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Tom J. Battin

Stream Biofilm and Ecosystem Research Laboratory,
School of Architecture,
Civil and Environmental Engineering,
Stream Biofilm and Ecosystem Research Laboratory, School of Architecture, Civil and Environmental Engineering

Ecole Polytechnique Fédérale de Lausanne

BIOGRAPHY

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PUBLICATIONS

Hydrologic variability affects invertebrate grazing on phototrophic biofilms in stream microcosms.

PloS one , 2013 | Pubmed ID: 23613735

Fluvial network organization imprints on microbial co-occurrence networks.

Proceedings of the National Academy of Sciences of the United States of America Sep, 2014 | Pubmed ID: 25136087

Altitudinal patterns of diversity and functional traits of metabolically active microorganisms in stream biofilms.

The ISME journal Nov, 2015 | Pubmed ID: 25978543

The ecology and biogeochemistry of stream biofilms.

Nature reviews. Microbiology Apr, 2016 | Pubmed ID: 26972916

Attached biofilms and suspended aggregates are distinct microbial lifestyles emanating from differing hydraulics.

Nature microbiology Oct, 2016 | Pubmed ID: 27694939

Glacier shrinkage driving global changes in downstream systems.

Proceedings of the National Academy of Sciences of the United States of America 09, 2017 | Pubmed ID: 28874558

Ecological strategies and metabolic trade-offs of complex environmental biofilms.

NPJ biofilms and microbiomes , 2017 | Pubmed ID: 28955480

Gravel bars are sites of increased CO outgassing in stream corridors.

Scientific reports 10, 2017 | Pubmed ID: 29089508

Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels.

Molecular ecology 07, 2018 | Pubmed ID: 29679511

Environmental heterogeneity promotes spatial resilience of phototrophic biofilms in streambeds.

Biology letters 10, 2018 | Pubmed ID: 30305460

Unraveling the biophysical underpinnings to the success of multispecies biofilms in porous environments.

The ISME journal Jul, 2019 | Pubmed ID: 30833685

INSTITUTIONS

Ecole Polytechnique Fédérale de Lausanne

École Polytechnique Fédérale de Lausanne

JOVE ARTICLES

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales

Anna Depetris¹,

Antoine Wiedmer²,

Michael Wagner³,

Sebastian Schäfer⁴,

Tom J. Battin¹,

Hannes Peter¹

¹Stream Biofilm and Ecosystem Research Laboratory, School of Architecture, Civil and Environmental Engineering, Ecole Polytechnique Fédérale de Lausanne,

²Plateforme technique, School of Architecture, Civil and Environmental Engineering, Ecole Polytechnique Fédérale de Lausanne,

³Water Chemistry and Water Technology, Engler-Bunte-Institut, Karlsruhe Institute of Technology,

⁴, Thorlabs GmbH

Environment

Combining Fluidic Devices with Microscopy and Flow Cytometry to Study Microbial Transport in Porous Media Across Spatial Scales

David Scheidweiler^1,2,

Pietro De Anna²,

Tom J. Battin¹,

Hannes Peter¹

¹Stream Biofilm and Ecosystem Research Laboratory, École Polytechnique Fédérale de Lausanne,

²Institute of Earth Sciences, University of Lausanne, CH-1015

Environment

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Tom J. Battin

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Ecole Polytechnique Fédérale de Lausanne

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales

Combining Fluidic Devices with Microscopy and Flow Cytometry to Study Microbial Transport in Porous Media Across Spatial Scales

Stream Biofilm and Ecosystem Research Laboratory,
School of Architecture,
Civil and Environmental Engineering,
Stream Biofilm and Ecosystem Research Laboratory, School of Architecture, Civil and Environmental Engineering