Department of Biology
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Distinct mechanisms control the stability of the related S-phase cyclins Clb5 and Clb6.
Molecular and cellular biology Mar, 2006 | Pubmed ID: 16508019
A probabilistic model for cell cycle distributions in synchrony experiments.
Cell cycle (Georgetown, Tex.) Feb, 2007 | Pubmed ID: 17329975
Microtubule organization: cell shape is destiny.
Current biology : CB Apr, 2007 | Pubmed ID: 17407755
Global control of cell-cycle transcription by coupled CDK and network oscillators.
Nature Jun, 2008 | Pubmed ID: 18463633
Intrinsic and cyclin-dependent kinase-dependent control of spindle pole body duplication in budding yeast.
Molecular biology of the cell Aug, 2008 | Pubmed ID: 18480404
Transcription networks and cyclin/CDKs: the yin and yang of cell cycle oscillators.
Cell cycle (Georgetown, Tex.) Sep, 2008 | Pubmed ID: 18758238
Cell cycle analysis of budding yeast using SYTOX Green.
Current protocols in cytometry Nov, 2004 | Pubmed ID: 18770800
Cohesin: it's not just for chromosomes anymore.
Cell cycle (Georgetown, Tex.) May, 2010 | Pubmed ID: 20436287
B-cyclin/CDKs regulate mitotic spindle assembly by phosphorylating kinesins-5 in budding yeast.
PLoS genetics May, 2010 | Pubmed ID: 20463882
A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments.
Bioinformatics (Oxford, England) Jul, 2011 | Pubmed ID: 21685084
A branching process model for flow cytometry and budding index measurements in cell synchrony experiments.
The annals of applied statistics , 2009 | Pubmed ID: 21853014
Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network.
Molecular cell Mar, 2012 | Pubmed ID: 22306294
Populous: a tool for building OWL ontologies from templates.
BMC bioinformatics Jan, 2012 | Pubmed ID: 22373396
Parametric modeling of cellular state transitions as measured with flow cytometry.
BMC bioinformatics Apr, 2012 | Pubmed ID: 22537009
New and Redesigned pRS Plasmid Shuttle Vectors for Genetic Manipulation of Saccharomycescerevisiae.
G3 (Bethesda, Md.) May, 2012 | Pubmed ID: 22670222
Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program.
Proceedings of the National Academy of Sciences of the United States of America Mar, 2013 | Pubmed ID: 23388635
Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data.
Bioinformatics (Oxford, England) Dec, 2013 | Pubmed ID: 24058056
Topology and control of the cell-cycle-regulated transcriptional circuitry.
Genetics Jan, 2014 | Pubmed ID: 24395825
Cell cycle-regulated transcription: effectively using a genomics toolbox.
Methods in molecular biology (Clifton, N.J.) , 2014 | Pubmed ID: 24906306
Analyzing transcription dynamics during the budding yeast cell cycle.
Methods in molecular biology (Clifton, N.J.) , 2014 | Pubmed ID: 24906319
Checkpoints couple transcription network oscillator dynamics to cell-cycle progression.
Genome biology Sep, 2014 | Pubmed ID: 25200947
The Local Edge Machine: inference of dynamic models of gene regulation.
Genome biology 10, 2016 | Pubmed ID: 27760556
Investigating Conservation of the Cell-Cycle-Regulated Transcriptional Program in the Fungal Pathogen, Cryptococcus neoformans.
PLoS genetics Dec, 2016 | Pubmed ID: 27918582
Connecting virulence pathways to cell-cycle progression in the fungal pathogen Cryptococcus neoformans.
Current genetics Oct, 2017 | Pubmed ID: 28265742
Reconciling conflicting models for global control of cell-cycle transcription.
Cell cycle (Georgetown, Tex.) Oct, 2017 | Pubmed ID: 28934013
Layers of regulation of cell-cycle gene expression in the budding yeast Saccharomyces cerevisiae.
Molecular biology of the cell 11, 2018 | Pubmed ID: 30207828
The cell-cycle transcriptional network generates and transmits a pulse of transcription once each cell cycle.
Cell cycle (Georgetown, Tex.) 02, 2019 | Pubmed ID: 30668223
Using extremal events to characterize noisy time series.
Journal of mathematical biology 04, 2020 | Pubmed ID: 32008103
An intrinsic oscillator drives the blood stage cycle of the malaria parasite .
Science (New York, N.Y.) 05, 2020 | Pubmed ID: 32409472
Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins.
Bioinformatics (Oxford, England) Aug, 2021 | Pubmed ID: 34415301
Inference of Gene Regulatory Network Uncovers the Linkage between Circadian Clock and Crassulacean Acid Metabolism in .
Cells 08, 2021 | Pubmed ID: 34571864
Association of COVID-19 Quarantine Duration and Postquarantine Transmission Risk in 4 University Cohorts.
JAMA network open Feb, 2022 | Pubmed ID: 35212750
Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes.
BMC bioinformatics Mar, 2022 | Pubmed ID: 35300586
Predictive values of time-dense SARS-CoV-2 wastewater analysis in university campus buildings.
The Science of the total environment Aug, 2022 | Pubmed ID: 35469858
Assessment of Simulated Surveillance Testing and Quarantine in a SARS-CoV-2-Vaccinated Population of Students on a University Campus.
JAMA health forum Oct, 2021 | Pubmed ID: 35977169
Experimental guidance for discovering genetic networks through hypothesis reduction on time series.
PLoS computational biology Oct, 2022 | Pubmed ID: 36215333
Highly-automated, high-throughput replication of yeast-based logic circuit design assessments.
Synthetic biology (Oxford, England) , 2022 | Pubmed ID: 36285185
Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop.
Synthetic biology (Oxford, England) , 2023 | Pubmed ID: 37073283
Learning perturbation-inducible cell states from observability analysis of transcriptome dynamics.
Nature communications May, 2023 | Pubmed ID: 37253722
The parasite intraerythrocytic cycle and human circadian cycle are coupled during malaria infection.
Proceedings of the National Academy of Sciences of the United States of America Jun, 2023 | Pubmed ID: 37279274
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