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Specific and nonspecific hybridization of oligonucleotide probes on microarrays.
Biophysical journal Jul, 2005 | Pubmed ID: 15834006
Base pair interactions and hybridization isotherms of matched and mismatched oligonucleotide probes on microarrays.
Langmuir : the ACS journal of surfaces and colloids Sep, 2005 | Pubmed ID: 16171364
"Hook"-calibration of GeneChip-microarrays: chip characteristics and expression measures.
Algorithms for molecular biology : AMB , 2008 | Pubmed ID: 18759984
"Hook"-calibration of GeneChip-microarrays: theory and algorithm.
Algorithms for molecular biology : AMB , 2008 | Pubmed ID: 18759985
Globally optimal stitching of tiled 3D microscopic image acquisitions.
Bioinformatics (Oxford, England) Jun, 2009 | Pubmed ID: 19346324
Calibration of microarray gene-expression data.
Methods in molecular biology (Clifton, N.J.) , 2010 | Pubmed ID: 19882273
Software for bead-based registration of selective plane illumination microscopy data.
Nature methods Jun, 2010 | Pubmed ID: 20508634
Planar cell polarity signalling regulates cell adhesion properties in progenitors of the zebrafish laterality organ.
Development (Cambridge, England) Oct, 2010 | Pubmed ID: 20843857
An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy.
PLoS biology , 2010 | Pubmed ID: 20957184
Global analysis of nascent RNA reveals transcriptional pausing in terminal exons.
Molecular cell Nov, 2010 | Pubmed ID: 21095587
Gene expression divergence recapitulates the developmental hourglass model.
Nature Dec, 2010 | Pubmed ID: 21150996
Restoration of uneven illumination in light sheet microscopy images.
Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada Aug, 2011 | Pubmed ID: 21682937
TrakEM2 software for neural circuit reconstruction.
PloS one , 2012 | Pubmed ID: 22723842
Fiji: an open-source platform for biological-image analysis.
Nature methods Jul, 2012 | Pubmed ID: 22743772
ImgLib2--generic image processing in Java.
Bioinformatics (Oxford, England) Nov, 2012 | Pubmed ID: 22962343
OpenSPIM: an open-access light-sheet microscopy platform.
Nature methods Jul, 2013 | Pubmed ID: 23749304
Bioimage Informatics in the context of Drosophila research.
Methods (San Diego, Calif.) Jun, 2014 | Pubmed ID: 24732429
Efficient Bayesian-based multiview deconvolution.
Nature methods Jun, 2014 | Pubmed ID: 24747812
Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking.
The Journal of cell biology May, 2015 | Pubmed ID: 26008747
BigDataViewer: visualization and processing for large image data sets.
Nature methods Jun, 2015 | Pubmed ID: 26020499
An automated workflow for parallel processing of large multiview SPIM recordings.
Bioinformatics (Oxford, England) Dec, 2015 | Pubmed ID: 26628585
Max Planck Institute of Molecular Cell Biology and Genetics
HHMI Janelia Research Campus
Berlin Institute of Medical Systems Biology of the Max Delbrück Center
Jaroslav Icha*,1,
Christopher Schmied*,1,
Jaydeep Sidhaye1,
Pavel Tomancak1,
Stephan Preibisch1,2,3,
Caren Norden1
1, Max Planck Institute of Molecular Cell Biology and Genetics,
2, HHMI Janelia Research Campus,
3, Berlin Institute of Medical Systems Biology of the Max Delbrück Center
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