John K. Colbourne

Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum.

Molecular cloning of doublesex genes of four cladocera (water flea) species.

Testosterone affects neural gene expression differently in male and female juncos: a role for hormones in mediating sexual dimorphism and conflict.

Transcription patterns of genes encoding four metallothionein homologs in Daphnia pulex exposed to copper and cadmium are time- and homolog-dependent.

Function and evolution of DNA methylation in Nasonia vitripennis.

Potential for sexual conflict assessed via testosterone-mediated transcriptional changes in liver and muscle of a songbird.

Genome-wide transcription profiles reveal genotype-dependent responses of biological pathways and gene-families in Daphnia exposed to single and mixed stressors.

Transcriptome assembly and microarray construction for Enchytraeus crypticus, a model oligochaete to assess stress response mechanisms derived from soil conditions.

Genomic data integration for ecological and evolutionary traits in non-model organisms.

Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes.

Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia.

Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation.

Ionotropic glutamate receptors mediate inducible defense in the water flea Daphnia pulex.

Evolutionary divergence of core and post-translational circadian clock genes in the pitcher-plant mosquito, Wyeomyia smithii.

Novel Cadmium Responsive MicroRNAs in Daphnia pulex.

Male meiosis in Crustacea: synapsis, recombination, epigenetics and fertility in Daphnia magna.

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.

Thermal variation and factors influencing vertical migration behavior in Daphnia populations.

OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis.

The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish.

The landscape of extreme genomic variation in the highly adaptable Atlantic killifish.

Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.

Conserved Transcription Factors Steer Growth-Related Genomic Programs in Daphnia.

Evolutionary transition from blood feeding to obligate nonbiting in a mosquito.

The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.

How omics technologies can enhance chemical safety regulation: perspectives from academia, government, and industry: The Perspectives column is a regular series designed to discuss and evaluate potentially competing viewpoints and research findings on current environmental issues.

The transcriptomic and proteomic responses of Daphnia pulex to changes in temperature and food supply comprise environment-specific and clone-specific elements.

Scan, extract, wrap, compute-a 3D method to analyse morphological shape differences.

Arsenic Reduces Gene Expression Response to Changing Salinity in Killifish.

Pattern of DNA Methylation in Daphnia: Evolutionary Perspective.

Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms.

Mitotic activity patterns and cytoskeletal changes throughout the progression of diapause developmental program in Daphnia.

Mixtures of Aluminum and Indium Induce More than Additive Phenotypic and Toxicogenomic Responses in Daphnia magna.

Transgenerational response to early spring warming in Daphnia.

Improved Algal Toxicity Test System for Robust -Driven Mode-of-Action Discovery in .

Vision of a near future: Bridging the human health-environment divide. Toward an integrated strategy to understand mechanisms across species for chemical safety assessment.

Dynamics of Cadmium Acclimation in : Linking Fitness Costs, Cross-Tolerance, and Hyper-Induction of Metallothionein.

A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex.

Sex biased expression and co-expression networks in development, using the hymenopteran Nasonia vitripennis.

Broccoli: Combining Phylogenetic and Network Analyses for Orthology Assignment.

Spatio-temporal processes drive fine-scale genetic structure in an otherwise panmictic seabird population.

Centennial clonal stability of asexual in Greenland lakes despite climate variability.

Extensive standing genetic variation from a small number of founders enables rapid adaptation in Daphnia.

Refining the evolutionary time machine: An assessment of whole genome amplification using single historical Daphnia eggs.

Knowledge-Driven Approaches to Create the MTox700+ Metabolite Panel for Predicting Toxicity.

Combined exome and transcriptome sequencing of non-muscle-invasive bladder cancer: associations between genomic changes, expression subtypes, and clinical outcomes.

as a Sentinel Species for Environmental Health Protection: A Perspective on Biomonitoring and Bioremediation of Chemical Pollution.

Modernizing persistence-bioaccumulation-toxicity (PBT) assessment with high throughput animal-free methods.

The hologenome of Daphnia magna reveals possible DNA methylation and microbiome-mediated evolution of the host genome.

100 years of anthropogenic impact causes changes in freshwater functional biodiversity.