Department of Bioengineering,
Biology and Biological Engineering
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Regulatory activity revealed by dynamic correlations in gene expression noise.
Nature genetics Dec, 2008 | Pubmed ID: 19029898
Dynamics and stability of a class of low Reynolds number swimmers near a wall.
Physical review. E, Statistical, nonlinear, and soft matter physics Apr, 2009 | Pubmed ID: 19518287
Flight dynamics and control of evasive maneuvers: the fruit fly's takeoff.
IEEE transactions on bio-medical engineering Sep, 2009 | Pubmed ID: 19643699
Controlling biological networks by time-delayed signals.
Philosophical transactions. Series A, Mathematical, physical, and engineering sciences Jan, 2010 | Pubmed ID: 20008410
Autonomous driving in urban environments: approaches, lessons and challenges.
Philosophical transactions. Series A, Mathematical, physical, and engineering sciences Oct, 2010 | Pubmed ID: 20819826
Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response.
Proceedings of the National Academy of Sciences of the United States of America Nov, 2012 | Pubmed ID: 23150580
Discriminating external and internal causes for heading changes in freely flying Drosophila.
PLoS computational biology , 2013 | Pubmed ID: 23468601
Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system.
ACS synthetic biology Jun, 2014 | Pubmed ID: 24303785
Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription-translation (TX-TL) systems.
ACS synthetic biology May, 2015 | Pubmed ID: 24621257
Flying Drosophila stabilize their vision-based velocity controller by sensing wind with their antennae.
Proceedings of the National Academy of Sciences of the United States of America Apr, 2014 | Pubmed ID: 24639532
Gene circuit performance characterization and resource usage in a cell-free "breadboard".
ACS synthetic biology Jun, 2014 | Pubmed ID: 24670245
Synthetic circuit for exact adaptation and fold-change detection.
Nucleic acids research May, 2014 | Pubmed ID: 24728988
Design and implementation of a biomolecular concentration tracker.
ACS synthetic biology Feb, 2015 | Pubmed ID: 24847683
Population diversification in a yeast metabolic program promotes anticipation of environmental shifts.
PLoS biology Jan, 2015 | Pubmed ID: 25626086
Characterizing and prototyping genetic networks with cell-free transcription-translation reactions.
Methods (San Diego, Calif.) Sep, 2015 | Pubmed ID: 26022922
An analytical approach to bistable biological circuit discrimination using real algebraic geometry.
Journal of the Royal Society, Interface Jul, 2015 | Pubmed ID: 26109633
Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor.
ACS synthetic biology Apr, 2016 | Pubmed ID: 26262913
Rapid cell-free forward engineering of novel genetic ring oscillators.
eLife Oct, 2015 | Pubmed ID: 26430766
A population-based temporal logic gate for timing and recording chemical events.
Molecular systems biology 05, 2016 | Pubmed ID: 27193783
Design of a Toolbox of RNA Thermometers.
ACS synthetic biology 08, 2017 | Pubmed ID: 28437108
Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks.
Journal of the Royal Society, Interface 05, 2017 | Pubmed ID: 28566513
Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks.
Cell systems Jul, 2017 | Pubmed ID: 28734826
Cell-free extract based optimization of biomolecular circuits with droplet microfluidics.
Lab on a chip 09, 2017 | Pubmed ID: 28770936
Stability of Systems with Stochastic Delays and Applications to Genetic Regulatory Networks.
SIAM journal on applied dynamical systems , 2016 | Pubmed ID: 28936130
The effects of time-varying temperature on delays in genetic networks.
SIAM journal on applied dynamical systems , 2016 | Pubmed ID: 29081723
Cell-Free and In Vivo Characterization of Lux, Las, and Rpa Quorum Activation Systems in E. coli.
ACS synthetic biology 02, 2018 | Pubmed ID: 29120612
On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3.
Analytical biochemistry 09, 2018 | Pubmed ID: 29936096
Construction of Incoherent Feedforward Loop Circuits in a Cell-Free System and in Cells.
ACS synthetic biology 03, 2019 | Pubmed ID: 30790525
Hard Limits and Performance Tradeoffs in a Class of Antithetic Integral Feedback Networks.
Cell systems 07, 2019 | Pubmed ID: 31279505
A method for cost-effective and rapid characterization of engineered T7-based transcription factors by cell-free protein synthesis reveals insights into the regulation of T7 RNA polymerase-driven expression.
Archives of biochemistry and biophysics 10, 2019 | Pubmed ID: 31326518
Guidelines for designing the antithetic feedback motif.
Physical biology 08, 2020 | Pubmed ID: 32217822
Assessment of Robustness to Temperature in a Negative Feedback Loop and a Feedforward Loop.
ACS synthetic biology 07, 2020 | Pubmed ID: 32525658
Analysis of primitive genetic interactions for the design of a genetic signal differentiator.
Synthetic biology (Oxford, England) , 2019 | Pubmed ID: 32995540
Synthetic logic circuits using RNA aptamer against T7 RNA polymerase.
Biotechnology journal Apr, 2021 | Pubmed ID: 33813787
Guiding Ethical Principles in Engineering Biology Research.
ACS synthetic biology 05, 2021 | Pubmed ID: 33977723
A MATLAB toolbox for modeling genetic circuits in cell-free systems.
Synthetic biology (Oxford, England) , 2021 | Pubmed ID: 33981862