School of Biosciences
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Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum.
BMC genomics Feb, 2013 | Pubmed ID: 23445305
Molecular cloning of doublesex genes of four cladocera (water flea) species.
BMC genomics Apr, 2013 | Pubmed ID: 23575357
Testosterone affects neural gene expression differently in male and female juncos: a role for hormones in mediating sexual dimorphism and conflict.
PloS one , 2013 | Pubmed ID: 23613935
Transcription patterns of genes encoding four metallothionein homologs in Daphnia pulex exposed to copper and cadmium are time- and homolog-dependent.
Aquatic toxicology (Amsterdam, Netherlands) Oct, 2013 | Pubmed ID: 24113165
Function and evolution of DNA methylation in Nasonia vitripennis.
PLoS genetics , 2013 | Pubmed ID: 24130511
Potential for sexual conflict assessed via testosterone-mediated transcriptional changes in liver and muscle of a songbird.
The Journal of experimental biology Feb, 2014 | Pubmed ID: 24198265
Genome-wide transcription profiles reveal genotype-dependent responses of biological pathways and gene-families in Daphnia exposed to single and mixed stressors.
Environmental science & technology Mar, 2014 | Pubmed ID: 24552364
Transcriptome assembly and microarray construction for Enchytraeus crypticus, a model oligochaete to assess stress response mechanisms derived from soil conditions.
BMC genomics , 2014 | Pubmed ID: 24758194
Genomic data integration for ecological and evolutionary traits in non-model organisms.
BMC genomics Jul, 2014 | Pubmed ID: 25047861
Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes.
Molecular biology and evolution Nov, 2014 | Pubmed ID: 25158801
Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia.
BMC genomics Oct, 2014 | Pubmed ID: 25282344
Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation.
Genome biology Dec, 2014 | Pubmed ID: 25609551
Ionotropic glutamate receptors mediate inducible defense in the water flea Daphnia pulex.
PloS one , 2015 | Pubmed ID: 25799112
Evolutionary divergence of core and post-translational circadian clock genes in the pitcher-plant mosquito, Wyeomyia smithii.
BMC genomics Oct, 2015 | Pubmed ID: 26444857
Novel Cadmium Responsive MicroRNAs in Daphnia pulex.
Environmental science & technology Dec, 2015 | Pubmed ID: 26550707
Male meiosis in Crustacea: synapsis, recombination, epigenetics and fertility in Daphnia magna.
Chromosoma Sep, 2016 | Pubmed ID: 26685998
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.
Scientific data 05, 2016 | Pubmed ID: 27164179
Thermal variation and factors influencing vertical migration behavior in Daphnia populations.
Journal of thermal biology Aug, 2016 | Pubmed ID: 27503718
OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis.
BMC genomics Aug, 2016 | Pubmed ID: 27561358
The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish.
Science (New York, N.Y.) Dec, 2016 | Pubmed ID: 27940876
The landscape of extreme genomic variation in the highly adaptable Atlantic killifish.
Genome biology and evolution Mar, 2017 | Pubmed ID: 28201664
Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.
Molecular ecology Jul, 2017 | Pubmed ID: 28746735
Conserved Transcription Factors Steer Growth-Related Genomic Programs in Daphnia.
Genome biology and evolution Jun, 2017 | Pubmed ID: 28854641
Evolutionary transition from blood feeding to obligate nonbiting in a mosquito.
Proceedings of the National Academy of Sciences of the United States of America Jan, 2018 | Pubmed ID: 29255013
The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.
Environmental science & technology May, 2018 | Pubmed ID: 29634279
How omics technologies can enhance chemical safety regulation: perspectives from academia, government, and industry: The Perspectives column is a regular series designed to discuss and evaluate potentially competing viewpoints and research findings on current environmental issues.
Environmental toxicology and chemistry May, 2018 | Pubmed ID: 29697867
The transcriptomic and proteomic responses of Daphnia pulex to changes in temperature and food supply comprise environment-specific and clone-specific elements.
BMC genomics May, 2018 | Pubmed ID: 29783951
Scan, extract, wrap, compute-a 3D method to analyse morphological shape differences.
PeerJ , 2018 | Pubmed ID: 29900069
Arsenic Reduces Gene Expression Response to Changing Salinity in Killifish.
Environmental science & technology Aug, 2018 | Pubmed ID: 29979584
Pattern of DNA Methylation in Daphnia: Evolutionary Perspective.
Genome biology and evolution Aug, 2018 | Pubmed ID: 30060190
Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms.
Communications biology , 2018 | Pubmed ID: 30271891
Mitotic activity patterns and cytoskeletal changes throughout the progression of diapause developmental program in Daphnia.
BMC cell biology Dec, 2018 | Pubmed ID: 30594127
Mixtures of Aluminum and Indium Induce More than Additive Phenotypic and Toxicogenomic Responses in Daphnia magna.
Environmental science & technology Feb, 2019 | Pubmed ID: 30608651
Transgenerational response to early spring warming in Daphnia.
Scientific reports Mar, 2019 | Pubmed ID: 30872717
Improved Algal Toxicity Test System for Robust -Driven Mode-of-Action Discovery in .
Metabolites May, 2019 | Pubmed ID: 31083411
Vision of a near future: Bridging the human health-environment divide. Toward an integrated strategy to understand mechanisms across species for chemical safety assessment.
Toxicology in vitro : an international journal published in association with BIBRA Feb, 2020 | Pubmed ID: 31669395
Dynamics of Cadmium Acclimation in : Linking Fitness Costs, Cross-Tolerance, and Hyper-Induction of Metallothionein.
Environmental science & technology Dec, 2019 | Pubmed ID: 31738529
A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex.
BMC genomics Jan, 2020 | Pubmed ID: 31906859
Sex biased expression and co-expression networks in development, using the hymenopteran Nasonia vitripennis.
PLoS genetics Jan, 2020 | Pubmed ID: 31986136
Broccoli: Combining Phylogenetic and Network Analyses for Orthology Assignment.
Molecular biology and evolution Nov, 2020 | Pubmed ID: 32602888
Spatio-temporal processes drive fine-scale genetic structure in an otherwise panmictic seabird population.
Scientific reports Nov, 2020 | Pubmed ID: 33244100
Centennial clonal stability of asexual in Greenland lakes despite climate variability.
Ecology and evolution Dec, 2020 | Pubmed ID: 33391708
Extensive standing genetic variation from a small number of founders enables rapid adaptation in Daphnia.
Nature communications Jul, 2021 | Pubmed ID: 34262034
Refining the evolutionary time machine: An assessment of whole genome amplification using single historical Daphnia eggs.
Molecular ecology resources Apr, 2022 | Pubmed ID: 34672105
Knowledge-Driven Approaches to Create the MTox700+ Metabolite Panel for Predicting Toxicity.
Toxicological sciences : an official journal of the Society of Toxicology Mar, 2022 | Pubmed ID: 35094093
Combined exome and transcriptome sequencing of non-muscle-invasive bladder cancer: associations between genomic changes, expression subtypes, and clinical outcomes.
Genome medicine Jun, 2022 | Pubmed ID: 35655252
as a Sentinel Species for Environmental Health Protection: A Perspective on Biomonitoring and Bioremediation of Chemical Pollution.
Environmental science & technology Oct, 2022 | Pubmed ID: 36169655
Modernizing persistence-bioaccumulation-toxicity (PBT) assessment with high throughput animal-free methods.
Archives of toxicology Mar, 2023 | Pubmed ID: 36952002
The hologenome of Daphnia magna reveals possible DNA methylation and microbiome-mediated evolution of the host genome.
Nucleic acids research Oct, 2023 | Pubmed ID: 37638757
100 years of anthropogenic impact causes changes in freshwater functional biodiversity.
eLife Nov, 2023 | Pubmed ID: 37933221
Jessica M. Holsopple*,1,2,
Shannon R. Smoot*,1,
Ellen M. Popodi1,2,
John K. Colbourne3,
Joseph R. Shaw4,
Brian Oliver5,
Thomas C. Kaufman1,
Jason M. Tennessen1
1Department of Biology, Indiana University,
2Bloomington Drosophila Stock Center, Department of Biology, Indiana University,
3School of Biosciences, University of Birmingham,
4O'Neill School of Public and Environmental Affairs, Indiana University,
5Section of Developmental Genomics, Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Kidney and Digestive Diseases, National Institutes of Health
Gaëlle Hayot1,
Daniel Marcato1,2,
Christina A. Cramer von Clausbruch1,
Giuseppina Pace1,
Uwe Strähle1,3,
John K. Colbourne4,
Christian Pylatiuk5,
Ravindra Peravali1,
Carsten Weiss1,
Stefan Scholz6,
Thomas Dickmeis1
1Institute of Biological and Chemical Systems - Biological Information Processing, Karlsruhe Institute of Technology - Campus Nord,
2, DITABIS AG - Digital Biomedical Imaging Systems AG,
3Centre for Organismal Studies, Heidelberg University,
4School of Biosciences, University of Birmingham,
5Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology - Campus Nord,
6Department of Bioanalytical Ecotoxicology, Helmholtz-Centre for Environmental Research - UFZ
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