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A Bayesian morphometry algorithm.
IEEE transactions on medical imaging Jun, 2004 | Pubmed ID: 15191147
Minimum redundancy feature selection from microarray gene expression data.
Journal of bioinformatics and computational biology Apr, 2005 | Pubmed ID: 15852500
Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy.
IEEE transactions on pattern analysis and machine intelligence Aug, 2005 | Pubmed ID: 16119262
Mapping of microbial pathways through constrained mapping of orthologous genes.
Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference , 2004 | Pubmed ID: 16448029
Automatic recognition and annotation of gene expression patterns of fly embryos.
Bioinformatics (Oxford, England) Mar, 2007 | Pubmed ID: 17237064
Phenotype clustering of breast epithelial cells in confocal images based on nuclear protein distribution analysis.
BMC cell biology , 2007 | Pubmed ID: 17634093
Automatic image analysis for gene expression patterns of fly embryos.
BMC cell biology , 2007 | Pubmed ID: 17634097
Straightening Caenorhabditis elegans images.
Bioinformatics (Oxford, England) Jan, 2008 | Pubmed ID: 18025002
Transitive closure and metric inequality of weighted graphs: detecting protein interaction modules using cliques.
International journal of data mining and bioinformatics , 2006 | Pubmed ID: 18399069
Bioimage informatics: a new area of engineering biology.
Bioinformatics (Oxford, England) Sep, 2008 | Pubmed ID: 18603566
VANO: a volume-object image annotation system.
Bioinformatics (Oxford, England) Mar, 2009 | Pubmed ID: 19189978
A 3D digital atlas of C. elegans and its application to single-cell analyses.
Nature methods Sep, 2009 | Pubmed ID: 19684595
Segmentation of center brains and optic lobes in 3D confocal images of adult fruit fly brains.
Methods (San Diego, Calif.) Feb, 2010 | Pubmed ID: 19698789
Imaging informatics for personalised medicine: applications and challenges.
International journal of functional informatics and personalised medicine , 2009 | Pubmed ID: 19862353
Analysis of cell fate from single-cell gene expression profiles in C. elegans.
Cell Oct, 2009 | Pubmed ID: 19879847
A principal skeleton algorithm for standardizing confocal images of fruit fly nervous systems.
Bioinformatics (Oxford, England) Apr, 2010 | Pubmed ID: 20172944
V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets.
Nature biotechnology Apr, 2010 | Pubmed ID: 20231818
Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model.
Bioinformatics (Oxford, England) Jun, 2010 | Pubmed ID: 20529931
Automatic neuron tracing in volumetric microscopy images with anisotropic path searching.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2010 | Pubmed ID: 20879349
Proof-editing is the bottleneck of 3D neuron reconstruction: the problem and solutions.
Neuroinformatics Sep, 2011 | Pubmed ID: 21170608
BrainAligner: 3D registration atlases of Drosophila brains.
Nature methods Jun, 2011 | Pubmed ID: 21532582
Automated reconstruction of neuronal morphology based on local geometrical and global structural models.
Neuroinformatics Sep, 2011 | Pubmed ID: 21547564
Anisotropic path searching for automatic neuron reconstruction.
Medical image analysis Oct, 2011 | Pubmed ID: 21669547
Automatic 3D neuron tracing using all-path pruning.
Bioinformatics (Oxford, England) Jul, 2011 | Pubmed ID: 21685076
Simultaneous recognition and segmentation of cells: application in C.elegans.
Bioinformatics (Oxford, England) Oct, 2011 | Pubmed ID: 21849395
mGRASP enables mapping mammalian synaptic connectivity with light microscopy.
Nature methods Jan, 2012 | Pubmed ID: 22138823
Bioimage informatics: a new category in Bioinformatics.
Bioinformatics (Oxford, England) Apr, 2012 | Pubmed ID: 22399678
Visualization and analysis of 3D microscopic images.
PLoS computational biology , 2012 | Pubmed ID: 22719236
Biological imaging software tools.
Nature methods Jul, 2012 | Pubmed ID: 22743775
A GAL4-driver line resource for Drosophila neurobiology.
Cell reports Oct, 2012 | Pubmed ID: 23063364
Eight pairs of descending visual neurons in the dragonfly give wing motor centers accurate population vector of prey direction.
Proceedings of the National Academy of Sciences of the United States of America Jan, 2013 | Pubmed ID: 23213224
A distance-field based automatic neuron tracing method.
BMC bioinformatics , 2013 | Pubmed ID: 23497429
Clonal development and organization of the adult Drosophila central brain.
Current biology : CB Apr, 2013 | Pubmed ID: 23541733
APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree.
Bioinformatics (Oxford, England) Jun, 2013 | Pubmed ID: 23603332
Automated cellular annotation for high-resolution images of adult Caenorhabditis elegans.
Bioinformatics (Oxford, England) Jul, 2013 | Pubmed ID: 23812982
BIOCAT: a pattern recognition platform for customizable biological image classification and annotation.
BMC bioinformatics Oct, 2013 | Pubmed ID: 24090164
Automated image computing reshapes computational neuroscience.
BMC bioinformatics Oct, 2013 | Pubmed ID: 24090217
Ludovico Silvestri1,
Alessandro Bria2,3,
Irene Costantini1,
Leonardo Sacconi1,4,
Hanchuan Peng5,
Giulio Iannello2,
Francesco Saverio Pavone1,4,6,7
1, European Laboratory for Non-linear Spectroscopy (LENS),
2Integrated Research Centre, University Campus Bio-medico of Rome,
3DAEMI, University of Cassino,
4, National Institute of Optics (CNR-INO),
5, Allen Institute for Brain Science,
6Department of Physics, University of Florence,
7, ICON Foundation, Sesto Fiorentino, Italy
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