Nynke H. Dekker

Nynke H. Dekker

Department of Bionanoscience, Delft University of Technology

Affiliated withDelft University of TechnologyUniversity of Oxford

Research Area

BioengineeringUnit 1Biochemistry

Biography

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JoVE Journal Publications

ArticleTotal : 2
Year
Magnetic Tweezers for the Measurement of Twist and Torque
Publication title
2014
2024

Other Publications

Article
Year
Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.

Nature structural & molecular biology| PubMed ID: 15300241

2004
2005
Torque-limited RecA polymerization on dsDNA.

Nucleic acids research| PubMed ID: 15824062

2005
2005
2005
Nanopore tomography of a laser focus.

Nano letters| PubMed ID: 16277463

2005
2005
2006
Multiple events on single molecules: unbiased estimation in single-molecule biophysics.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 16439482

2006
2006
2006
2007
Fast dynamics of supercoiled DNA revealed by single-molecule experiments.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 17623785

2007
An RNA toolbox for single-molecule force spectroscopy studies.

Nucleic acids research| PubMed ID: 17905817

2007
2008
Dynamics of phosphodiester synthesis by DNA ligase.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 18458338

2008
2008
2009
Quantitative modeling and optimization of magnetic tweezers.

Biophysical journal| PubMed ID: 19527664

2009
2009
Single-molecule magnetic tweezers studies of type IB topoisomerases.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 19763943

2009
2010
Controlling nanopore size, shape and stability.

Nanotechnology| PubMed ID: 20173233

2010
2010
2010
2010
2010
2010
2011
The passage of homopolymeric RNA through small solid-state nanopores.

Small (Weinheim an der Bergstrasse, Germany)| PubMed ID: 21638785

2011
Single-molecule investigations of the stringent response machinery in living bacterial cells.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 21730169

2011
2011
A method to track rotational motion for use in single-molecule biophysics.

The Review of scientific instruments| PubMed ID: 22047303

2011
Calibration of the optical torque wrench.

Optics express| PubMed ID: 22418136

2012
2012
2012
2013
2013
2013
2014
Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 25313077

2014
2014
A force calibration standard for magnetic tweezers.

The Review of scientific instruments| PubMed ID: 25554279

2014
2015
2015
2015
2015
2015
2015
2015
2015
2015
2015
2016
Hysteresis in DNA compaction by Dps is described by an Ising model.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 27091987

2016
2016
2016
2016
2017
2017
Measuring In Vivo Protein Dynamics Throughout the Cell Cycle Using Microfluidics.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 28842888

2017
2017
2017
What is all this fuss about Tus? Comparison of recent findings from biophysical and biochemical experiments.

Critical reviews in biochemistry and molecular biology| PubMed ID: 29108427

2018
2018
2018
2018
Probing Chromatin Structure with Magnetic Tweezers.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 29956240

2018
2018
Predicting Intraserotypic Recombination in Enterovirus 71.

Journal of virology| PubMed ID: 30487277

2019
2019
DNA Sequence Is a Major Determinant of Tetrasome Dynamics.

Biophysical journal| PubMed ID: 31521330

2019
Chromatin fibers stabilize nucleosomes under torsional stress.

Nature communications| PubMed ID: 31913285

2020
2020
DNA replication origins retain mobile licensing proteins.

Nature communications| PubMed ID: 33772005

2021
2022
2022
2023
2023
2024
2023
2024