Environmental Molecular Sciences Laboratory
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Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models.
Molecular systems biology Jul, 2010 | Pubmed ID: 20664636
Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.
Proceedings of the National Academy of Sciences of the United States of America Aug, 2002 | Pubmed ID: 12177431
Evaluation of enzymatic digestion and liquid chromatography-mass spectrometry peptide mapping of the integral membrane protein bacteriorhodopsin.
Electrophoresis Sep, 2002 | Pubmed ID: 12298094
High-efficiency on-line solid-phase extraction coupling to 15-150-microm-i.d. column liquid chromatography for proteomic analysis.
Analytical chemistry Jul, 2003 | Pubmed ID: 14570215
Ultrasensitive proteomics using high-efficiency on-line micro-SPE-nanoLC-nanoESI MS and MS/MS.
Analytical chemistry Jan, 2004 | Pubmed ID: 14697044
Automated 20 kpsi RPLC-MS and MS/MS with chromatographic peak capacities of 1000-1500 and capabilities in proteomics and metabolomics.
Analytical chemistry May, 2005 | Pubmed ID: 15889897
Preparation of 20-microm-i.d. silica-based monolithic columns and their performance for proteomics analyses.
Analytical chemistry Aug, 2005 | Pubmed ID: 16053318
More sensitive and quantitative proteomic measurements using very low flow rate porous silica monolithic LC columns with electrospray ionization-mass spectrometry.
Journal of proteome research May, 2006 | Pubmed ID: 16674098
AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis.
Methods of biochemical analysis , 2006 | Pubmed ID: 16929677
Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics.
Journal of proteome research Nov, 2006 | Pubmed ID: 17081052
Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags.
Analytical chemistry Mar, 2008 | Pubmed ID: 18271604
Mass spectrometry analysis of proteome-wide proteolytic post-translational degradation of proteins.
Analytical chemistry Aug, 2008 | Pubmed ID: 18578501
Application of pressurized solvents for ultrafast trypsin hydrolysis in proteomics: proteomics on the fly.
Journal of proteome research Aug, 2008 | Pubmed ID: 18605748
Rapid sample processing for LC-MS-based quantitative proteomics using high intensity focused ultrasound.
Journal of proteome research Sep, 2008 | Pubmed ID: 18686986
High sensitivity proteomics assisted discovery of a novel operon involved in the assembly of photosystem II, a membrane protein complex.
The Journal of biological chemistry Oct, 2008 | Pubmed ID: 18693241
De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins.
Analytical chemistry Oct, 2008 | Pubmed ID: 18783246
Label-free relative quantitation of prokaryotic proteomes using the accurate mass and time tag approach.
Methods in molecular biology (Clifton, N.J.) , 2009 | Pubmed ID: 19241026
On-line digestion system for protein characterization and proteome analysis.
Analytical chemistry Dec, 2008 | Pubmed ID: 19551971
Evaluation of a high-intensity focused ultrasound-immobilized trypsin digestion and 18O-labeling method for quantitative proteomics.
Analytical chemistry Aug, 2009 | Pubmed ID: 19555078
Proteomic detection of non-annotated protein-coding genes in Pseudomonas fluorescens Pf0-1.
PloS one Dec, 2009 | Pubmed ID: 20041161
Establishing the proteome of normal human cerebrospinal fluid.
PloS one Jun, 2010 | Pubmed ID: 20552007
Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry.
Proteomics Aug, 2010 | Pubmed ID: 20597098
Pressurized pepsin digestion in proteomics: an automatable alternative to trypsin for integrated top-down bottom-up proteomics.
Molecular & cellular proteomics : MCP Feb, 2011 | Pubmed ID: 20627868
Proteomic and physiological responses of Kineococcus radiotolerans to copper.
PloS one Aug, 2010 | Pubmed ID: 20865147
Genome sequence of the deltaproteobacterial strain NaphS2 and analysis of differential gene expression during anaerobic growth on naphthalene.
PloS one Nov, 2010 | Pubmed ID: 21124915
Quantitative phosphoproteomic analysis of soybean root hairs inoculated with Bradyrhizobium japonicum.
Molecular & cellular proteomics : MCP Nov, 2012 | Pubmed ID: 22843990
Multi-omic data integration links deleted in breast cancer 1 (DBC1) degradation to chromatin remodeling in inflammatory response.
Molecular & cellular proteomics : MCP Aug, 2013 | Pubmed ID: 23639857
A method to determine lysine acetylation stoichiometries.
International journal of proteomics , 2014 | Pubmed ID: 25143833
Proteome of Geobacter sulfurreducens in the presence of U(VI).
Microbiology (Reading, England) Dec, 2014 | Pubmed ID: 25273002
Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles.
Frontiers in plant science , 2016 | Pubmed ID: 27200004
Defects in the Expression of Chloroplast Proteins Leads to HO Accumulation and Activation of Cyclic Electron Flow around Photosystem I.
Frontiers in plant science , 2016 | Pubmed ID: 28133462
Reduced Arogenate Dehydratase Expression: Ramifications for Photosynthesis and Metabolism.
Plant physiology 05, 2018 | Pubmed ID: 29523714
Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria.
Proceedings of the National Academy of Sciences of the United States of America May, 2018 | Pubmed ID: 29666229
Spatially Resolved Proteome Profiling of <200 Cells from Tomato Fruit Pericarp by Integrating Laser-Capture Microdissection with Nanodroplet Sample Preparation.
Analytical chemistry Sep, 2018 | Pubmed ID: 30118597
Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom.
Nature communications 10, 2019 | Pubmed ID: 31591397
Top-down mass spectrometry of histone modifications in sorghum reveals potential epigenetic markers for drought acclimation.
Methods (San Diego, Calif.) 12, 2020 | Pubmed ID: 31655121
The Importance of Protein Phosphorylation for Signaling and Metabolism in Response to Diel Light Cycling and Nutrient Availability in a Marine Diatom.
Biology Jul, 2020 | Pubmed ID: 32640597
Endophyte-Promoted Phosphorus Solubilization in .
Frontiers in plant science , 2020 | Pubmed ID: 33193494
Real-Time Mass Spectrometry Measurements of Respiration Rates in Biological Systems.
Journal of the American Society for Mass Spectrometry Mar, 2021 | Pubmed ID: 33258588
Mowei Zhou1,
Shadan H. Abdali1,
David Dilworth2,
Lifeng Liu2,
Benjamin Cole2,
Neha Malhan1,
Amir H. Ahkami1,
Tanya E. Winkler1,
Joy Hollingsworth3,
Julie Sievert3,
Jeff Dahlberg3,
Robert Hutmacher4,5,
Mary Madera6,
Judith A. Owiti6,
Kim K. Hixson1,
Peggy G. Lemaux6,
Christer Jansson1,
Ljiljana Paša-Tolić1
1Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory,
2DOE-Joint Genome Institute, Lawrence Berkeley Laboratory,
3Kearney Agricultural Research and Extension Center, University of California Agriculture and Natural Resources,
4West Side Research and Extension Center, University of California,
5Department of Plant Sciences, University of California, Davis,
6Department of Plant and Microbial Biology, University of California, Berkeley