Namshin Kim

ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences.

ECgene: genome annotation for alternative splicing.

ECgene: genome-based EST clustering and gene modeling for alternative splicing.

ASePCR: alternative splicing electronic RT-PCR in multiple tissues and organs.

ChimerDB--a knowledgebase for fusion sequences.

The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species.

ECgene: an alternative splicing database update.

Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes.

Three-Dimensional Phylogeny Explorer: distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization.

QPRIMER: a quick web-based application for designing conserved PCR primers from multigenome alignments.

Bioinformatics detection of alternative splicing.

Integration site preference of xenotropic murine leukemia virus-related virus, a new human retrovirus associated with prostate cancer.

The effect of intron length on exon creation ratios during the evolution of mammalian genomes.

Human immunodeficiency virus integration efficiency and site selection in quiescent CD4+ T cells.

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication.

ChimerDB 2.0--a knowledgebase for fusion genes updated.

Massive expansions of Dscam splicing diversity via staggered homologous recombination during arthropod evolution.

High-throughput, sensitive quantification of repopulating hematopoietic stem cell clones.

Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium.

Methodology and software to detect viral integration site hot-spots.

Whole-exome sequencing identifies mutations of KIF22 in spondyloepimetaphyseal dysplasia with joint laxity, leptodactylic type.

Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing.

Dynamic genetic features of chromosomes revealed by comparison of soybean genetic and sequence-based physical maps.

A high-dimensional, deep-sequencing study of lung adenocarcinoma in female never-smokers.

Investigation of radiation-induced transcriptome profile of radioresistant non-small cell lung cancer A549 cells using RNA-seq.

Bioinformatics interpretation of exome sequencing: blood cancer.

Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity.

Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels.

Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex.

Population structure and domestication revealed by high-depth resequencing of Korean cultivated and wild soybean genomes.

Transcription-related element gene expression pattern differs between microglia and macrophages during inflammation.

Dynamics of HSPC repopulation in nonhuman primates revealed by a decade-long clonal-tracking study.

Whole-exome sequencing identifies a novel genotype-phenotype correlation in the entactin domain of the known deafness gene TECTA.

The complete mitochondrial genome of cultivated radish WK10039 (Raphanus sativus L.).

Whole-genome analyses of Korean native and Holstein cattle breeds by massively parallel sequencing.

Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassica.

Complete Genome Sequence of Bacillus anthracis HYU01, Isolated from Soil Samples in the Korean Peninsula.

Global transcriptome profiling of genes that are differentially regulated during differentiation of mouse embryonic neural stem cells into astrocytes.

De novo assembly and characterization of the complete chloroplast genome of radish (Raphanus sativus L.).

Deep sequencing reveals low incidence of endogenous LINE-1 retrotransposition in human induced pluripotent stem cells.

Construction of a reference genetic map of Raphanus sativus based on genotyping by whole-genome resequencing.

Orthopaedic manifestations and treatment outcome of two siblings with Escobar syndrome and homozygous mutations in the CHRNG gene.

Development, validation and genetic analysis of a large soybean SNP genotyping array.

A genome-wide scan for signatures of directional selection in domesticated pigs.

Whole exome sequencing for a patient with Rubinstein-Taybi syndrome reveals de novo variants besides an overt CREBBP mutation.

Frequency and spectrum of actionable pathogenic secondary findings in 196 Korean exomes.

Exploring the genetic signature of body size in Yucatan miniature pig.

Adverse prognostic effect of homozygous TET2 mutation on the relapse risk of acute myeloid leukemia in patients of normal karyotype.

Whole-genome resequencing analyses of five pig breeds, including Korean wild and native, and three European origin breeds.

Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals.

Effect of Next-Generation Exome Sequencing Depth for Discovery of Diagnostic Variants.

Transcriptomic Features of Bovine Blastocysts Derived by Somatic Cell Nuclear Transfer.

Prognostic and functional importance of the engraftment-associated genes in the patient-derived xenograft models of triple-negative breast cancers.

Identification of haplotypes at the Rsv4 genomic region in soybean associated with durable resistance to soybean mosaic virus.

The Clinical Significance and Molecular Features of the Spatial Tumor Shapes in Breast Cancers.

CLEC4C p.K210del variant causes impaired cell surface transport in plasmacytoid dendritic cells of amyotrophic lateral sclerosis.

Response to Biesecker.

Elucidating the triplicated ancestral genome structure of radish based on chromosome-level comparison with the Brassica genomes.

Copy number variations in Hanwoo and Yanbian cattle genomes using the massively parallel sequencing data.

Identification of candidate domestication regions in the radish genome based on high-depth resequencing analysis of 17 genotypes.