Steven B. Haase

Department of Biology, Duke University

Research Area

Biology

Biography

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JoVE Journal Publications

Article Total : 2	Year
Publication title	2021
Publication title	2023

Other Publications

Article	Year
Distinct mechanisms control the stability of the related S-phase cyclins Clb5 and Clb6. Molecular and cellular biology\| PubMed ID: 16508019	2006
A probabilistic model for cell cycle distributions in synchrony experiments. Cell cycle (Georgetown, Tex.)\| PubMed ID: 17329975	2007
Microtubule organization: cell shape is destiny. Current biology : CB\| PubMed ID: 17407755	2007
Global control of cell-cycle transcription by coupled CDK and network oscillators. Nature\| PubMed ID: 18463633	2008
Intrinsic and cyclin-dependent kinase-dependent control of spindle pole body duplication in budding yeast. Molecular biology of the cell\| PubMed ID: 18480404	2008
Transcription networks and cyclin/CDKs: the yin and yang of cell cycle oscillators. Cell cycle (Georgetown, Tex.)\| PubMed ID: 18758238	2008
Cell cycle analysis of budding yeast using SYTOX Green. Current protocols in cytometry\| PubMed ID: 18770800	2004
Cohesin: it's not just for chromosomes anymore. Cell cycle (Georgetown, Tex.)\| PubMed ID: 20436287	2010
B-cyclin/CDKs regulate mitotic spindle assembly by phosphorylating kinesins-5 in budding yeast. PLoS genetics\| PubMed ID: 20463882	2010
A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments. Bioinformatics (Oxford, England)\| PubMed ID: 21685084	2011
A branching process model for flow cytometry and budding index measurements in cell synchrony experiments. The annals of applied statistics\| PubMed ID: 21853014	2009
Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network. Molecular cell\| PubMed ID: 22306294	2012
Populous: a tool for building OWL ontologies from templates. BMC bioinformatics\| PubMed ID: 22373396	2012
Parametric modeling of cellular state transitions as measured with flow cytometry. BMC bioinformatics\| PubMed ID: 22537009	2012
New and Redesigned pRS Plasmid Shuttle Vectors for Genetic Manipulation of Saccharomycescerevisiae. G3 (Bethesda, Md.)\| PubMed ID: 22670222	2012
Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23388635	2013
Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. Bioinformatics (Oxford, England)\| PubMed ID: 24058056	2013
Topology and control of the cell-cycle-regulated transcriptional circuitry. Genetics\| PubMed ID: 24395825	2014
Cell cycle-regulated transcription: effectively using a genomics toolbox. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 24906306	2014
Analyzing transcription dynamics during the budding yeast cell cycle. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 24906319	2014
Checkpoints couple transcription network oscillator dynamics to cell-cycle progression. Genome biology\| PubMed ID: 25200947	2014
The Local Edge Machine: inference of dynamic models of gene regulation. Genome biology\| PubMed ID: 27760556	2016
Investigating Conservation of the Cell-Cycle-Regulated Transcriptional Program in the Fungal Pathogen, Cryptococcus neoformans. PLoS genetics\| PubMed ID: 27918582	2016
Connecting virulence pathways to cell-cycle progression in the fungal pathogen Cryptococcus neoformans. Current genetics\| PubMed ID: 28265742	2017
Reconciling conflicting models for global control of cell-cycle transcription. Cell cycle (Georgetown, Tex.)\| PubMed ID: 28934013	2017
Layers of regulation of cell-cycle gene expression in the budding yeast Saccharomyces cerevisiae. Molecular biology of the cell\| PubMed ID: 30207828	2018
The cell-cycle transcriptional network generates and transmits a pulse of transcription once each cell cycle. Cell cycle (Georgetown, Tex.)\| PubMed ID: 30668223	2019
Using extremal events to characterize noisy time series. Journal of mathematical biology\| PubMed ID: 32008103	2020
An intrinsic oscillator drives the blood stage cycle of the malaria parasite . Science (New York, N.Y.)\| PubMed ID: 32409472	2020
Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins. Bioinformatics (Oxford, England)\| PubMed ID: 34415301	2021
Inference of Gene Regulatory Network Uncovers the Linkage between Circadian Clock and Crassulacean Acid Metabolism in . Cells\| PubMed ID: 34571864	2021
Association of COVID-19 Quarantine Duration and Postquarantine Transmission Risk in 4 University Cohorts. JAMA network open\| PubMed ID: 35212750	2022
Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes. BMC bioinformatics\| PubMed ID: 35300586	2022
Predictive values of time-dense SARS-CoV-2 wastewater analysis in university campus buildings. The Science of the total environment\| PubMed ID: 35469858	2022
Assessment of Simulated Surveillance Testing and Quarantine in a SARS-CoV-2-Vaccinated Population of Students on a University Campus. JAMA health forum\| PubMed ID: 35977169	2021
Experimental guidance for discovering genetic networks through hypothesis reduction on time series. PLoS computational biology\| PubMed ID: 36215333	2022
Highly-automated, high-throughput replication of yeast-based logic circuit design assessments. Synthetic biology (Oxford, England)\| PubMed ID: 36285185	2022
Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop. Synthetic biology (Oxford, England)\| PubMed ID: 37073283	2023
Learning perturbation-inducible cell states from observability analysis of transcriptome dynamics. Nature communications\| PubMed ID: 37253722	2023
The parasite intraerythrocytic cycle and human circadian cycle are coupled during malaria infection. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 37279274	2023