Ringraziamo il Dr. James Robinson per il suo generoso dono della A32, 17b, 48d, e C11 anticorpi monoclonali. PGT 121 è stato ottenuto attraverso il Programma reagente NIH AIDS, Divisione di AIDS, NIAID, NIH (Cat # 12343). Questo lavoro è stato sostenuto da una Fondazione canadese per l&#39;innovazione programma Leader # 29866, da un esercizio CIHR # 257792, da un FRQS Istituzione di Young Scientist concede # 24639 di AF e da un finanziamento continuo CRCHUM nonché da un CIHR sovvenzione catalizzatore # 126630 AF e MR. AF è il destinatario di un FRSQ Chercheur Boursier Junior 1 borsa di studio # 24639. MV è stato sostenuto da un CIHR Dottorato Research Award # 291485.

1 Giorno 1 - Colture Cellulari <ol><li> Piastra 2 x 10 4 osteosarcoma umano (HOS) cellule per pozzetto in una, 96 pozzetti coltura cellulare opaco adatto per la lettura luminescenza. Utilizzare Dulbecco Modified Eagle Medium (DMEM) supplementato con 10% di siero fetale bovino (FBS) e 100 U / ml di penicillina-streptomicina. Incubare fino al giorno successivo a 37 ° C, 5% di CO 2. </li></ol> 2 Giorno 2 - polietilenimmina (PEI) Transfezione <ol><li> Preparare mix trasfezione in base alle fasi successive. Regolare reagenti e le quantità di DNA secondo il numero di pozzi che devono essere trasfettate con la stessa Env. </li><li> Tubo A: Aggiungi 10 ng plasmide Tat-codifica (ad esempio PTAT-III, 27) e 150 ng Env-plasmide codificante per 5 microlitri DMEM supplementato con 25 HEPES mM. </li><li> Il plasmide Tat-codifica è necessaria solo se si utilizza Tat-dipendente Env-plasmidi codificanti, come pSVIII. </li><li> Tubo B: Aggiungere 450 ng PEI (da un 1mg / ml soluzione) a 5 microlitri DMEM. </li><li> Aggiungere il contenuto di tubo B a tubo A. Mescolare accuratamente con il vortex per 10 secondi e incubare mix trasfezione 10 minuti a temperatura ambiente (22 ° C). </li><li> Aggiungere 10 ml di miscela di trasfezione per pozzetto della piastra a 96 pozzetti. Incubare per 48 ore a 37 ° C, 5% di CO 2. </li></ol> 3 Giorno 4 - ELISA <ol><li> Eseguire tutti gli esperimenti a temperatura ambiente per ridurre al minimo possibile l&#39;endocitosi di ENV / anticorpi complessi. </li><li> Preparare 250 ml di tampone di lavaggio per piastra in uso allo stesso tempo. Lavaggio Buffer è 1x salina tamponata con Tris (TBS) pH 7.5 (50 mM Tris-Cl, pH 7.5, 150 mM NaCl), supplementato con 1 mM MgCl 2 e CaCl 1,8 mm 2. </li><li> Preparare 125 ml di tampone di bloccaggio per piastra con l&#39;aggiunta di latte in polvere scremato 1% e 5 mM Tris pH 8.0 a Washing Buffer. </li><li> Rimuovere i supporti di coltura cellulare e mix trasfezione (surnatante) dalla piastra a 96 pozzetti. </li><li> Aggiungere 100 μ; L di tampone di bloccaggio per pozzetto e incubare 20 minuti a temperatura ambiente. </li><li> Rimuovere il surnatante e aggiungere 50 ml di anticorpi (o siero) per bene, diluito alla concentrazione adeguata nel tampone di bloccaggio. Tipicamente, utilizzare una concentrazione di 1 mg / ml. Incubare 1 ora a temperatura ambiente. </li><li> Lavare 3x con 100 microlitri tampone di bloccaggio e quindi ripetere il lavaggio 3x processo con 100 microlitri di lavaggio tampone. </li><li> Rimuovere il surnatante, aggiungere 100 microlitri tampone di bloccaggio, e incubare 5 minuti a temperatura ambiente. </li><li> Rimuovere il surnatante e aggiungere 50 ml di anticorpo secondario, diluito 1/3000 in tampone di bloccaggio. Variare diluizione anticorpo ottimale in base alle differenze produttore. Incubare 40 minuti a temperatura ambiente. </li><li> Lavare 3x con 100 microlitri tampone di bloccaggio e quindi ripetere il lavaggio 3x processo con 100 microlitri di lavaggio tampone. </li></ol> 4 Acquisizione Dati <ol><li> Rimuovere il surnatante dal piatto e aggiungere 30 microlitri 1x chemiluminescenza (ECL) substrato per pozzetto. </li><li> Acquisire chemsegnale iluminescence per 1 sec / bene su un piatto adatto-reader secondo le istruzioni del produttore. Tempo di lettura può variare in base alle differenze di hardware. </li></ol>

<ol>
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Gli autori dichiarano assenza di conflitti di interesse.

Questo test è ottimizzato per rilevare l&#39;interazione di anticorpi monoclonali specifici da HIV-1 trimeric Env espresso sulla superficie cellulare. Una volta che il protocollo è stato stabilito, può essere utilizzato a medio-elevate produzioni con bassi costi di materiale complessivi e piccole quantità di anticorpi. Dal momento che questo saggio è basato trasfezione-, può essere facilmente adattato per coexpression delle proteine ​​cellulari, come CD4 al fine di studiare i loro effetti sulla Env conformazio...

Umana di tipo 1 del virus dell&#39;immunodeficienza (HIV-1) ingresso, mediato dalle trimeriche glicoproteine ​​dell&#39;involucro virale (ENV) è il primo passo del ciclo infettivo. Essendo l&#39;unico antigene virale esposto presentato alla superficie di virioni, la Env trimero suscita anticorpi neutralizzanti e nonneutralizing. Come tale, esso rappresenta un candidato interessante per la progettazione del vaccino immunogeno. Tuttavia, le prove di vaccinazione con Env in forme solubili o ricombinanti hanno suscitato risposte solo con efficacia minima contro la maggior parte primaria da HIV-1 isolati 1-3. Tuttavia, l&#39;efficacia parziale osservato nel trial vaccino RV144 4 rinnovato interesse per HIV-1 Env come candidato immunogeno. Questo è stato confermato da un recente studio che descrive che gli anticorpi vaccino-suscitato anti-Env sono stati sufficienti a generare un certo grado di protezione contro SIV e HIV sfide 5. Dopo essere sintetizzati nel reticolo endoplasmatico, il glycoprote Envin precursori, gp160, subisce varie modificazioni post-traduzionali che sono fondamentali per la sua capacità di alimentare il processo di fusione virale. Il precursore Env deve piegare correttamente e associato in trimeri prima di essere spaccati nelle sue extra-citoplasmatici gp120 e gp41 subunità transmembrana 6-10, con interazioni non covalenti mantenendo il collegamento gp120-gp41. La macchina cellula infetta è anche responsabile pesantemente glicosilazione Env, che comprende circa il 50% della sua massa totale 11,12. La struttura complessa risultante permette Env di essere conformazione flessibile 13,14, mentre fornisce un metastabilità che è pensato per consentire Env di adattarsi e nascondere alcuni epitopi altamente immunogenico che altrimenti sarebbero esposti 15-19, sottolineando l&#39;importanza di comprendere meglio le diverse conformazioni campionata dal Env trimero nativo. Ad oggi, sono state sviluppate diverse tecniche e con successo utilizzati per studiare Env ch conformazionaleanges. Tuttavia, essi variano nelle loro limitazioni, essendo spesso limitato a specifici contesti Env. Ad esempio, risonanza plasmonica di superficie o immunoprecipitazione con anticorpi monoclonali specifici di conformazione (MAK, MAB), si basano sia su monomeriche molecole solubili o solubilizzati Env che sono noti per essere immunogenetically diverso dal loro forme trimeriche 20,21. Recenti studi suggeriscono anche che la scissione colpisce conformazioni Env conseguente l&#39;esposizione di epitopi principalmente riconosciuti da anticorpi nonneutralizing 14,22,23. Qui si descrive in dettaglio un metodo che permette di determinare facile e veloce della conformazione del-cellularmente espresso Env trimeri 18,24-26. A seguito di trasfezione transiente di Env in una linea di cellule aderenti umano il legame di anticorpi specifici Env-viene rilevato utilizzando una semplice reazione di chemiluminescenza. Questa tecnica può anche essere utilizzato per caratterizzare la preferenza conformazionale di conformazione Depenanticorpi dent. Così, questo saggio fornisce un metodo di rilevazione robusta e altamente flessibile.

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			<td height="21" style="height:21px;width:216px;">HOS cells</td>
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			<td height="42" style="height:42px;width:216px;">Goat Anti-Human IgG, Peroxidase Conjugated</td>
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conformational evaluation of hiv-1 trimeric envelope glycoproteins using a cell-based elisa assay

HIV-1 envelope glycoproteins (Env) mediate viral entry into target cells and are essential to the infectious cycle. Understanding how those glycoproteins are able to fuel the fusion process through their conformational changes could lead to the design of better, more effective immunogens for vaccine strategies. Here we describe a cell-based ELISA assay that allows studying the recognition of trimeric HIV-1 Env by monoclonal antibodies. Following expression of HIV-1 trimeric Env at the surface of transfected cells, conformation specific anti-Env antibodies are incubated with the cells. A horseradish peroxidase-conjugated secondary antibody and a simple chemiluminescence reaction are then used to detect bound antibodies. This system is highly flexible and can detect Env conformational changes induced by soluble CD4 or cellular proteins. It requires minimal amount of material and no highly-specialized equipment or know-how. Thus, this technique can be established for medium to high throughput screening of antigens and antibodies, such as newly-isolated antibodies.

Utilizzando la procedura generale di cui sopra, abbiamo adattato il protocollo per saggiare l&#39;impatto dei CD4 solubile (sCD4) e CD4 cellulare coexpressed sull&#39;esposizione di epitopi CD4i su entrambi wild-type (WT) o mutato Env, come descritto in precedenza 18,24, 25,28. figura 1 rappresenta schematicamente la procedura generale e l&#39;esposizione di epitopi CD4i seguito di trattamento con sCD4 o da coexpression di CD4 cellulare 18. Nella figura 2, abbiamo ...

Watch this Scientific Journal Video about Conformational Evaluation of HIV-1 Trimeric Envelope Glycoproteins Using a Cell-based ELISA Assay at JoVE.com

Conformational Evaluation of HIV-1 Trimeric Envelope Glycoproteins Using a Cell-based ELISA Assay

Understanding viral surface antigens conformations is required to evaluate antibody neutralization and guide the design of effective vaccine immunogens. Here we describe a cell-based ELISA assay that allows the study of the recognition of trimeric HIV-1 Env expressed at the surface of transfected cells by specific anti-Env antibodies.

Valutazione conformazionale di HIV-1 trimeric busta glicoproteine ​​Utilizzando una base di Cell-ELISA Saggio

HIV-1 envelope glycoproteins (Env) mediate viral entry into target cells and are essential to the infectious cycle. Understanding how those glycoproteins ...

conformational-evaluation-hiv-1-trimeric-envelope-glycoproteins-using

Research

JoVE Journal

Immunology and Infection

14.3K Views.  Université de Montréal. Understanding viral surface antigens conformations is required to evaluate antibody neutralization and guide the design of effective vaccine immunogens. Here we describe a cell-based ELISA assay that allows the study of the recognition of trimeric HIV-1 Env expressed at the surface of transfected cells by specific anti-Env antibodies.

Video: Conformational Evaluation of HIV-1 Trimeric Envelope Glycoproteins Using a Cell-based ELISA Assay

Genotypic Inference of HIV-1 Tropism Using Population-based Sequencing of V3

Background: Prior to receiving a drug from CCR5-antagonist class in HIV therapy, a patient must undergo an HIV tropism test to confirm that his or her viral population uses the CCR5 coreceptor for cellular entry, and not an alternative coreceptor. One approach to tropism testing is to examine the sequence of the V3 region of the HIV envelope, which interacts with the coreceptor.
Methods: Viral RNA is extracted from blood plasma. The V3 region is amplified in triplicate with nested reverse transcriptase-PCR. The amplifications are then sequenced and analyzed using the software, RE_Call. Sequences are then submitted to a bioinformatic algorithm such as geno2pheno to infer viral tropism from the V3 region. Sequences are inferred to be non-R5 if their geno2pheno false positive rate falls below 5.75%. If any one of the three sequences from a sample is inferred to be non-R5, the patient is unlikely to respond to a CCR5-antagonist.

HIV tropism can be inferred from the V3 region of the viral envelope. V3 is PCR amplified in triplicate using nested RT-PCR, sequenced, and interpreted using bioinformatic software. Samples with with 1 or more sequence(s) with low g2P scores are classified as non-R5 virus.

Inferenza genotipica del virus HIV-1 Tropismo utilizzo basati sulla popolazione sequenziamento del V3

Background: Prior to receiving a drug from CCR5-antagonist class in HIV therapy, a patient must undergo an HIV tropism test to confirm that his or her ...

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Immunologia e infezioni

Determination of Molecular Structures of HIV Envelope Glycoproteins using Cryo-Electron Tomography and Automated Sub-tomogram Averaging

Since its discovery nearly 30 years ago, more than 60 million people have been infected with the human immunodeficiency virus (HIV) <a href="http://www.usaid.gov">(www.usaid.gov)</a>. The virus infects and destroys CD4+ T-cells thereby crippling the immune system, and causing an acquired immunodeficiency syndrome (AIDS) 2. Infection begins when the HIV Envelope glycoprotein "spike" makes contact with the CD4 receptor on the surface of the CD4+ T-cell. This interaction induces a conformational change in the spike, which promotes interaction with a second cell surface co-receptor 5,9. The significance of these protein interactions in the HIV infection pathway makes them of profound importance in fundamental HIV research, and in the pursuit of an HIV vaccine.
The need to better understand the molecular-scale interactions of HIV cell contact and neutralization motivated the development of a technique to determine the structures of the HIV spike interacting with cell surface receptor proteins and molecules that block infection. Using cryo-electron tomography and 3D image processing, we recently demonstrated the ability to determine such structures on the surface of native virus, at &tilde;20 &Aring; resolution 9,14. This approach is not limited to resolving HIV Envelope structures, and can be extended to other viral membrane proteins and proteins reconstituted on a liposome. In this protocol, we describe how to obtain structures of HIV envelope glycoproteins starting from purified HIV virions and proceeding stepwise through preparing vitrified samples, collecting, cryo-electron microscopy data, reconstituting and processing 3D data volumes, averaging and classifying 3D protein subvolumes, and interpreting results to produce a protein model. The computational aspects of our approach were adapted into modules that can be accessed and executed remotely using the Biowulf GNU/Linux parallel processing cluster at the NIH <a href="http://biowulf.nih.gov">(http://biowulf.nih.gov)</a>. This remote access, combined with low-cost computer hardware and high-speed network access, has made possible the involvement of researchers and students working from school or home.

The protocol describes a high-throughput approach to determining structures of membrane proteins using cryo-electron tomography and 3D image processing. It covers the details of specimen preparation, data collection, data processing and interpretation, and concludes with the production of a representative target for the approach, the HIV-1 Envelope glycoprotein. These computational procedures are designed in a way that enables researchers and students to work remotely and contribute to data processing and structural analysis.

Determinazione di strutture molecolari di glicoproteine ​​dell&#39;HIV Busta con Cryo-Electron Positron e automatizzato Sub-tomogramma Averaging

Since its discovery nearly 30 years ago, more than 60 million people have been infected with the human immunodeficiency virus (HIV) (www.usaid.gov). The ...

Prediction of HIV-1 Coreceptor Usage (Tropism) by Sequence Analysis using a Genotypic Approach

Maraviroc (MVC) is the first licensed antiretroviral drug from the class of coreceptor antagonists. It binds to the host coreceptor CCR5, which is used by the majority of HIV strains in order to infect the human immune cells (Fig. 1). Other HIV isolates use a different coreceptor, the CXCR4. Which receptor is used, is determined in the virus by the Env protein (Fig. 2). Depending on the coreceptor used, the viruses are classified as R5 or X4, respectively. MVC binds to the CCR5 receptor inhibiting the entry of R5 viruses into the target cell. During the course of disease, X4 viruses may emerge and outgrow the R5 viruses. Determination of coreceptor usage (also called tropism) is therefore mandatory prior to administration of MVC, as demanded by EMA and FDA. 
The studies for MVC efficiency MOTIVATE, MERIT and 1029 have been performed with the Trofile assay from Monogram, San Francisco, U.S.A. This is a high quality assay based on sophisticated recombinant tests. The acceptance for this test for daily routine is rather low outside of the U.S.A., since the European physicians rather tend to work with decentralized expert laboratories, which also provide concomitant resistance testing. These laboratories have undergone several quality assurance evaluations, the last one being presented in 20111.
For several years now, we have performed tropism determinations based on sequence analysis from the HIV env-V3 gene region (V3)2. This region carries enough information to perform a reliable prediction. 
The genotypic determination of coreceptor usage presents advantages such as: shorter turnover time (equivalent to resistance testing), lower costs, possibility to adapt the results to the patients' needs and possibility of analysing clinical samples with very low or even undetectable viral load (VL), particularly since the number of samples analysed with VL&lt;1000 copies/&mu;l roughly increased in the last years (Fig. 3).
The main steps for tropism testing (Fig. 4) demonstrated in this video: 
1. Collection of a blood sample 
 2. Isolation of the HIV RNA from the plasma and/or HIV proviral DNA from blood mononuclear cells 
 3. Amplification of the env region 
 4. Amplification of the V3 region 
 5. Sequence reaction of the V3 amplicon 
 6. Purification of the sequencing samples 
 7. Sequencing the purified samples 
 8. Sequence editing 
 9. Sequencing data interpretation and tropism prediction

Prediction of HIV-1 Coreceptor Usage Tropism by Sequence Analysis using a Genotypic Approach

The prediction of the coreceptor usage of HIV-1 is required for the administration of a new class of antiretroviral drugs, i.e. coreceptor antagonists. It can be performed by sequence analysis of the env gene and subsequent interpretation through an internet based interpretation system (geno2pheno[coreceptor]).

Pronostico di HIV-1 Uso corecettore (tropismo) mediante analisi della sequenza utilizzando un approccio genotipica

Maraviroc (MVC) is the first licensed antiretroviral drug from the class of coreceptor antagonists. It binds to the host coreceptor CCR5, which is used by ...

In vitro Uncoating of HIV-1 Cores

The genome of the retroviruses is encased in a capsid surrounded by a lipid envelope. For lentiviruses, such as HIV-1, the conical capsid shell is composed of CA protein arranged as a lattice of hexagon. The capsid is closed by 7 pentamers at the broad end and 5 at the narrow end of the cone1, 2. Encased in this capsid shell is the viral ribonucleoprotein complex, and together they comprise the core.
Following fusion of the viral membrane with the target cell membrane, the HIV-1 is released into the cytoplasm. The capsid then disassembles releasing free CA in the soluble form3 in a process referred to as uncoating. The intracellular location and timing of HIV-1 uncoating are poorly understood. Single amino-acid substitutions in CA that alter the stability of the capsid also impair the ability of HIV-1 to infect cells4. This indicates that the stability of the capsid is critical for HIV-1 infection.
HIV-1 uncoating has been difficult to study due to lack of availability of sensitive and reliable assays for this process. Here we describe a quantitative method for studying uncoating in vitro using cores isolated from infectious HIV-1 particles. The approach involves isolation of cores by sedimentation of concentrated virions through a layer of detergent and into a linear sucrose gradient, in the cold. To quantify uncoating, the isolated cores are incubated at 37&deg;C for various timed intervals and subsequently pelleted by ultracentrifugation. The extent of uncoating is analyzed by quantifying the fraction of CA in the supernatant. This approach has been employed to analyze effects of viral mutations on HIV-1 capsid stability4, 5, 6. It should also be useful for studying the role of cellular factors in HIV-1 uncoating.

In vitro Uncoating of HIV-1 Cores

Uncoating is an essential step in the early phase of the HIV-1 life cycle and is defined as the disassembly of the capsid shell and the release of the viral ribonucleoprotein complex (vRNP). Here, we demonstrate techniques for isolating intact cores from HIV-1 virions and for quantifying their uncoating in vitro.

In uncoating vitro di HIV-1 Cores

The genome of the retroviruses is encased in a capsid surrounded by a lipid envelope. For lentiviruses, such as HIV-1, the conical capsid shell is ...

Imaging of HIV-1 Envelope-induced Virological Synapse and Signaling on Synthetic Lipid Bilayers

Human immunodeficiency virus type 1 (HIV-1) infection occurs most efficiently via cell to cell transmission2,10,11. This cell to cell transfer between CD4+ T cells involves the formation of a virological synapse (VS), which is an F-actin-dependent cell-cell junction formed upon the engagement of HIV-1 envelope gp120 on the infected cell with CD4 and the chemokine receptor (CKR) CCR5 or CXCR4 on the target cell 8. In addition to gp120 and its receptors, other membrane proteins, particularly the adhesion molecule LFA-1 and its ligands, the ICAM family, play a major role in VS formation and virus transmission as they are present on the surface of virus-infected donor cells and target cells, as well as on the envelope of HIV-1 virions1,4,5,6,7,13. VS formation is also accompanied by intracellular signaling events that are transduced as a result of gp120-engagement of its receptors. Indeed, we have recently showed that CD4+ T cell interaction with gp120 induces recruitment and phosphorylation of signaling molecules associated with the TCR signalosome including Lck, CD3&zeta;, ZAP70, LAT, SLP-76, Itk, and PLC&gamma;15.
In this article, we present a method to visualize supramolecular arrangement and membrane-proximal signaling events taking place during VS formation. We take advantage of the glass-supported planar bi-layer system as a reductionist model to represent the surface of HIV-infected cells bearing the viral envelope gp120 and the cellular adhesion molecule ICAM-1. The protocol describes general procedures for monitoring HIV-1 gp120-induced VS assembly and signal activation events that include i) bi-layer preparation and assembly in a flow cell, ii) injection of cells and immunofluorescence staining to detect intracellular signaling molecules on cells interacting with HIV-1 gp120 and ICAM-1 on bi-layers, iii) image acquisition by TIRF microscopy, and iv) data analysis. This system generates high-resolution images of VS interface beyond that achieved with the conventional cell-cell system as it allows detection of distinct clusters of individual molecular components of VS along with specific signaling molecules recruited to these sub-domains.

This article describes a method to visualize formation of an HIV-1 envelope-induced virological synapse on glass supported planar bilayers by total internal reflection fluorescence (TIRF) microscopy. The method can also be combined with immunofluorescence staining to detect activation and redistribution of signaling molecules that occur during HIV-1 envelope-induced virological synapse formation.

Imaging di HIV-1 Envelope indotta Synapse virologica e segnalazione sui doppi strati lipidici sintetici

Human immunodeficiency virus type 1 (HIV-1) infection occurs most efficiently via cell to cell transmission2,10,11. This cell to cell transfer between ...

Assessing the Innate Sensing of HIV-1 Infected CD4+ T Cells by Plasmacytoid Dendritic Cells Using an Ex vivo Co-culture System.

HIV-1 innate sensing requires direct contact of infected CD4+ T cells with plasmacytoid dendritic cells (pDCs). In order to study this process, the protocols described here use freshly isolated human peripheral blood mononuclear cells (PBMCs) or plasmacytoid dendritic cells (pDCs) to sense infections in either T cell line (MT4) or heterologous primary CD4+ T cells. In order to ensure proper sensing, it is essential that PBMC are isolated immediately after blood collection and that optimal percentage of infected T cells are used. Furthermore, multi-parametric flow cytometric staining can be used to confirm that PBMC samples contain the different cell lineages at physiological ratios. A number of controls can also be included to evaluate viability and functionality of pDCs. These include, the presence of specific surface markers, assessing cellular responses to known agonist of Toll-Like Receptors (TLR) pathways, and confirming a lack of spontaneous type-I interferon (IFN) production. In this system, freshly isolated PBMCs or pDCs are co-cultured with HIV-1 infected cells in 96 well plates for 18-22 hr. Supernatants from these co-cultures are then used to determine the levels of bioactive type-I IFNs by monitoring the activation of the ISGF3 pathway in HEK-Blue IFN-&#945;/&#946; cells. Prior and during co-culture conditions, target cells can be subjected to flow cytometric analysis to determine a number of parameters, including the percentage of infected cells, levels of specific surface markers, and differential killing of infected cells. Although, these protocols were initially developed to follow type-I IFN production, they could potentially be used to study other imuno-modulatory molecules released from pDCs and to gain further insight into the molecular mechanisms governing HIV-1 innate sensing.

Assessing the Innate Sensing of HIV-1 Infected CD4+ T Cells by Plasmacytoid Dendritic Cells Using an Ex vivo Co-culture System.

Unlike cell-free HIV-1 particles, infected CD4+ T cells are effectively sensed by plasmacytoid dendritic cells (pDCs). This manuscript describes a method where peripheral blood mononuclear cells (PBMCs) or isolated pDCs are co-cultured with HIV-1 infected T cells to evaluate innate sensing by pDCs as assessed by release of type-I IFN.

Valutare l&#39;innato rilevamento dell&#39;infezione da HIV-1 CD4 infetti<sup&gt; +</sup&gt; Cellule T dalle cellule dendritiche plasmacitoidi Utilizzando un<em&gt; Ex vivo</em&gt; Sistema di co-coltura.

HIV-1 innate sensing requires direct contact of infected CD4+ T cells with plasmacytoid dendritic cells (pDCs). In order to study this process, the ...

Nucleocapsid Annealing-Mediated Electrophoresis (NAME) Assay Allows the Rapid Identification of HIV-1 Nucleocapsid Inhibitors

RNA or DNA folded in stable tridimensional folding are interesting targets in the development of antitumor or antiviral drugs. In the case of HIV-1, viral proteins involved in the regulation of the virus activity recognize several nucleic acids. The nucleocapsid protein NCp7 (NC) is a key protein regulating several processes during virus replication. NC is in fact a chaperone destabilizing the secondary structures of RNA and DNA and facilitating their annealing. The inactivation of NC is a new approach and an interesting target for anti-HIV therapy. The Nucleocapsid Annealing-Mediated Electrophoresis (NAME) assay was developed to identify molecules able to inhibit the melting and annealing of RNA and DNA folded in thermodynamically stable tridimensional conformations, such as hairpin structures of TAR and cTAR elements of HIV, by the nucleocapsid protein of HIV-1. The new assay employs either the recombinant or the synthetic protein, and oligonucleotides without the need of their previous labeling. The analysis of the results is achieved by standard polyacrylamide gel electrophoresis (PAGE) followed by conventional nucleic acid staining. The protocol reported in this work describes how to perform the NAME assay with the full-length protein or its truncated version lacking the basic N-terminal domain, both competent as nucleic acids chaperones, and how to assess the inhibition of NC chaperone activity by a threading intercalator. Moreover, NAME can be performed in two different modes, useful to obtain indications on the putative mechanism of action of the identified NC inhibitors.

Nucleocapsid Annealing-Mediated Electrophoresis NAME Assay Allows the Rapid Identification of HIV-1 Nucleocapsid Inhibitors

This protocol describes NAME, an assay that allows the rapid identification of molecules able to inhibit in vitro the chaperone activities of HIV-1 nucleocapsid protein.

Nucleocapside Ricottura-Mediated elettroforesi (NAME) Assay permette la rapida identificazione del virus HIV-1 nucleocapside Inibitori

RNA or DNA folded in stable tridimensional folding are interesting targets in the development of antitumor or antiviral drugs. In the case of HIV-1, viral ...

High-throughput Quantitative Real-time RT-PCR Assay for Determining Expression Profiles of Types I and III Interferon Subtypes

Described in this report is a qRT-PCR assay for the analysis of seventeen human IFN subtypes in a 384-well plate format that incorporates highly specific locked nucleic acid (LNA) and molecular beacon (MB) probes, transcript standards, automated multichannel pipetting, and plate drying. Determining expression among the type I interferons (IFN), especially the twelve IFN-&#945; subtypes, is limited by their shared sequence identity; likewise, the sequences of the type III IFN, especially IFN-&#955;2 and -&#955;3, are highly similar. This assay provides a reliable, reproducible, and relatively inexpensive means to analyze the expression of the seventeen interferon subtype transcripts.

This protocol describes a high-throughput qRT-PCR assay for the analysis of type I and III IFN expression signatures. The assay discriminates single base pair differences between the highly similar transcripts of these genes. Through batch assembly and robotic pipetting, the assays are consistent and reproducible.

High-throughput Quantitative Real-time RT-PCR test per la determinazione di espressione Profili di tipo I e III interferone sottotipi

Described in this report is a qRT-PCR assay for the analysis of seventeen human IFN subtypes in a 384-well plate format that incorporates highly specific ...

Isolation of Exosomes from the Plasma of HIV-1 Positive Individuals

Exosomes are small vesicles ranging in size from 30 nm to 100 nm that are released both constitutively and upon stimulation from a variety of cell types. They are found in a number of biological fluids and are known to carry a variety of proteins, lipids, and nucleic acid molecules. Originally thought to be little more than reservoirs for cellular debris, the roles of exosomes regulating biological processes and in diseases are increasingly appreciated.
Several methods have been described for isolating exosomes from cellular culture media and biological fluids. Due to their small size and low density, differential ultracentrifugation and/or ultrafiltration are the most commonly used techniques for exosome isolation. However, plasma of HIV-1 infected individuals contains both exosomes and HIV viral particles, which are similar in size and density. Thus, efficient separation of exosomes from HIV viral particles in human plasma has been a challenge.
To address this limitation, we developed a procedure modified from Cantin et. al., 2008 for purification of exosomes from HIV particles in human plasma. Iodixanol velocity gradients were used to separate exosomes from HIV-1 particles in the plasma of HIV-1 positive individuals. Virus particles were identified by p24 ELISA. Exosomes were identified on the basis of exosome markers acetylcholinesterase (AChE), and the CD9, CD63, and CD45 antigens. Our gradient procedure yielded exosome preparations free of virus particles. The efficient purification of exosomes from human plasma enabled us to examine the content of plasma-derived exosomes and to investigate their immune modulatory potential and other biological functions.

Techniques describing a gradient procedure to separate exosomes from human immunodeficiency virus (HIV) particles are described. This procedure was used to isolate exosomes away from HIV particles in human plasma from HIV-infected individuals. The isolated exosomes were analyzed for cytokine/chemokine content.

Isolamento di esosomi dal plasma di HIV-1 individui positivi

Exosomes are small vesicles ranging in size from 30 nm to 100 nm that are released both constitutively and upon stimulation from a variety of cell types. ...

Evaluation of the Efficacy And Toxicity of RNAs Targeting HIV-1 Production for Use in Gene or Drug Therapy

Small RNA therapies targeting post-integration steps in the HIV-1 replication cycle are among the top candidates for gene therapy and have the potential to be used as drug therapies for HIV-1 infection. Post-integration inhibitors include ribozymes, short hairpin (sh) RNAs, small interfering (si) RNAs, U1 interference (U1i) RNAs and RNA aptamers. Many of these have been identified using transient co-transfection assays with an HIV-1 expression plasmid and some have advanced to clinical trials. In addition to measures of efficacy, small RNAs have been evaluated for their potential to affect the expression of human RNAs, alter cell growth and/or differentiation, and elicit innate immune responses. In the protocols described here, a set of transient transfection assays designed to evaluate the efficacy and toxicity of RNA molecules targeting post-integration steps in the HIV-1 replication cycle are described. We have used these assays to identify new ribozymes and optimize the format of shRNAs and siRNAs targeting HIV-1 RNA. The methods provide a quick set of assays that are useful for screening new anti-HIV-1 RNAs and could be adapted to screen other post-integration inhibitors of HIV-1 replication.

Methods to evaluate the efficacy and toxicity of RNA molecules targeting post-integration steps of the HIV-1 replication cycle are described. These methods are useful for screening new molecules and optimizing the format of existing ones.

Valutazione della efficacia e la tossicità degli RNA targeting HIV-1 Produzione per l&#39;uso in gene terapia farmacologica

Small RNA therapies targeting post-integration steps in the HIV-1 replication cycle are among the top candidates for gene therapy and have the potential ...

Valutazione conformazionale di HIV-1 trimeric busta glicoproteine Utilizzando una base di Cell-ELISA Saggio

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Capitoli in questo video

Inferenza genotipica del virus HIV-1 Tropismo utilizzo basati sulla popolazione sequenziamento del V3

Determinazione di strutture molecolari di glicoproteine dell'HIV Busta con Cryo-Electron Positron e automatizzato Sub-tomogramma Averaging

Pronostico di HIV-1 Uso corecettore (tropismo) mediante analisi della sequenza utilizzando un approccio genotipica

In uncoating vitro di HIV-1 Cores

Imaging di HIV-1 Envelope indotta Synapse virologica e segnalazione sui doppi strati lipidici sintetici

Valutare l'innato rilevamento dell'infezione da HIV-1 CD4 infetti

Nucleocapside Ricottura-Mediated elettroforesi (NAME) Assay permette la rapida identificazione del virus HIV-1 nucleocapside Inibitori

High-throughput Quantitative Real-time RT-PCR test per la determinazione di espressione Profili di tipo I e III interferone sottotipi

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Nucleocapside Ricottura-Mediated elettroforesi (NAME) Assay permette la rapida identificazione del virus HIV-1 nucleocapside Inibitori

High-throughput Quantitative Real-time RT-PCR test per la determinazione di espressione Profili di tipo I e III interferone sottotipi

Isolamento di esosomi dal plasma di HIV-1 individui positivi

Valutazione della efficacia e la tossicità degli RNA targeting HIV-1 Produzione per l'uso in gene terapia farmacologica

Valutazione conformazionale di HIV-1 trimeric busta glicoproteine Utilizzando una base di Cell-ELISA Saggio

Determinazione di strutture molecolari di glicoproteine dell'HIV Busta con Cryo-Electron Positron e automatizzato Sub-tomogramma Averaging