1) תא הכנה <ol style=";text-align:right;direction:rtl"><li style=";text-align:right;direction:rtl"> בעת שימוש בתאי חסיד, יש צורך trypsinize לאסוף את התאים לפני electroporation. </li><li style=";text-align:right;direction:rtl"> כדי להשוות transfection בין ארבעת עובריים בעכבר פיברובלסטים (MEF) תרבויות, המייצג שלושה מספרים מעבר שונות, לבצע את הפעולות הבאות על כל בקבוק. </li><li style=";text-align:right;direction:rtl"> לשאוב את תרבות התקשורת הסלולרי. </li><li style=";text-align:right;direction:rtl"> הוסף PBS לשטוף את התאים. </li><li style=";text-align:right;direction:rtl"> הסר PBS; להוסיף טריפסין מספיק כדי לכסות תאים, לחכות כמה דקות כדי לאפשר טריפסין לנתק את התאים. </li><li style=";text-align:right;direction:rtl"> בדוק צלוחיות עם מיקרוסקופ כדי לוודא את מצבם של התאים, הרואין בקבוק לנתק את התאים, ולאחר מכן לבדוק שוב בקבוק להפוך תאים בטוח מנותקים מכל. </li><li style=";text-align:right;direction:rtl"> חכו זמן נוסף וחזור במידת הצורך. </li><li style=";text-align:right;direction:rtl"> לאחר כל התאים מנותקים, להוסיף מדיה המכילה סרום לנטרל טריפסין. </li><li style=";text-align:right;direction:rtl"> העברת התאים צינור צנטריפוגות, ותאי גלולה ידי צנטריפוגה (RCF = 300 XG). </li><li style=";text-align:right;direction:rtl"> הסרת תאים supernatant ו resuspend בנפח ידוע של PBS. </li><li style=";text-align:right;direction:rtl"> ספירת תאים. </li><li style=";text-align:right;direction:rtl"> מעבירים צינור חדש נפח מתאים של השעיה תאים סלולריים כדי לספק את המספר הדרוש של תאים לניסויים (תצטרך 150 μL של תאים לכל גם בצפיפות של 1 x 10 6 תאים / מ&quot;ל). </li><li style=";text-align:right;direction:rtl"> צנטריפוגה תאים. </li><li style=";text-align:right;direction:rtl"> הסרת תאים supernatant ו resuspend בהיקף המתאים חיץ Pulser electroporation ג&#39;ין להשיג צפיפות התאים של 1 x 10 6 תאים / מ&quot;ל. </li><li style=";text-align:right;direction:rtl"> הוסף 20 מ&quot;ל של מיקרוגרם לכל פלסמיד ההשעיה תא ומערבבים בעדינות. </li></ol> 2) כלי electroporation ההתקנה electroporation פלייט ההתקנה electroporation <ol style=";text-align:right;direction:rtl"><li style=";text-align:right;direction:rtl"> הצלחת הכנס לתוך תא מודול את הכוח של מערכת Pulser electroporation MXcell ג&#39;ין. </li><li style=";text-align:right;direction:rtl"> פיפטה 150 תא תערובת μL או חיץ לתוך בארות צלחת electroporation 96-היטב. </li><li style=";text-align:right;direction:rtl"> שים צלחת בתא הצלחת הדופק. </li><li style=";text-align:right;direction:rtl"> הסר את צלחת מ קאמרית. </li><li style=";text-align:right;direction:rtl"> מערבבים היטב על ידי תוכן pipetting למעלה ולמטה גם כל אחד. </li><li style=";text-align:right;direction:rtl"> העברת התאים מבאר כל למאגר מראש התחמם ב 12 גם הצלחות. </li><li style=";text-align:right;direction:rtl"> הקש צלחת להפיץ תאים ושמתי אותו בחממה. </li><li style=";text-align:right;direction:rtl"> בואו תאים להתאושש במשך 24 שעות. </li></ol> קובט ההתקנה electroporation <ol start="9" style=";text-align:right;direction:rtl"><li style=";text-align:right;direction:rtl"> נתק קאמרית צלחת ממודול את כוחה של מערכת Pulser MXcell electroporation ג&#39;ין וחבר ב ShockPod ™ קובט קאמרית. </li><li style=";text-align:right;direction:rtl"> פיפטה 600 μL ההשעיה התא לתוך הפער קובט 0.4 ס&quot;מ electroporation. </li><li style=";text-align:right;direction:rtl"> שים קובט בתא ShockPod ולספק הדופק חשמלי. </li><li style=";text-align:right;direction:rtl"> הסר קובט מבית הבליעה. </li><li style=";text-align:right;direction:rtl"> מערבבים את תוכן קובט ידי pipetting למעלה ולמטה קובט. </li><li style=";text-align:right;direction:rtl"> העברת התאים מבאר כל למאגר מראש התחמם ב 12 גם הצלחות. </li><li style=";text-align:right;direction:rtl"> הקש צלחת להפיץ תאים ושמתי אותו בחממה. </li><li style=";text-align:right;direction:rtl"> בואו התאים להתאושש במשך 24 שעות. </li></ol> 3) נציג תוצאות לאחר transfecting התאים ומאפשר להם להחלים, לנתח את יעילות transfection איכותית, באמצעות מיקרוסקופ epifluorescent ו כמותית, באמצעות cytometry הזרימה. <img src="/files/ftp_upload/1662/1662fig1.jpg" alt="איור 1" /> באיור 1. תאים שעברו electroporated בהצלחה וכעת הם המבטאים את הגן GFP מופיעים תחת מיקרוסקופ epifluorescent. <img src="/files/ftp_upload/1662/1662fig2.jpg" alt="איור 2" /> איור 2. צופה התאים תחת לעומת השלב מאפשרת ויזואליזציה של תאים הן transfected ו untransfected. אלה הם תאים שנחשפו את הדופק הנמוך ביותר electroporation המתח 200V. התאים ומחוברות בעיקר בשל צפיפות התאים גבוהה. <img src="/files/ftp_upload/1662/1662fig3.jpg" alt="איור 3" /> איור 3. אותו שדה הראייה תחת epifluorescence מראה מספר התאים מביעים את סמן ה-GFP, אבל אלה הם רק אחוז קטן של תאים גלויים בתמונה הקודמת. <img src="/files/ftp_upload/1662/1662fig4.jpg" alt="איור 4" /> איור 4. בשלב 250V, המספר הכולל של תאים חיים ראה תחת בניגוד שלב ירידות קלות. <img src="/files/ftp_upload/1662/1662fig5.jpg" alt="איור 5" /> איור 5. תחת epifluorescence, אפשר לראות כי מספר התאים GFP להביע גדל. <img src="/files/ftp_upload/1662/1662fig6.jpg" alt="איור 6" /> איור 6. במתח הגבוה ביותר מיושם, 375V, ישנם תאים חיים פחות גלוי. <img src="/files/ftp_upload/1662/1662fig7.jpg" alt="איור 7" /> איור 7. עם זאת, אחוז גדול של התאים הנותרים מביעים GFP. באיזה מצב הוא אופטימלי תלוי בתכנון הניסוי. בניסויים מסוימים את המספר הגדול ביותר של תאים transfected יכול להיות אופטימלי, בניסויים אחרים transfection האחוז הגבוה ביותר עשוי להיות הטוב ביותר. אנו מעוניינים באחוז התאים GFP חיובית בתנאי אחד ואיך באחוזים משתנים עם הגיל התאים. Cytometry זרימת יכולים לספק מידע כמותי על תוצאות transfection תחת כל התנאים electroporation שונים. <img src="/files/ftp_upload/1662/1662fig8.jpg" alt="איור 8" /> איור 8. כאן את אחוז התאים ה-GFP חיובי במעבר 5 תאים תחת כל אחד מ -12 מצבים electroporation מוצגים. אחוז transfection המרבי היה כ -80% מתחת הדופק הגבוה מתח מעריכי ריקבון, מצב 6, ו -70% תחת הדופק החזק גל מרובע נבדק, מצבו 12. <img src="/files/ftp_upload/1662/1662fig9.jpg" alt="איור 9" /> איור 9. תאים עם עבר 9 פעמים לפני electroporation, את הדפוס הכללי של אחוז transfection כמעט זהה, אך עם ירידה קלה מאוד את אחוזי transfection. <img src="/files/ftp_upload/1662/1662fig10.jpg" alt="איור 10" /> איור 10. המוצג כאן הם אחוז התאים ה-GFP בקטע 13 תאים אשר מראים ירידה ניכרת באחוז transfection יחסית התאים צעירים יותר. האחוזים הגבוהים ביותר היו transfection כמחצית מה הושג עם תאים צעירים להפגין את החשיבות של שימוש בתאים בריאים מיד לאחר הבידוד ככל האפשר. <table border="1" style=";text-align:right;direction:rtl"><tbody><tr><td colspan="3"> Electroporation תנאי שימוש בתאי MEF transfecting באמצעות Pulser ג&#39;ין MXcell </td></tr><tr><td> מצב (06/01) Decay פולסים מעריכי, כל עם 350 UF, 1000ohm </td><td> מתח (V) </td><td></td></tr><tr><td> 1 </td><td> 200 </td><td></td></tr><tr><td> 2 </td><td> 250 </td><td></td></tr><tr><td> 3 </td><td> 300 </td><td></td></tr><tr><td> 4 </td><td> 326 </td><td></td></tr><tr><td> 5 </td><td> 350 </td><td></td></tr><tr><td> 6 </td><td> 376 </td><td></td></tr><tr><td> מצב (12/07) כיכר פולסים Wave, כל עם UF 2000, 1000 אוהם, ו 1 הדופק </td><td> מתח (V) </td><td> Pulse Duration (ms) </td></tr><tr><td> 7 </td><td> 200 </td><td> 10 </td></tr><tr><td> 8 </td><td> 250 </td><td> 10 </td></tr><tr><td> 9 </td><td> 300 </td><td> 10 </td></tr><tr><td> 10 </td><td> 200 </td><td> 20 </td></tr><tr><td> 11 </td><td> 250 </td><td> 20 </td></tr><tr><td> 12 </td><td> 300 </td><td> 20 </td></tr></tbody></table>

המחברים הם מועסקים על ידי Bio-Rad Laboratories המייצרת ריאגנטים מכשיר שימוש במאמר זה

מאמר זה וידאו מדגים כיצד להשתמש במערכת electroporation MXcell לזהות בקלות electroporation תנאים אופטימליים MEFs או אחר שורות תאים ראשוניים. הפורמט 96-היטב צלחת מאפשר רבים משכפל של תנאי הניסוי או אופטימיזציה להתבצע בו זמנית, אשר יכול לבטל את הצורך בניסויים נפרדים רבים. בעת ביצוע הליך זה, יש לזכור להשתמש בתאים בריאים בהקדם לאחר הבידוד ככל האפשר להשתמש התנאים electroporation כי הם מתאימים למאגר electroporation.

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<td>Gene Pulser&reg; Electroporation Buffer</td>
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<td>&nbsp;</td>
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<td>Gene Pulser MXcell&trade; Electroporation System</td>
<td>&nbsp;</td>
<td>Bio-Rad Laboratories, Inc.</td>
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<td>Gene Pulser MXcell&trade; ShockPod&trade; Cuvette Chamber</td>
<td>&nbsp;</td>
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<td>165-2673</td>
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<td>Gene Pulser MXcell&trade; Electroporation System With ShockPod&trade; Cuvette Chamber</td>
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using the gene pulser mxcell electroporation system to transfect primary cells with high efficiency

זה הופך ברור יותר ויותר כי electroporation היא הדרך היעילה ביותר להציג את ה-DNA או פלסמיד siRNA לתוך תאים ראשוניים. Pulser הגן מערכת MXcell electroporation וג&#39;ין Pulser electroporation חיץ (Bio-Rad) פותחו במיוחד בקלות transfect חומצות גרעין לתאי יונקים קשות transfect תאים, כגון תאים ראשוניים גזע. אנו מדגימים כיצד לבצע ניסוי פשוט לזהות במהירות את התנאים electroporation הטוב ביותר. נדגים איך לנהל מספר דוגמאות באמצעות מגוון של תנאים electroporation כך ניסוי ניתן לבצע באותו זמן כמו אופטימיזציה מבוצעת. אנו גם להראות כיצד תנאים אופטימליים מזוהה באמצעות 96-היטב צלחות electroporation ניתן להשתמש cuvettes electroporation סטנדרטי, הקלת לעבור צלחות electroporation כדי cuvettes electroporation תוך שמירה על יעילות electroporation אותו. בסרטון, אנו ידונו גם כמה גורמי מפתח שיכולים להוביל להצלחה או כישלון של ניסויים electroporation.

Watch this Scientific Journal Video about Using the Gene Pulser MXcell Electroporation System to Transfect Primary Cells with High Efficiency at JoVE.com

Using the Gene Pulser MXcell Electroporation System to Transfect Primary Cells with High Efficiency

הליך זה מראה כיצד להשתמש ג&#39;ין Pulser מערכת MXcell electroporation במהירות ובקלות לזהות את התנאים הטובים ביותר עבור electroporation fibroblasts העכבר עובריים (MEFs) או תאים ראשוניים אחרים. שיקולים לפתרון בעיות הם דנו גם וידאו המשויכת.

שימוש ג&#39;ין Pulser מערכת MXcell electroporation כדי Transfect תאים ראשוניים עם יעילות גבוהה

It is becoming increasingly apparent that electroporation is the most effective way to introduce plasmid DNA or siRNA into primary cells. The Gene Pulser ...

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23.9K Views.  Bio-Rad Laboratories, Inc.. הליך זה מראה כיצד להשתמש ג'ין Pulser מערכת MXcell electroporation במהירות ובקלות לזהות את התנאים הטובים ביותר עבור electroporation fibroblasts העכבר עובריים (MEFs) או תאים ראשוניים אחרים. שיקולים לפתרון בעיות הם דנו גם וידאו המשויכת.

Video: Using the Gene Pulser MXcell Electroporation System to Transfect Primary Cells with High Efficiency

The Preparation of Primary Hematopoietic Cell Cultures From Murine Bone Marrow for Electroporation

It is becoming increasingly apparent that electroporation is the most effective way to introduce plasmid DNA or siRNA into primary cells. The Gene Pulser MXcell  electroporation system and Gene Pulser  electroporation buffer were specifically developed to transfect nucleic acids into mammalian cells and difficult-to-transfect cells, such as primary and stem cells.This video demonstrates how to establish primary hematopoietic cell cultures from murine bone marrow, and then prepare them for electroporation in the MXcell system. We begin by isolating femur and tibia. Bone marrow from both femur and tibia are then harvested and cultures are established. Cultured bone marrow cells are then transfected and analyzed.

This procedure describes how to establish primary hematopoietic cell cultures from murine bone marrow and is followed by transfection using the Gene Pulser MXCell electroporation system.

הכנת ראשי בתרביות תאים hematopoietic ממח העצם Murine עבור electroporation

In utero and ex vivo Electroporation for Gene Expression in Mouse Retinal Ganglion Cells

The retina and its sole output neuron, the retinal ganglion cell (RGC), comprise an excellent model in which to examine biological questions such as cell differentiation, axon guidance, retinotopic organization and synapse formation[1]. One drawback is the inability to efficiently and reliably manipulate gene expression in RGCs in vivo, especially in the otherwise accessible murine visual pathways. Transgenic mice can be used to manipulate gene expression, but this approach is often expensive, time consuming, and can produce unwanted side effects. In chick, in ovo electroporation is used to manipulate gene expression in RGCs for examining retina and RGC development. Although similar electroporation techniques have been developed in neonatal mouse pups[2], adult rats[3], and embryonic murine retinae in vitro[4], none of these strategies allow full characterization of RGC development and axon projections in vivo. To this end, we have developed two applications of electroporation, one in utero and the other ex vivo, to specifically target embryonic murine RGCs[5, 6]. 
With in utero retinal electroporation, we can misexpress or downregulate specific genes in RGCs and follow their axon projections through the visual pathways in vivo, allowing examination of guidance decisions at intermediate targets, such as the optic chiasm, or at target regions, such as the lateral geniculate nucleus. Perturbing gene expression in a subset of RGCs in an otherwise wild-type background facilitates an understanding of gene function throughout the retinal pathway. Additionally, we have developed a companion technique for analyzing RGC axon growth in vitro. We electroporate embryonic heads ex vivo, collect and incubate the whole retina, then prepare explants from these retinae several days later. Retinal explants can be used in a variety of in vitro assays in order to examine the response of electroporated RGC axons to guidance cues or other factors. In sum, this set of techniques enhances our ability to misexpress or downregulate genes in RGCs and should greatly aid studies examining RGC development and axon projections.

In utero and ex vivo Electroporation for Gene Expression in Mouse Retinal Ganglion Cells

Here we present two techniques for manipulating gene expression in murine retinal ganglion cells (RGCs) by in utero and ex vivo electroporation. These techniques enable one to examine how alterations in gene expression affect RGC development, axon guidance, and functional properties.

ב electroporation ברחם לשעבר vivo על ביטוי גנים בתאים עכבר גנגליון רשתית

The retina and its sole output neuron, the retinal ganglion cell (RGC), comprise an excellent model in which to examine biological questions such as cell ...

Primary Culture and Plasmid Electroporation of the Murine Organ of Corti. 

In all mammals, the sensory epithelium for audition is located along the spiraling organ of Corti that resides within the conch shaped cochlea of the inner ear (fig 1). Hair cells in the developing cochlea, which are the mechanosensory cells of the auditory system, are aligned in one row of inner hair cells and three (in the base and mid-turns) to four (in the apical turn) rows of outer hair cells that span the length of the organ of Corti. Hair cells transduce sound-induced mechanical vibrations of the basilar membrane into neural impulses that the brain can interpret. Most cases of sensorineural hearing loss are caused by death or dysfunction of cochlear hair cells.
An increasingly essential tool in auditory research is the isolation and in vitro culture of the organ explant 1,2,9. Once isolated, the explants may be utilized in several ways to provide information regarding normative, anomalous, or therapeutic physiology. Gene expression, stereocilia motility, cell and molecular biology, as well as biological approaches for hair cell regeneration are examples of experimental applications of organ of Corti explants.
This protocol describes a method for the isolation and culture of the organ of Corti from neonatal mice. The accompanying video includes stepwise directions for the isolation of the temporal bone from mouse pups, and subsequent isolation of the cochlea, spiral ligament, and organ of Corti. Once isolated, the sensory epithelium can be plated and cultured in vitro in its entirety, or as a further dissected micro-isolate that lacks the spiral limbus and spiral ganglion neurons. Using this method, primary explants can be maintained for 7-10 days. As an example of the utility of this procedure, organ of Corti explants will be electroporated with an exogenous DsRed reporter gene. This method provides an improvement over other published methods because it provides reproducible, unambiguous, and stepwise directions for the isolation, microdissection, and primary culture of the organ of Corti.

Primary Culture and Plasmid Electroporation of the Murine Organ of Corti.

This procedure describes a method for the isolation and culture of the murine organ of Corti with or without the spiral limbus and spiral ganglion neurons. We also demonstrate a method for the expression of an exogenous reporter gene in the organ of Corti explant by electroporation.

תרבות ראשיים electroporation פלסמיד של האיבר Murine של קורטי.

In all mammals, the sensory epithelium for audition is located along the spiraling organ of Corti that resides within the conch shaped cochlea of the ...

Using an Automated Cell Counter to Simplify Gene Expression Studies: siRNA Knockdown of IL-4 Dependent Gene Expression in Namalwa Cells

The use of siRNA mediated gene knockdown is continuing to be an important tool in studies of gene expression.  siRNA studies are being conducted not only to study the effects of downregulating single genes, but also to interrogate signaling pathways and other complex interaction networks.  These pathway analyses require both the use of relevant cellular models and methods that cause less perturbation to the cellular physiology.  Electroporation is increasingly being used as an effective way to introduce siRNA and other nucleic acids into difficult to transfect cell lines and primary cells without altering the signaling pathway under investigation. There are multiple critical steps to a successful siRNA experiment, and there are ways to simplify the work while improving the data quality at several experimental stages.  To help you get started with your siRNA mediated gene knockdown project, we will demonstrate how to perform a pathway study complete from collecting and counting the cells prior to electroporation through post transfection real-time PCR gene expression analysis.  The following study investigates the role of the transcriptional activator STAT6 in IL-4 dependent gene expression of CCL17 in a Burkitt lymphoma cell line (Namalwa).  The techniques demonstrated are useful for a wide range of siRNA-based experiments on both adherent and suspension cells.  We will also show how to streamline cell counting with the TC10 automated cell counter, how to electroporate multiple samples simultaneously using the MXcell electroporation system, and how to simultaneously assess RNA quality and quantity with the Experion automated electrophoresis system.

This procedure describes a quick and easy workflow to introduce siRNA into difficult to transfect cell lines and follow gene expression by real-time PCR. Use of an automated cell counter, multi-well electroporation plate, and automated electrophoresis station provide quick and reliable results without the need for expensive robotic handling.

שימוש מונה תא אוטומטי כדי לפשט את הביטוי מחקרים ג&#39;ין: siRNA מציאה הביטוי IL 4-Gene תלויים תאים Namalwa

The use of siRNA mediated gene knockdown is continuing to be an important tool in studies of gene expression.  siRNA studies are being conducted not only ...

Quantification of dsDNA using the Hitachi F-7000 Fluorescence Spectrophotometer and PicoGreen Dye

Quantification of DNA, especially in small concentrations, is an important task with a wide range of biological applications including standard molecular biology assays such as synthesis and purification of DNA, diagnostic applications such as quantification of DNA amplification products, and detection of DNA molecules in drug preparations. During this video we will demonstrate the capability of the Hitachi F-7000 Fluorescence Spectrophotometer equipped with a Micro Plate Reader accessory to perform dsDNA quantification using Molecular Probes Quant-it PicoGreen dye reagent kit.
The F-7000 Fluorescence Spectrophotometer offers high sensitivity and high speed measurements. It is a highly flexible system capable of measuring fluorescence, luminescence, and phosphorescence. Several measuring modes are available, including wavelength scan, time scan, photometry and 3-D scan measurement. The spectrophotometer has sensitivity in the range of 50 picomoles of fluorescein when using a 300 &#956;L sample volume in the microplate, and is capable of measuring scan speeds of 60,000 nm/minute. It also has a wide dynamic range of up to 5 orders of magnitude which allows for the use of calibration curves over a wide range of concentrations. The optical system uses all reflective optics for maximum energy and sensitivity. The standard wavelength range is 200 to 750 nm, and can be extended to 900 nm when using one of the optional near infrared photomultipliers. The system allows optional temperature control for the plate reader from 5 to 60 degrees Celsius using an optional external temperature controlled liquid circulator. The microplate reader allows for the use of 96 well microplates, and the measuring speed for 96 wells is less than 60 seconds when using the kinetics mode.
Software controls for the F-7000 and Microplate Reader are also highly flexible. Samples may be set in either column or row formats, and any combination of wells may be chosen for sample measurements. This allows for optimal utilization of the microplate. Additionally, the software allows importing micro plate sample configurations created in Excel and saved in comma separated values, or "csv" format. Microplate measuring configurations can be saved and recalled by the software for convenience and increased productivity. Data results can be output to a standard report, to Excel, or to an optional Report Generator Program.

Demonstration of quantification of dsDNA using Molecular Probes PicoGreen dye and Hitachi F-7000 Fluorescence Spectrophotometer equipped with a microplate reader accessory.

כימות dsDNA באמצעות ה-F-7000 Hitachi Fluorescence ספקטרופוטומטר ו PicoGreen דיי

Quantification of DNA, especially in small concentrations, is an important task with a wide range of biological applications including standard molecular ...

siRNA Screening to Identify Ubiquitin and Ubiquitin-like System Regulators of Biological Pathways in Cultured Mammalian Cells

Post-translational modification of proteins with ubiquitin and ubiquitin-like molecules (UBLs) is emerging as a dynamic cellular signaling network that regulates diverse biological pathways including the hypoxia response, proteostasis, the DNA damage response and transcription.&#160; To better understand how UBLs regulate pathways relevant to human disease, we have compiled a human siRNA &#8220;ubiquitome&#8221; library consisting of 1,186 siRNA duplex pools targeting all known and predicted components of UBL system pathways. This library can be screened against a range of cell lines expressing reporters of diverse biological pathways to determine which UBL components act as positive or negative regulators of the pathway in question.&#160; Here, we describe a protocol utilizing this library to identify ubiquitome-regulators of the HIF1A-mediated cellular response to hypoxia using a transcription-based luciferase reporter.&#160; An initial assay development stage is performed to establish suitable screening parameters of the cell line before performing the screen in three stages: primary, secondary and tertiary/deconvolution screening. &#160;The use of targeted over whole genome siRNA libraries is becoming increasingly popular as it offers the advantage of reporting only on members of the pathway with which the investigators are most interested.&#160; Despite inherent limitations of siRNA screening, in particular false-positives caused by siRNA off-target effects, the identification of genuine novel regulators of the pathways in question outweigh these shortcomings, which can be overcome by performing a series of carefully undertaken control experiments.

Here, we describe a methodology to perform a targeted siRNA &#8220;ubiquitome&#8221; screen to identify novel ubiquitin and ubiquitin-like regulators of the HIF1A-mediated cellular response to hypoxia.&#160; This can be adapted to any biological pathway where a robust read out of reporter activity is available.

הקרנת siRNA לזיהוי יוביקוויטין ורגולטורים מערכת דמויות יוביקוויטין של מסלולים ביולוגיים בתאי יונקים בתרבית

Post-translational modification of proteins with ubiquitin and ubiquitin-like molecules (UBLs) is emerging as a dynamic cellular signaling network that ...

Reverse Genetic Morpholino Approach Using Cardiac Ventricular Injection to Transfect Multiple Difficult-to-target Tissues in the Zebrafish Larva

The zebrafish is an important model to understand the cell and molecular biology of organ and appendage regeneration. However, molecular strategies to employ reverse genetics have not yet been adequately developed to assess gene function in regeneration or tissue homeostasis during larval stages after zebrafish embryogenesis, and several tissues within the zebrafish larva are difficult to target. Intraventricular injections of gene-specific morpholinos offer an alternative method for the current inability to genomically target zebrafish genes in a temporally controlled manner at these stages. This method allows for complete dispersion and subsequent incorporation of the morpholino into various tissues throughout the body, including structures that were formerly impossible to reach such as those in the larval caudal fin, a structure often used to noninvasively research tissue regeneration. Several genes activated during larval finfold regeneration are also present in regenerating adult vertebrate tissues, so the larva is a useful model to understand regeneration in adults. This morpholino dispersion method allows for the quick and easy identification of genes required for the regeneration of larval tissues as well as other physiological phenomena regulating tissue homeostasis after embryogenesis. Therefore, this delivery method provides a currently needed strategy for temporal control to the evaluation of gene function after embryogenesis.&#160;

An adaptable reverse genetic method for zebrafish to assess gene function during later stages of development and physiological homeostasis such as tissue regeneration using intraventricular injections of gene-specific morpholinos.

הפוך גישת morpholino גנטית באמצעות הזרקת לב חדרית לtransfect רקמות קשה ליעד מרובים בזחל דג הזברה

The zebrafish is an important model to understand the cell and molecular biology of organ and appendage regeneration. However, molecular strategies to ...

High Efficiency Differentiation of Human Pluripotent Stem Cells to Cardiomyocytes and Characterization by Flow Cytometry

There is an urgent need to develop approaches for repairing the damaged heart, discovering new therapeutic drugs that do not have toxic effects on the heart, and improving strategies to accurately model heart disease. The potential of exploiting human induced pluripotent stem cell (hiPSC) technology to generate cardiac muscle &#8220;in a dish&#8221; for these applications continues to generate high enthusiasm. In recent years, the ability to efficiently generate cardiomyogenic cells from human pluripotent stem cells (hPSCs) has greatly improved, offering us new opportunities to model very early stages of human cardiac development not otherwise accessible. In contrast to many previous methods, the cardiomyocyte differentiation protocol described here does not require cell aggregation or the addition of Activin A or BMP4 and robustly generates cultures of cells that are highly positive for cardiac troponin I and T (TNNI3, TNNT2), iroquois-class homeodomain protein IRX-4 (IRX4), myosin regulatory light chain 2, ventricular/cardiac muscle isoform (MLC2v) and myosin regulatory light chain 2, atrial isoform (MLC2a) by day 10 across all human embryonic stem cell (hESC) and hiPSC lines tested to date. Cells can be passaged and maintained for more than 90 days in culture. The strategy is technically simple to implement and cost-effective. Characterization of cardiomyocytes derived from pluripotent cells often includes the analysis of reference markers, both at the mRNA and protein level. For protein analysis, flow cytometry is a powerful analytical tool for assessing quality of cells in culture and determining subpopulation homogeneity. However, technical variation in sample preparation can significantly affect quality of flow cytometry data. Thus, standardization of staining protocols should facilitate comparisons among various differentiation strategies. Accordingly, optimized staining protocols for the analysis of IRX4, MLC2v, MLC2a, TNNI3, and TNNT2 by flow cytometry are described.

The article describes the detailed methodology to efficiently differentiate human pluripotent stem cells into cardiomyocytes by selectively modulating the Wnt pathway, followed by flow cytometry analysis of reference markers to assess homogeneity and identity of the population.

בידול יעילות גבוה של תאי גזע pluripotent האדם לשריר לב ואפיון על ידי cytometry הזרימה

There is an urgent need to develop approaches for repairing the damaged heart, discovering new therapeutic drugs that do not have toxic effects on the ...

Transfecting RAW264.7 Cells with a Luciferase Reporter Gene

Transfection of desired genetic materials into cells is an inevitable procedure in biomedical research studies. While numerous methods have been described, certain types of cells are resistant to many of these methods and yield low transfection efficiency1, potentially hindering research in those cell types. In this protocol, we present an optimized transfection procedure to introduce luciferase reporter genes as a plasmid DNA into the RAW264.7 macrophage cell line. Two different types of transfection reagents (lipid-based and polyamine-based) are described, and important notes are given throughout the protocol to ensure that the RAW264.7 cells are minimally altered by the transfection procedure and any experimental data obtained are the direct results of the experimental treatment. While transfection efficiency may not be higher compared to other transfection methods, the described procedure is robust enough for detecting luciferase signal in RAW264.7 without changing the physiological response of the cells to stimuli.

Transfection into the macrophage cell line, RAW264.7, is difficult due to the cell&#8217;s natural response against foreign materials. We described here a gentle yet robust procedure for transfecting luciferase reporter genes into RAW264.7 cells.

Transfecting תאי RAW264.7 עם לוציפראז כתב ג&#39;ין

Transfection of desired genetic materials into cells is an inevitable procedure in biomedical research studies. While numerous methods have been ...

High Content Screening Analysis to Evaluate the Toxicological Effects of Harmful and Potentially Harmful Constituents (HPHC)

Cigarette smoke (CS) is a major risk factor for cardiovascular and lung diseases. Because CS is a complex aerosol containing more than 7,000 chemicals1 it is challenging to assess the contributions of individual constituents to its overall toxicity. Toxicological profiles of individual constituents as well as mixtures can be however established in vitro, by applying high through-put screening tools, which enable the profiling of Harmful and Potentially Harmful Constituents (HPHCs) of tobacco smoke, as defined by the U.S. Food and Drug Administration (FDA).2
For an initial assessment, an impedance-based instrument was used for a real-time, label-free assessment of the compound&#39;s toxicity. The instrument readout relies on cell adhesion, viability and morphology that all together provide an overview of the cell status. A dimensionless parameter, named cell index, is used for quantification. A set of different staining protocols was developed for a fluorescence imaging-based investigation and a HCS platform was used to gain more in-depth information on the kind of cytotoxicity elicited by each HPHC.
Of the 15 constituents tested, only five were selected for HCS-based analysis as they registered a computable LD50 (&#60; 20 mM). These included 1-aminonaphtalene, Arsenic (V), Chromium (VI), Crotonaldehyde and Phenol. Based on their effect in the HCS, 1-aminonaphtalene and Phenol could be identified to induce mitochondrial dysfunction, and, together with Chromium (VI) as genotoxic based on the increased histone H2AX phosphorylation. Crotonaldehyde was identified as an oxidative stress inducer and Arsenic as a stress kinase pathway activator.
This study demonstrates that a combination of impedance-based and HCS technologies provides a robust tool for in vitro assessment of CS constituents.

High Content Screening Analysis to Evaluate the Toxicological Effects of Harmful and Potentially Harmful Constituents HPHC

The objective of the study was to assess the biological impact of 15 cigarette smoke constituents using a combination of an impedance-based real time cell analyzer and a high-content screening (HCS)-based platform for toxicological assessment in vitro. This study provides information on effective doses, toxicity and modes of action of the tested compounds.

ניתוח הקרנת תכולה גבוהה כדי להעריך את ההשפעות טוקסיקולוגי של מזיקים מזיקים מרכיבים (HPHC)

Cigarette smoke (CS) is a major risk factor for cardiovascular and lung diseases. Because CS is a complex aerosol containing more than 7,000 chemicals1 it ...