Arabidopsis tonoplast protein abundance and activity and alters phosphorylation of tonoplast monosaccharide transporters.
The Plant journal : for cell and molecular biology Feb, 2012 | Pubmed ID: 21988472
The composition of plant mitochondrial supercomplexes changes with oxygen availability.
The Journal of biological chemistry Dec, 2011 | Pubmed ID: 22009743
Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.
The Plant journal : for cell and molecular biology Mar, 2012 | Pubmed ID: 22060019
Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves.
The Plant journal : for cell and molecular biology Apr, 2012 | Pubmed ID: 22098298
The use of heavy nitrogen in quantitative proteomics experiments in plants.
Trends in plant science Feb, 2012 | Pubmed ID: 22154826
Cell type-specific protein and transcription profiles implicate periarbuscular membrane synthesis as an important carbon sink in the mycorrhizal symbiosis.
Plant signaling & behavior Apr, 2012 | Pubmed ID: 22499167
Precision, proteome coverage, and dynamic range of Arabidopsis proteome profiling using (15)N metabolic labeling and label-free approaches.
Molecular & cellular proteomics : MCP Sep, 2012 | Pubmed ID: 22562867
Proteome dynamics and early salt stress response of the photosynthetic organism Chlamydomonas reinhardtii.
BMC genomics , 2012 | Pubmed ID: 22651860
Current status of the plant phosphorylation site database PhosPhAt and its use as a resource for molecular plant physiology.
Frontiers in plant science , 2012 | Pubmed ID: 22723801
Dynamics of salivary proteins and metabolites during extreme endurance sports - a case study.
Proteomics Jul, 2012 | Pubmed ID: 22807457
The protein composition of the digestive fluid from the venus flytrap sheds light on prey digestion mechanisms.
Molecular & cellular proteomics : MCP Nov, 2012 | Pubmed ID: 22891002
Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana.
Frontiers in plant science , 2012 | Pubmed ID: 22973286
Proteomics wants cRacker: automated standardized data analysis of LC-MS derived proteomic data.
Journal of proteome research Nov, 2012 | Pubmed ID: 22978295
PhosPhAt goes kinases--searchable protein kinase target information in the plant phosphorylation site database PhosPhAt.
Nucleic acids research Jan, 2013 | Pubmed ID: 23172287
Function of calcium-dependent protein kinase CPK28 of Arabidopsis thaliana in plant stem elongation and vascular development.
The Plant journal : for cell and molecular biology Mar, 2013 | Pubmed ID: 23252373
Arabidopsis nanodomain-delimited ABA signaling pathway regulates the anion channel SLAH3.
Proceedings of the National Academy of Sciences of the United States of America May, 2013 | Pubmed ID: 23630285
Calcium-dependent protein kinase/NADPH oxidase activation circuit is required for rapid defense signal propagation.
Proceedings of the National Academy of Sciences of the United States of America May, 2013 | Pubmed ID: 23650383
Sucrose-induced receptor kinase SIRK1 regulates plasma membrane aquaporins in Arabidopsis.
Molecular & cellular proteomics : MCP Jul, 2013 | Pubmed ID: 23820729
Incorrectly annotated keratin derived peptide sequences lead to misleading MS/MS data interpretation.
Journal of proteomics Jul, 2013 | Pubmed ID: 23895828
Unraveling sterol-dependent membrane phenotypes by analysis of protein abundance-ratio distributions in different membrane fractions under biochemical and endogenous sterol-depletion.
Molecular & cellular proteomics : MCP Sep, 2013 | Pubmed ID: 24030099
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