Personalized Genomic Medicine Research Center,
Division of Strategic Research Groups,
Personalized Genomic Medicine Research Center, Division of Strategic Research Groups
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ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences.
Nucleic acids research Jul, 2004 | Pubmed ID: 15215376
ECgene: genome annotation for alternative splicing.
Nucleic acids research Jan, 2005 | Pubmed ID: 15608289
ECgene: genome-based EST clustering and gene modeling for alternative splicing.
Genome research Apr, 2005 | Pubmed ID: 15805497
ASePCR: alternative splicing electronic RT-PCR in multiple tissues and organs.
Nucleic acids research Jul, 2005 | Pubmed ID: 15980562
ChimerDB--a knowledgebase for fusion sequences.
Nucleic acids research Jan, 2006 | Pubmed ID: 16381848
The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species.
Nucleic acids research Jan, 2007 | Pubmed ID: 17108355
ECgene: an alternative splicing database update.
Nucleic acids research Jan, 2007 | Pubmed ID: 17132829
Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes.
RNA (New York, N.Y.) May, 2007 | Pubmed ID: 17369312
Three-Dimensional Phylogeny Explorer: distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization.
BMC bioinformatics Jun, 2007 | Pubmed ID: 17584922
QPRIMER: a quick web-based application for designing conserved PCR primers from multigenome alignments.
Bioinformatics (Oxford, England) Sep, 2007 | Pubmed ID: 17599926
Bioinformatics detection of alternative splicing.
Methods in molecular biology (Clifton, N.J.) , 2008 | Pubmed ID: 18566765
Integration site preference of xenotropic murine leukemia virus-related virus, a new human retrovirus associated with prostate cancer.
Journal of virology Oct, 2008 | Pubmed ID: 18684813
The effect of intron length on exon creation ratios during the evolution of mammalian genomes.
RNA (New York, N.Y.) Nov, 2008 | Pubmed ID: 18796579
Human immunodeficiency virus integration efficiency and site selection in quiescent CD4+ T cells.
Journal of virology Jun, 2009 | Pubmed ID: 19369341
A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.
BMC genomics Apr, 2009 | Pubmed ID: 19379481
Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication.
Genome biology , 2009 | Pubmed ID: 19821981
ChimerDB 2.0--a knowledgebase for fusion genes updated.
Nucleic acids research Jan, 2010 | Pubmed ID: 19906715
Massive expansions of Dscam splicing diversity via staggered homologous recombination during arthropod evolution.
RNA (New York, N.Y.) Jan, 2010 | Pubmed ID: 19934230
High-throughput, sensitive quantification of repopulating hematopoietic stem cell clones.
Journal of virology Nov, 2010 | Pubmed ID: 20844053
Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium.
Journal of bacteriology Sep, 2011 | Pubmed ID: 21742878
Methodology and software to detect viral integration site hot-spots.
BMC bioinformatics Sep, 2011 | Pubmed ID: 21914224
Whole-exome sequencing identifies mutations of KIF22 in spondyloepimetaphyseal dysplasia with joint laxity, leptodactylic type.
American journal of human genetics Dec, 2011 | Pubmed ID: 22152677
Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing.
BMC plant biology Nov, 2012 | Pubmed ID: 23163954
Dynamic genetic features of chromosomes revealed by comparison of soybean genetic and sequence-based physical maps.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik Apr, 2013 | Pubmed ID: 23306355
A high-dimensional, deep-sequencing study of lung adenocarcinoma in female never-smokers.
PloS one , 2013 | Pubmed ID: 23405175
Investigation of radiation-induced transcriptome profile of radioresistant non-small cell lung cancer A549 cells using RNA-seq.
PloS one , 2013 | Pubmed ID: 23533613
Bioinformatics interpretation of exome sequencing: blood cancer.
Genomics & informatics Mar, 2013 | Pubmed ID: 23613679
Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity.
BMC genomics Jul, 2013 | Pubmed ID: 23899338
Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels.
Molecules and cells Sep, 2013 | Pubmed ID: 23912596
Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex.
Mammalian genome : official journal of the International Mammalian Genome Society Dec, 2013 | Pubmed ID: 24202129
Population structure and domestication revealed by high-depth resequencing of Korean cultivated and wild soybean genomes.
DNA research : an international journal for rapid publication of reports on genes and genomes , 2014 | Pubmed ID: 24271940
Transcription-related element gene expression pattern differs between microglia and macrophages during inflammation.
Inflammation research : official journal of the European Histamine Research Society ... [et al.] May, 2014 | Pubmed ID: 24468891
Dynamics of HSPC repopulation in nonhuman primates revealed by a decade-long clonal-tracking study.
Cell stem cell Apr, 2014 | Pubmed ID: 24702996
Whole-exome sequencing identifies a novel genotype-phenotype correlation in the entactin domain of the known deafness gene TECTA.
PloS one , 2014 | Pubmed ID: 24816743
The complete mitochondrial genome of cultivated radish WK10039 (Raphanus sativus L.).
Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis , 2016 | Pubmed ID: 24937570
Whole-genome analyses of Korean native and Holstein cattle breeds by massively parallel sequencing.
PloS one , 2014 | Pubmed ID: 24992012
Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassica.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik Sep, 2014 | Pubmed ID: 25056003
Complete Genome Sequence of Bacillus anthracis HYU01, Isolated from Soil Samples in the Korean Peninsula.
Genome announcements Aug, 2014 | Pubmed ID: 25103761
Global transcriptome profiling of genes that are differentially regulated during differentiation of mouse embryonic neural stem cells into astrocytes.
Journal of molecular neuroscience : MN Jan, 2015 | Pubmed ID: 25104607
De novo assembly and characterization of the complete chloroplast genome of radish (Raphanus sativus L.).
Gene Nov, 2014 | Pubmed ID: 25151309
Deep sequencing reveals low incidence of endogenous LINE-1 retrotransposition in human induced pluripotent stem cells.
PloS one , 2014 | Pubmed ID: 25289675
Construction of a reference genetic map of Raphanus sativus based on genotyping by whole-genome resequencing.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik Feb, 2015 | Pubmed ID: 25403353
Orthopaedic manifestations and treatment outcome of two siblings with Escobar syndrome and homozygous mutations in the CHRNG gene.
Journal of pediatric orthopedics. Part B May, 2015 | Pubmed ID: 25411939
Development, validation and genetic analysis of a large soybean SNP genotyping array.
The Plant journal : for cell and molecular biology Feb, 2015 | Pubmed ID: 25641104
A genome-wide scan for signatures of directional selection in domesticated pigs.
BMC genomics Feb, 2015 | Pubmed ID: 25765548
Whole exome sequencing for a patient with Rubinstein-Taybi syndrome reveals de novo variants besides an overt CREBBP mutation.
International journal of molecular sciences Mar, 2015 | Pubmed ID: 25768348
Frequency and spectrum of actionable pathogenic secondary findings in 196 Korean exomes.
Genetics in medicine : official journal of the American College of Medical Genetics Dec, 2015 | Pubmed ID: 25856671
Exploring the genetic signature of body size in Yucatan miniature pig.
PloS one , 2015 | Pubmed ID: 25885114
Adverse prognostic effect of homozygous TET2 mutation on the relapse risk of acute myeloid leukemia in patients of normal karyotype.
Haematologica Sep, 2015 | Pubmed ID: 26045292
Whole-genome resequencing analyses of five pig breeds, including Korean wild and native, and three European origin breeds.
DNA research : an international journal for rapid publication of reports on genes and genomes Aug, 2015 | Pubmed ID: 26117497
Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals.
Plant physiology Sep, 2015 | Pubmed ID: 26175514
Effect of Next-Generation Exome Sequencing Depth for Discovery of Diagnostic Variants.
Genomics & informatics Jun, 2015 | Pubmed ID: 26175660
Transcriptomic Features of Bovine Blastocysts Derived by Somatic Cell Nuclear Transfer.
G3 (Bethesda, Md.) Sep, 2015 | Pubmed ID: 26342001
Prognostic and functional importance of the engraftment-associated genes in the patient-derived xenograft models of triple-negative breast cancers.
Breast cancer research and treatment Nov, 2015 | Pubmed ID: 26438141
Identification of haplotypes at the Rsv4 genomic region in soybean associated with durable resistance to soybean mosaic virus.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik Mar, 2016 | Pubmed ID: 26649868
The Clinical Significance and Molecular Features of the Spatial Tumor Shapes in Breast Cancers.
PloS one , 2015 | Pubmed ID: 26669540
CLEC4C p.K210del variant causes impaired cell surface transport in plasmacytoid dendritic cells of amyotrophic lateral sclerosis.
Oncotarget May, 2016 | Pubmed ID: 26943047
Response to Biesecker.
Genetics in medicine : official journal of the American College of Medical Genetics Apr, 2016 | Pubmed ID: 26963279
Elucidating the triplicated ancestral genome structure of radish based on chromosome-level comparison with the Brassica genomes.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik Jul, 2016 | Pubmed ID: 27038817
Copy number variations in Hanwoo and Yanbian cattle genomes using the massively parallel sequencing data.
Gene Sep, 2016 | Pubmed ID: 27188257
Identification of candidate domestication regions in the radish genome based on high-depth resequencing analysis of 17 genotypes.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik Sep, 2016 | Pubmed ID: 27377547
Gajendra W. Suryawanshi*,1,2,
Song Xu*,3,
Yiming Xie1,
Tom Chou3,
Namshin Kim4,
Irvin S. Y. Chen1,5,
Sanggu Kim6
1UCLA AIDS Institute, University of California at Los Angeles (UCLA),
2Department of Microbiology, Immunology, & Molecular Genetics, University of California at Los Angeles (UCLA),
3Departments of Biomathematics and Mathematics, University of California at Los Angeles (UCLA),
4Personalized Genomic Medicine Research Center, Division of Strategic Research Groups, Korea Research Institute of Bioscience and Biotechnology,
5Department of Medicine, University of California at Los Angeles (UCLA),
6Department of Veterinary Biosciences, College of Veterinary Medicine, The Ohio State University (OSU)
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