Department of Biological Sciences
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A genomic regulatory network for development.
Science (New York, N.Y.) Mar, 2002 | Pubmed ID: 11872831
A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo.
Developmental biology Jun, 2002 | Pubmed ID: 12027441
Ecological regulation of development: induction of marine invertebrate metamorphosis.
The International journal of developmental biology , 2002 | Pubmed ID: 12141457
Evolution and developmental expression of nuclear receptor genes in the ascidian Herdmania.
The International journal of developmental biology , 2002 | Pubmed ID: 12141458
Expression of a gene encoding a Gata transcription factor during embryogenesis of the starfish Asterina miniata.
Gene expression patterns : GEP Aug, 2003 | Pubmed ID: 12915304
Expression of AmKrox, a starfish ortholog of a sea urchin transcription factor essential for endomesodermal specification.
Gene expression patterns : GEP Aug, 2003 | Pubmed ID: 12915305
Expression of anterior Hox genes during larval development of the gastropod Haliotis asinina.
Evolution & development Sep-Oct, 2003 | Pubmed ID: 12950629
Expression and function of a starfish Otx ortholog, AmOtx: a conserved role for Otx proteins in endoderm development that predates divergence of the eleutherozoa.
Mechanisms of development Oct, 2003 | Pubmed ID: 14568105
Developmental gene regulatory network architecture across 500 million years of echinoderm evolution.
Proceedings of the National Academy of Sciences of the United States of America Nov, 2003 | Pubmed ID: 14595011
Expression of AmHNF6, a sea star orthologue of a transcription factor with multiple distinct roles in sea urchin development.
Gene expression patterns : GEP Feb, 2005 | Pubmed ID: 15661644
Developmental expression of transcription factor genes in a demosponge: insights into the origin of metazoan multicellularity.
Evolution & development Mar-Apr, 2006 | Pubmed ID: 16509894
Caught in the evolutionary act: precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins.
Developmental biology Dec, 2007 | Pubmed ID: 17956756
Evolutionary plasticity of developmental gene regulatory network architecture.
Proceedings of the National Academy of Sciences of the United States of America Dec, 2007 | Pubmed ID: 18042699
HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models.
BMC bioinformatics , 2009 | Pubmed ID: 19208136
Evolution of gene regulatory network architectures: examples of subcircuit conservation and plasticity between classes of echinoderms.
Biochimica et biophysica acta Apr, 2009 | Pubmed ID: 19284985
A conserved gene regulatory network subcircuit drives different developmental fates in the vegetal pole of highly divergent echinoderm embryos.
Developmental biology Apr, 2010 | Pubmed ID: 19941847
Uncoupling of complex regulatory patterning during evolution of larval development in echinoderms.
BMC biology , 2010 | Pubmed ID: 21118544
RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star.
PloS one , 2011 | Pubmed ID: 22216218
Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms.
EvoDevo , 2012 | Pubmed ID: 22877149
Probabilistic error correction for RNA sequencing.
Nucleic acids research May, 2013 | Pubmed ID: 23558750
Gene regulatory network for neurogenesis in a sea star embryo connects broad neural specification and localized patterning.
Proceedings of the National Academy of Sciences of the United States of America May, 2013 | Pubmed ID: 23650356
Expression of wnt and frizzled genes during early sea star development.
Gene expression patterns : GEP Dec, 2013 | Pubmed ID: 23899422
Developmental gene regulatory network evolution: insights from comparative studies in echinoderms.
Genesis (New York, N.Y. : 2000) Mar, 2014 | Pubmed ID: 24549884
Modular Evolution of DNA-Binding Preference of a Tbrain Transcription Factor Provides a Mechanism for Modifying Gene Regulatory Networks.
Molecular biology and evolution Jul, 2014 | Pubmed ID: 25016582