サンプルの培養を設定し、数字を支援するためのイラストを準備し、クリスReddiとカリフォルニア大学ロサンゼルス校（UCLA）Bhairav​​シャーするためにはIROCデザインでコリ·サンダース氏に感謝します。このプロジェクトの資金は、HHMI（ハワードグラント番号52006944）によって提供されていました。

<ol>
	<li>Barker, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> At the Bench: A Laboratory Navigator. , (1998).</li><li>US Department of Health and Human Services (DHHS). <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Biosafety in Microbiological And Biomedical Laboratories (BMBL). , (2009).</li><li>Dulbecco, R., Vogt, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Some+problems+of+animal+virology+as+studied+by+the+plaque+technique.">Some problems of animal virology as studied by the plaque technique.</a> Cold Spring Harbor Symp. Quant. Biol. 18, 273-279 (1953).</li><li>Fields, B. N., Knipe, D. M., Chanock, R. M., Hirsch, M. S., Melnick, J. L., Monath, T. P., Roizman, B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Fields Virology. 1, (1991).</li><li>Gilbert, R. A., Ouwerkerk, D., Zhang, L. H., Klieve, A. V. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cooperative+Research+Center+for+Beef+Genetic+Technologies.+In+vitro+detection+and+primary+cultivation+of+bacteria+producing+materials+inhibitory+to+ruminal+methanogens.">Cooperative Research Center for Beef Genetic Technologies. In vitro detection and primary cultivation of bacteria producing materials inhibitory to ruminal methanogens.</a> Journal of Microbiological Methods. 80, 217-218 (2010).</li><li>Jett, B. D., Hatter, K. L., Huycke, M. M., Gilmore, M. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Simplified+agar+plate+method+for+quantifying+viable+bacteria.">Simplified agar plate method for quantifying viable bacteria.</a> BioTechniques. 23, 648-650 (1997).</li><li>Karam, J. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Molecular Biology of Bacteriophage T4. , (1994).</li><li>Knipe, D. M., Howley, P. M., Griffin, D. E., Lamb, R. A., Martin, M. A., Roizman, B., Straus, S. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Fundamental Virology. , (2001).</li><li>Lederberg, J., Lederberg, E. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Replica+plating+and+indirect+selection+of+bacterial+mutants.">Replica plating and indirect selection of bacterial mutants.</a> J. Bacteriol. 63, 399-406 (1952).</li><li>Miller, J. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> A Short Course in Bacterial Genetics: A Laboratory Manual and Handbook for Escherichia coli and related bacteria. , (1992).</li><li>Mills, K. V., Gareau, J. R., Garcia, A. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Low-cost+modification+to+the+Copacabana+method+for+spreading+transformation+mixtures.">Low-cost modification to the Copacabana method for spreading transformation mixtures.</a> BioTechniques. 39, 188 (2005).</li><li>Jordan, T., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> RESEARCH: National Genomics Research Initiative Phage Resource Laboratory Manual. , (2008).</li><li>Sambrook, J., Russell, D. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Molecular Cloning - A Laboratory Manual. , (2001).</li><li>Sanders, E. R., Miller, J. H. I. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Microbiologist: A Discovery-based Course in Microbial Ecology and Molecular Evolution. , (2010).</li><li>Slonczewski, J. L., Foster, J. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Microbiology - An Evolving Science. , (2011).</li><li>Teather, R. M., Wood, P. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Use+of+Congo+Red-Polysaccharide+Interactions+in+Enumeration+and+Characterization+of+Cellulolytic+Bacteria+from+the+Bovine+Rumen.">Use of Congo Red-Polysaccharide Interactions in Enumeration and Characterization of Cellulolytic Bacteria from the Bovine Rumen.</a> Applied and Environmental Microbiology. 43, 777-780 (1982).</li><li>Wise, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Preparing Spread Plates Protocols. , (2006).</li><li>Worthington, M., Luo, R. Q., Pelo, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Copacabana+method+for+spreading+E.+coli+and+yeast+colonies.">Copacabana method for spreading E. coli and yeast colonies.</a> BioTechniques. 30, 738-742 (2001).</li></ol>

私は、開示することは何もありません。

培養微生物は無菌操作は、細胞とメディアの操作を通して維持されている必要がありますすべてはめっき法、数が含まれます。 5つの異なる手順は、このプロトコルで説明されました。これらのめっき技術が日常的に細菌やファージを操作するために使用されていますが、彼 ​​らはまた、（一般的に、酵母（例えば、 サッカロミセス·セレビシエ（Saccharomyces cerevisiae）、カンジダ·アルビカンス（Candida albicans）、シゾサッカロミセス·ポンベ ）、藻類などの分子遺伝学で使用され、原生動物、哺乳類培養細胞および真核微生物に適用することができますすなわち、 ボルボックス、クラミドモナス、アメーバ、ゾウリムシ ）、および線虫（すなわち、 線虫Caenorhabditis elegans）。また、研究対象の実験的な目標や生物に応じて、各めっき法の（そして、さらに洗練された）多数のバリエーションがあります。したがって、それは唯一の方法論のようなtを与えられた実験やターゲット微生物のための最も適切な方法を選択しても調整しないようにすることが重要である帽子の実験結果は、適切に調査、質問や問題に対処します。 このプロトコルで説明しためっき技術の最新のアプリケーションのいくつかは、スクリーニングや創薬実験のための高スループットの結果をもたらす技術の進歩を含んでいます。たとえば、ゲノムシークエンシングセンターはE.ある拡散メッキのクローンライブラリの&quot;コパカバーナ方法&quot;を、使用大腸菌細胞は、微生物のゲノム由来のDNA断片を含むプラスミドで形質転換した。大規模なプレート（バイオアッセイトレイと呼ばれる）の数十を一度に用意されているため、自動プレートシェーカーは、トレイのバッチ全体のためにガラスビーズを振るために使用されます。また、インキュベーション後に、これらのプレートからコロニーを選択する際に、ロボットコロニーピッカーは、384ウェルマイクロプレートのLBブロスのための接種物として適切なコロニーから細胞を収集するために使用されています。このハイスループットスクリーニングアッセイ、拡散pの手続きの原則のために後半技術が適用されますが、技術は様々なステップを自動化すると同時に、短い時間枠内で分析される多数のサンプルを許可するようにスケーリングすることができます。 バイオテクノロジーと製薬会社は、微生物学、分子遺伝学における最も基本的な技術のためのハイスループット技術の開発にかなりのリソースを投資しています。例えば、一度に最大8または12サンプルのボリューム転送を実行するためにマルチチャンネルmicropipettorsがあります。さらに96チャンネルピペットヘッドを操縦するロボットワークステーションがあります！これらの取り組みは、実験に関連付けられている機械的な操作を実行するために必要なインスツルメンテーションを開発することができ、エンジニアやコンピュータプログラマと方法論の専門知識を持っている生物学者のペアリングは、科学者の学際的なチームを含んでいます。かかわらず、研究アプリケーションの、これらの技術を開発する企業で共有される目標は同じです - laboratoを自動化するRYプロセス、ツール、システム、機器、それらを集中的かつ効率的に少ない労働力となっています。

1. Yeast Tryptone Agar (YTA)
<table border="1">
	<tbody>
		<tr>
			<td>Yeast extract</td>
			<td>2.0 g</td>
		</tr>
		<tr>
			<td>Tryptone</td>
			<td>10.0 g</td>
		</tr>
		<tr>
			<td>Agar</td>
			<td>15.0 g</td>
		</tr>
		<tr>
			<td>Distilled water</td>
			<td>up to 1000.0 ml</td>
		</tr>
		<tr>
			<td>&nbsp;</td>
			<td>pH 7.0</td>
		</tr>
	</tbody>
</table>
Autoclave at 121&deg;C for 20 minutes to sterilize. Store at 4&deg;C.
If preparing tubes for the pour-plate procedure, allow the agar to cool to ~55&deg;C then add 2.0 ml of 50 mg/ml cycloheximide. Aseptically dispense 18.0 ml of the melted agar per 18 mm tube then store at 4&deg;C. The agar will solidify and will need to be melted in a steamer or microwave prior to use.
2. Minimal Salts Agar (MSA) + 0.1% (w/v) carbon source
<table border="1">
	<tbody>
		<tr>
			<td>NH4Cl</td>
			<td>1.0 g</td>
		</tr>
		<tr>
			<td>NH2HPO4&bull;2H2O</td>
			<td>2.14 g</td>
		</tr>
		<tr>
			<td>KH2PO4</td>
			<td>1.09 g</td>
		</tr>
		<tr>
			<td>MgSO4&bull;7H2O</td>
			<td>0.2 g</td>
		</tr>
		<tr>
			<td>Carbon source*</td>
			<td>1.0 g</td>
		</tr>
		<tr>
			<td>Trace salts solution**</td>
			<td>10.0 ml</td>
		</tr>
		<tr>
			<td>Agar</td>
			<td>15.0 g</td>
		</tr>
		<tr>
			<td>Distilled water</td>
			<td>up to 1000.0 ml</td>
		</tr>
		<tr>
			<td>&nbsp;</td>
			<td>pH 7.0</td>
		</tr>
	</tbody>
</table>
Autoclave at 121&deg;C for 20 minutes to sterilize. Store at 4&deg;C.
* Carbon sources used for experiments presented in Figure 13 include acetamide, lactose, and glycine.
** Trace salts solution is prepared in 0.1 N HCl as follows. It is added to the base before sterilization (autoclave at 121&deg;C for 20 minutes).
<table border="1">
	<tbody>
		<tr>
			<td>FeSO4&bull;7H2O</td>
			<td>300.0 mg</td>
		</tr>
		<tr>
			<td>MnCl2&bull;4H2O</td>
			<td>180.0 mg</td>
		</tr>
		<tr>
			<td>Co(NO3)2&bull;6H2O</td>
			<td>130.0 mg</td>
		</tr>
		<tr>
			<td>ZnSO4.7H2O</td>
			<td>40.0 mg</td>
		</tr>
		<tr>
			<td>H2MoO4</td>
			<td>20.0 mg</td>
		</tr>
		<tr>
			<td>CuSO4&bull;5H2O</td>
			<td>1.0 mg</td>
		</tr>
		<tr>
			<td>CaCl2</td>
			<td>1000.0 mg</td>
		</tr>
		<tr>
			<td>HCl (0.1 N)</td>
			<td>up to 1000.0 ml</td>
		</tr>
	</tbody>
</table>
3. EHA soft agar (0.65 % w/v)
<table border="1">
	<tbody>
		<tr>
			<td>Agar</td>
			<td>6.5 g</td>
			<td>&nbsp;</td>
		</tr>
		<tr>
			<td>&nbsp;</td>
			<td>Tryptone</td>
			<td>13.0 g</td>
		</tr>
		<tr>
			<td>&nbsp;</td>
			<td>NaCl</td>
			<td>8.0 g</td>
		</tr>
		<tr>
			<td>&nbsp;</td>
			<td>Na Citrate&bull;2H2O</td>
			<td>2.0 g</td>
		</tr>
		<tr>
			<td>&nbsp;</td>
			<td>Glucose</td>
			<td>3.0 g</td>
		</tr>
		<tr>
			<td>&nbsp;</td>
			<td>Distilled water</td>
			<td>up to 1000.0 ml</td>
		</tr>
	</tbody>
</table>
Autoclave at 121&deg;C for 20 minutes to sterilize. Store at 4&deg;C.
4. EHA hard agar (1.2% w/v)
<table border="1">
	<tbody>
		<tr>
			<td>Agar</td>
			<td>12.0 g</td>
		</tr>
		<tr>
			<td>Tryptone</td>
			<td>13.0 g</td>
		</tr>
		<tr>
			<td>NaCl</td>
			<td>8.0 g</td>
		</tr>
		<tr>
			<td>Na Citrate&bull;2H2O</td>
			<td>2.0 g</td>
		</tr>
		<tr>
			<td>Glucose</td>
			<td>3.0 g</td>
		</tr>
		<tr>
			<td>Distilled water</td>
			<td>up to 1000.0 ml</td>
		</tr>
	</tbody>
</table>
Autoclave at 121&deg;C for 20 minutes to sterilize. Store at 4&deg;C.
5. 1X Middlebrook Top Agar (MBTA soft agar, 0.5% w/v)
<table border="1">
	<tbody>
		<tr>
			<td>100 mM CaCl2 stock*</td>
			<td>1 ml</td>
		</tr>
		<tr>
			<td>7H9 liquid medium: Neat **</td>
			<td>50 ml</td>
		</tr>
		<tr>
			<td>2XTA ***</td>
			<td>50 ml</td>
		</tr>
	</tbody>
</table>
Melt 50 ml of 2XTA and allow it to cool to ~55&deg;C. Using aseptic technique, add the CaCl2 and 7H9 broth to the melted agar. Aseptically dispense 4.5 ml of the mixture per 13 mm tube and store in a 55&deg;C incubator &le;7 days. Cooling MBTA to room temperature or 4&deg;C will cause the CaCl2 to precipitate out of solution.
* 100 mM CaCl2. stock must be stored at room temperature to prevent CaCl2 from precipitating out of solution.
** 7H9 liquid medium: Neat
<table border="1">
	<tbody>
		<tr>
			<td>7H9 broth base</td>
			<td>4.7 g</td>
		</tr>
		<tr>
			<td>40% glycerol stock</td>
			<td>5 ml</td>
		</tr>
		<tr>
			<td>Distilled water</td>
			<td>up to 900.0 ml</td>
		</tr>
	</tbody>
</table>
Mix the base with water then add the glycerol while stirring. Autoclave at 121&deg;C for 20 minutes to sterilize. Store at 4&deg;C.
*** 2X Middlebrook Top Agar (2XTA, 1.0% w/v)
<table border="1">
	<tbody>
		<tr>
			<td>7H9 broth base</td>
			<td>4.7 g</td>
		</tr>
		<tr>
			<td>Agar</td>
			<td>1.0 g</td>
		</tr>
		<tr>
			<td>Distilled water</td>
			<td>up to 1000.0 ml</td>
		</tr>
	</tbody>
</table>
Autoclave at 121&deg;C for 20 minutes to sterilize. Dispense 50 ml aliquots into 100 ml bottles and store at 4&deg;C.
6. Middlebrook 7H10 Agar Plates (MHA hard agar, 1.9% w/v)
<table border="1">
	<tbody>
		<tr>
			<td>7H10 agar base</td>
			<td>19.0 g</td>
		</tr>
		<tr>
			<td>40% glycerol stock</td>
			<td>12.5 ml</td>
		</tr>
		<tr>
			<td>Distilled water</td>
			<td>887.5 ml</td>
		</tr>
	</tbody>
</table>
Mix the agar base with water then add the glycerol while stirring. Heat the solution to boiling then stir for one minute to completely dissolve the base powder. Autoclave at 121&deg;C for 20 minutes to sterilize. Allow the agar to cool to ~55&deg;C then aseptically add the following reagents:
<table border="1">
	<tbody>
		<tr>
			<td>AD supplement (pre-warmed to 37&deg;C)*</td>
			<td>100 ml</td>
		</tr>
		<tr>
			<td>50 mg/ml Carbenicillin **</td>
			<td>1.0 ml</td>
		</tr>
		<tr>
			<td>10 mg/ml Cycloheximide **</td>
			<td>1.0 ml</td>
		</tr>
	</tbody>
</table>
* AD supplement
<table border="1">
	<tbody>
		<tr>
			<td>NaCl &gt;</td>
			<td>17 g &gt;</td>
		</tr>
		<tr>
			<td>Albumin (Fraction V)&gt;</td>
			<td>100 g&gt;</td>
		</tr>
		<tr>
			<td>Dextrose (D-Glucose)&gt;</td>
			<td>40 g&gt;</td>
		</tr>
		<tr>
			<td>Distilled water&gt;</td>
			<td>up to 2000.0 ml&gt;</td>
		</tr>
	</tbody>
</table>
Filter-sterilize this solution; do not autoclave. Store at 4&deg;C.
** Filter-sterilize and store these solutions at 4&deg;C for &le;60 days.
7. LB agar (1.5% w/v) + X-Gal (60 &mu;g/ml)
<table border="1">
	<tbody>
		<tr>
			<td>Tryptone</td>
			<td>10.0 g</td>
		</tr>
		<tr>
			<td>Yeast extract</td>
			<td>5.0 g</td>
		</tr>
		<tr>
			<td>NaCl</td>
			<td>10.0 g</td>
		</tr>
		<tr>
			<td>Agar</td>
			<td>15.0 g</td>
		</tr>
		<tr>
			<td>Distilled water</td>
			<td>up to 1000.0 ml</td>
		</tr>
		<tr>
			<td>&nbsp;</td>
			<td>pH 7.5 at 25&deg;C</td>
		</tr>
	</tbody>
</table>
Autoclave at 121&deg;C for 20 minutes to sterilize. Allow the agar to cool to ~55&deg;C then aseptically add 3.0 ml of 20 mg/ml X-Gal solution. Freshly prepare X-gal stock by dissolving 400 mg X-Gal in 20 ml dimethylformamide (DMF).
Table of specific reagents:
<table border="1">
	<tbody>
		<tr>
			<td>Name of the reagent</td>
			<td>Company</td>
			<td>Catalogue number</td>
		</tr>
		<tr>
			<td>Yeast extract</td>
			<td>Becton Dickenson</td>
			<td>212750</td>
		</tr>
		<tr>
			<td>Tryptone</td>
			<td>Becton Dickenson</td>
			<td>211705</td>
		</tr>
		<tr>
			<td>Agar</td>
			<td>Becton Dickenson</td>
			<td>214030</td>
		</tr>
		<tr>
			<td>NH4Cl</td>
			<td>Acros Organics</td>
			<td>123340010</td>
		</tr>
		<tr>
			<td>NH2HPO4&bull;2H2O</td>
			<td>Sigma-Aldrich</td>
			<td>30435</td>
		</tr>
		<tr>
			<td>KH2PO4</td>
			<td>Fisher Scientific</td>
			<td>BP 303-500</td>
		</tr>
		<tr>
			<td>MgSO4&bull;7H2O</td>
			<td>Sigma-Aldrich</td>
			<td>230391</td>
		</tr>
		<tr>
			<td>Acetamide</td>
			<td>Sigma-Aldrich</td>
			<td>A-0500</td>
		</tr>
		<tr>
			<td>Lactose</td>
			<td>Fisher Scientific</td>
			<td>L6-500</td>
		</tr>
		<tr>
			<td>Glycine</td>
			<td>Sigma-Aldrich</td>
			<td>G-7126</td>
		</tr>
		<tr>
			<td>FeSO4&bull;7H2O</td>
			<td>Sigma-Aldrich</td>
			<td>F8048</td>
		</tr>
		<tr>
			<td>MnCl2&bull;4H2O</td>
			<td>Sigma-Aldrich</td>
			<td>M-3634</td>
		</tr>
		<tr>
			<td>Co(NO3)2&bull;6H2O</td>
			<td>Sigma-Aldrich</td>
			<td>230375</td>
		</tr>
		<tr>
			<td>ZnSO4.7H2O</td>
			<td>Sigma-Aldrich</td>
			<td>Z4750</td>
		</tr>
		<tr>
			<td>H2MoO4</td>
			<td>Acros Organics</td>
			<td>213621000</td>
		</tr>
		<tr>
			<td>CuSO4&bull;5H2O</td>
			<td>Sigma-Aldrich</td>
			<td>209198</td>
		</tr>
		<tr>
			<td>CaCl2</td>
			<td>Sigma-Aldrich</td>
			<td>C1016</td>
		</tr>
		<tr>
			<td>HCl</td>
			<td>Fisher Scientific</td>
			<td>A144-212</td>
		</tr>
		<tr>
			<td>Cycloheximide</td>
			<td>Sigma</td>
			<td>038K1561</td>
		</tr>
		<tr>
			<td>Carbenicillin</td>
			<td>Cellgro</td>
			<td>46-100-RG</td>
		</tr>
		<tr>
			<td>NaCl</td>
			<td>Fisher</td>
			<td>S271-1</td>
		</tr>
		<tr>
			<td>Na Citrate&bull;2H2O</td>
			<td>Fisher</td>
			<td>S279-500</td>
		</tr>
		<tr>
			<td>Glucose (Dextrose)</td>
			<td>BD</td>
			<td>215530</td>
		</tr>
		<tr>
			<td>7H9 broth base</td>
			<td>BD</td>
			<td>271310</td>
		</tr>
		<tr>
			<td>7H10 agar base</td>
			<td>BD</td>
			<td>262710</td>
		</tr>
		<tr>
			<td>Glycerol</td>
			<td>Shelton</td>
			<td>IB15760</td>
		</tr>
		<tr>
			<td>Albumin (Fraction V)</td>
			<td>Fisher</td>
			<td>S71907</td>
		</tr>
		<tr>
			<td>X-Gal (5-bromo-4-chloro-3-indolyl-&beta;-D-galactopyranoside)</td>
			<td>Teknova</td>
			<td>X1205</td>
		</tr>
		<tr>
			<td>Dimethylformamide (DMF)</td>
			<td>Sigma</td>
			<td>D4551</td>
		</tr>
		<tr>
			<td>Ethanol</td>
			<td>Fisher</td>
			<td>CDA19</td>
		</tr>
		<tr>
			<td>Chlorine Bleach</td>
			<td>Chlorox</td>
			<td>02490/06644884</td>
		</tr>
		<tr>
			<td>CiDecon (disinfectant)</td>
			<td>Decon Laboratories, Inc.</td>
			<td>8504</td>
		</tr>
	</tbody>
</table>
Table of specific equipment:
<table border="1">
	<tbody>
		<tr>
			<td>Name of equipment</td>
			<td>Company</td>
			<td>Catalogue number</td>
			<td>Experiment</td>
		</tr>
		<tr>
			<td>Metal loops</td>
			<td>American Educational Products</td>
			<td>S17352</td>
			<td> Streak plating</td>
		</tr>
		<tr>
			<td>Disposable plastic loops</td>
			<td>Fisher</td>
			<td>22-363-602</td>
			<td> Streak plating</td>
		</tr>
		<tr>
			<td>Wooden sticks</td>
			<td>Fisher</td>
			<td>23-400-104</td>
			<td> Streak plating</td>
		</tr>
		<tr>
			<td>Flat Toothpicks</td>
			<td>American Educational Products</td>
			<td>S67859</td>
			<td>Streak plating</td>
		</tr>
		<tr>
			<td>Turn tables</td>
			<td>Fisher</td>
			<td>08-758Q</td>
			<td>Spread plating</td>
		</tr>
		<tr>
			<td>Glass rods</td>
			<td>Bellco Glass</td>
			<td>NC9004380</td>
			<td>Spread plating</td>
		</tr>
		<tr>
			<td>4 mm glass beads</td>
			<td>Fisher</td>
			<td>11-312B</td>
			<td>Spread plating</td>
		</tr>
		<tr>
			<td>Velveteen cloth</td>
			<td>Bel-Art Products</td>
			<td>09-718-2</td>
			<td>Replica plating</td>
		</tr>
		<tr>
			<td>Cylindrical block</td>
			<td>Bel-Art Products</td>
			<td>09-718-1</td>
			<td>Replica plating</td>
		</tr>
	</tbody>
</table>

aseptic laboratory techniques: plating methods

微生物は、実験室での汚染の可能性のユビキタスソースを作成するすべての無生物表面上に存在しています。実験の成功は、作業面や機器を消毒するだけでなく、非滅菌表面と滅菌機器やソリューションの接触を防ぐために科学者の能力に依存しています。ここでは日常的に分離、伝播、あるいは細菌やファージなどの微生物を列挙するために実験室で使用されるいくつかのメッキ方法の手順を提示します。すべての5つのメソッドは、無菌操作、または実験材料の無菌性を維持する手順が組み込まれています。説明する手順は、単一のコロニーを分離する（1）筋メッキ細菌培養、（2）注ぐメッキ（3）拡散メッキ可能な細菌のコロニーを列挙するために、ファージおよび列挙プラークを単離するために（4）ソフト寒天オーバーレイ、および（含まれてい5）レプリカメッキ同一の空間的なパターンで別のプレートから細胞を転送します。これらの手順は、tで実行することができます彼の実験室のベンチは、彼らが微生物の非病原性株（バイオセーフティレベル1、BSL-1）を含む提供した。 BSL-2の生物を扱う場合、これらの操作はバイオセーフティーキャビネットで行われなければなりません。バイオハザード分類と同様に、問題の微生物に必要な安全上の注意と封じ込め施設を決定するために感染性物質用の最新の微生物とバイオメディカル研究所におけるバイオセーフティの版（BMBL）だけでなく、 化学物質等安全データシート （MSDS）を参照してください。菌株とファージ株は、 アメリカンタイプカルチャーコレクション （ATCC）などの特定の組織によって維持され、研究調査官、企業、およびコレクションから取得することができます。それは、様々なめっき法を学習するときに非病原性菌株を使用することをお勧めします。このプロトコルに記載されている手順に従うことによって、学生のことができるようになります。 <ul><li> contaminatiなく、メッキの手順を実行しますngのメディア。 </li><li>ストリークめっき法により、単一の細菌のコロニーを分離します。 </li><li>細菌の濃度を決定するために注ぐメッキと拡散メッキメソッドを使用します。 </li><li>ファージで作業する場合、ソフト寒天オーバーレイを実行します。 </li><li> 1プレートからレプリカメッキプロシージャを使用して別の細菌細胞を転送します。 </li><li>実験的なタスクが割り当てられ、適切なメッキ方法を選択します。 </li></ul>

Watch this Scientific Journal Video about Aseptic Laboratory Techniques: Plating Methods at JoVE.com

Aseptic Laboratory Techniques: Plating Methods

文化微生物に使用されるメディアや試薬を扱う場合は、無菌操作は、汚染が最小化されていることを確認するために練習する必要があります。メッキの様々な方法が日常的に、分離、伝播または列挙細菌やファージ、実験材料の無菌性を維持する手順を組み込むすべてがために使用されます。

無菌実験技術：めっき法

Microorganisms are present on all inanimate surfaces creating ubiquitous sources of possible contamination in the laboratory. Experimental success relies ...

aseptic-laboratory-techniques-plating-methods

Research

JoVE Journal

Biology

726.5K ビュー.  University of California, Los Angeles. 文化微生物に使用されるメディアや試薬を扱う場合は、無菌操作は、汚染が最小化されていることを確認するために練習する必要があります。メッキの様々な方法が日常的に、分離、伝播または列挙細菌やファージ、実験材料の無菌性を維持する手順を組み込むすべてがために使用されます。

ビデオ: Aseptic Laboratory Techniques: Plating Methods

Microbial Communities in Nature and Laboratory - Interview

自然と実験室での微生物群集 - インタビュー

生物学

Techniques for Imaging Ca2+ Signaling in Human Sperm

Fluorescence microscopy of cells loaded with fluorescent, Ca2+-sensitive dyes is used for measurement of spatial and temporal aspects of Ca2+ signaling in live cells. Here we describe the method used in our laboratories for loading suspensions of human sperm with Ca2+-reporting dyes and measuring the fluorescence signal during physiological stimulation. Motile cells are isolated by direct swim-up and incubated under capacitating conditions for 0-24 h, depending upon the experiment. The cell-permeant AM (acetoxy methyl ester) ester form of the Ca2+-reporting dye is then added to a cell aliquot and a period of 1 h is allowed for loading of the dye into the cytoplasm. We use visible wavelength dyes to minimize photo-damage to the cells, but this means that ratiometric recording is not possible. Advantages and disadvantages of this approach are discussed. During the loading period cells are introduced into an imaging chamber and allowed to adhere to a poly-D-lysine coated coverslip. At the end of the loading period excess dye and loose cells are removed by connection of the chamber to the perfusion apparatus. The chamber is perfused continuously, stimuli and modified salines are then added to the perfusion header. Experiments are recorded by time-lapse acquisition of fluorescence images and analyzed in detail offline, by manually drawing regions of interest. Data are normalized to pre-stimulus levels such that, for each cell (or part of a cell), a graph showing the Ca2+ response as % change in fluorescence is obtained.

Techniques for Imaging Ca2+ Signaling in Human Sperm

Stimulus-evoked [Ca2+]i signals of individual human sperm are assessed. Motile cells are loaded with Ca2+-sensitive fluorescent dye (AM-ester method) and immobilised in a perfusable chamber. Cells are imaged by time-lapse fluorescence microscopy and stimulated via the perfusing medium. Responses of single cells (or regions) are analysed offline using Excel.

イメージングカルシウムのためのテクニック 2 +人間の精子でシグナリング

Fluorescence microscopy of cells loaded with fluorescent, Ca2+-sensitive dyes is used for measurement of spatial and temporal aspects of Ca2+ signaling in ...

Aseptic Laboratory Techniques: Volume Transfers with Serological Pipettes and Micropipettors

Microorganisms are everywhere - in the air, soil, and human body as well as on inanimate surfaces like laboratory benches and computer keyboards. The ubiquity of microbes creates a copious supply of potential contaminants in a laboratory. To ensure experimental success, the number of contaminants on equipment and work surfaces must be minimized. Common among many experiments in microbiology are techniques involving the measurement and transfer of cultures containing bacterial cells or viral particles. To do so without contacting non-sterile surfaces or contaminating sterile media requires (1) preparing a sterile workspace, (2) precisely setting and accurately reading instruments for aseptic transfer of liquids, and (3) properly manipulating instruments, cultures flasks, bottles and tubes within a sterile field. Learning these procedures calls for training and practice. At first, actions should be slow, deliberate, and controlled with the goal being for aseptic technique to become second nature when working at the bench. Here we present the steps for measuring volumes using serological pipettes and micropipettors within a sterile field created by a Bunsen burner. Volumes range from microliters (&mu;l) to milliliters (ml) depending on the instrument used. Liquids commonly transferred include sterile broth or chemical solutions as well as bacterial cultures and phage stocks. By following these procedures, students should be able to: &#8226;Work within the sterile field created by the Bunsen burner flame. &#8226;Use serological pipettes without compromising instrument sterility.&#8226; Aspirate liquids with serological pipettes, precisely reading calibrated volumes by aligning the meniscus formed by the liquid to the graduation marks on the pipette. &#8226;Keep culture bottles, flasks, tubes and their respective caps sterile during liquid transfers. &#8226;Identify different applications for plastic versus glass serological pipettes. &#8226;State accuracy limitations for micropipettors. &#8226;Precisely and accurately set volumes on micropipettors. &#8226;Know how to properly use the first and second stop on a micropipettor to aspirate and transfer correct volumes.

When working in a laboratory, it is imperative to minimize sources of contamination. Aseptic technique refers to procedures that permit transfer of cultures and reagents while avoiding contact with non-sterile surfaces. Serological pipettes and micropipettors are used to measure precise volumes without compromising sterility of solutions used in experiments.

無菌室のテクニック：血清ピペットMicropipettorsのボリュームを転送

Microorganisms are everywhere - in the air, soil, and human body as well as on inanimate surfaces like laboratory benches and computer keyboards. The ...

Optimized Staining and Proliferation Modeling Methods for Cell Division Monitoring using Cell Tracking Dyes

Fluorescent cell tracking dyes, in combination with flow and image cytometry, are powerful tools with which to study the interactions and fates of different cell types in vitro and in vivo.1-5 Although there are literally thousands of publications using such dyes, some of the most commonly encountered cell tracking applications include monitoring of:
<ol>
	<li>stem and progenitor cell quiescence, proliferation and/or differentiation6-8</li>
	<li>antigen-driven membrane transfer9 and/or precursor cell proliferation3,4,10-18 and</li>
	<li>immune regulatory and effector cell function1,18-21.</li>
</ol>
Commercially available cell tracking dyes vary widely in their chemistries and fluorescence properties but the great majority fall into one of two classes based on their mechanism of cell labeling. "Membrane dyes", typified by PKH26, are highly lipophilic dyes that partition stably but non-covalently into cell membranes1,2,11. "Protein dyes", typified by CFSE, are amino-reactive dyes that form stable covalent bonds with cell proteins4,16,18. Each class has its own advantages and limitations. The key to their successful use, particularly in multicolor studies where multiple dyes are used to track different cell types, is therefore to understand the critical issues enabling optimal use of each class2-4,16,18,24.
The protocols included here highlight three common causes of poor or variable results when using cell-tracking dyes. These are:
<ol>
	<li>Failure to achieve bright, uniform, reproducible labeling. This is a necessary starting point for any cell tracking study but requires attention to different variables when using membrane dyes than when using protein dyes or equilibrium binding reagents such as antibodies.</li>
	<li>Suboptimal fluorochrome combinations and/or failure to include critical compensation controls. Tracking dye fluorescence is typically 102 - 103 times brighter than antibody fluorescence. It is therefore essential to verify that the presence of tracking dye does not compromise the ability to detect other probes being used.</li>
	<li>Failure to obtain a good fit with peak modeling software. Such software allows quantitative comparison of proliferative responses across different populations or stimuli based on precursor frequency or other metrics. Obtaining a good fit, however, requires exclusion of dead/dying cells that can distort dye dilution profiles and matching of the assumptions underlying the model with characteristics of the observed dye dilution profile.</li>
</ol>
Examples given here illustrate how these variables can affect results when using membrane and/or protein dyes to monitor cell proliferation.

Successful use of cell tracking dyes to monitor immune cell function and proliferation involves several critical steps. We describe methods for: 1) obtaining bright, uniform, reproducible label-ing with membrane dyes; 2) selecting fluorochromes and data acquisition conditions; and 3) choosing a model to quantify cell proliferation based on dye dilution.

細胞トラッキング染料を使用して細胞分裂監視のための最適化された染色と増殖モデリング方法

Fluorescent cell tracking dyes, in combination with flow and image cytometry, are powerful tools with which to study the interactions and fates of ...

Techniques for the Analysis of Extracellular Vesicles Using Flow Cytometry

Extracellular Vesicles (EVs) are small, membrane-derived vesicles found in bodily fluids that are highly involved in cell-cell communication and help regulate a diverse range of biological processes. Analysis of EVs using flow cytometry (FCM) has been notoriously difficult due to their small size and lack of discrete populations positive for markers of interest. Methods for EV analysis, while considerably improved over the last decade, are still a work in progress. Unfortunately, there is no one-size-fits-all protocol, and several aspects must be considered when determining the most appropriate method to use. Presented here are several different techniques for processing EVs and two protocols for analyzing EVs using either individual detection or a bead-based approach. The methods described here will assist with eliminating the antibody aggregates commonly found in commercial preparations, increasing signal&#8211;to-noise ratio, and setting gates in a rational fashion that minimizes detection of background fluorescence. The first protocol uses an individual detection method that is especially well suited for analyzing a high volume of clinical samples, while the second protocol uses a bead-based approach to capture and detect smaller EVs and exosomes.

Many different methods exist for the measurement of extracellular vesicles (EVs) using flow cytometry (FCM). Several aspects should be considered when determining the most appropriate method to use. Two protocols for measuring EVs are presented, using either individual detection or a bead-based approach.

フローサイトメトリーを用いて細胞外小胞の分析のための技術

Extracellular Vesicles (EVs) are small, membrane-derived vesicles found in bodily fluids that are highly involved in cell-cell communication and help ...

Cultivation of Caenorhabditis elegans in Three Dimensions in the Laboratory

The use of genetic model organisms such as Caenorhabditis elegans has led to seminal discoveries in biology over the last five decades. Most of what we know about C. elegans is limited to laboratory cultivation of the nematodes that may not necessarily reflect the environments they normally inhabit in nature. Cultivation of C. elegans in a 3D habitat that is more similar to the 3D matrix that worms encounter in rotten fruits and vegetative compost in nature could reveal novel phenotypes and behaviors not observed in 2D. In addition, experiments in 3D can address how phenotypes we observe in 2D are relevant for the worm in nature. Here, a new method in which C. elegans grows and reproduces normally in three dimensions is presented. Cultivation of C. elegans in Nematode Growth Tube-3D (NGT-3D) can allow us to measure the reproductive fitness of C. elegans strains or different conditions in a 3D environment. We also present a novel method, termed Nematode Growth Bottle-3D (NGB-3D), to cultivate C. elegans in 3D for microscopic analysis. These methods allow scientists to study C. elegans biology in conditions that are more reflective of the environments they encounter in nature. These can help us to understand the overlying evolutionary relevance of the physiology and behavior of C. elegans we observe in the laboratory.

Cultivation of Caenorhabditis elegans in Three Dimensions in the Laboratory

We present a simple method to construct 3D nematode cultivation systems called NGT-3D and NGB-3D. These can be used to study nematode fitness and behaviors in habitats that are more similar to natural Caenorhabditis elegans habitats than the standard 2D laboratory C. elegans culture plates.

の栽培<em&gt;線虫（Caenorhabditis elegans）</em&gt;ラボにおける三次元で

The use of genetic model organisms such as Caenorhabditis elegans has led to seminal discoveries in biology over the last five decades. Most of what we ...

Characterization of Calcification Events Using Live Optical and Electron Microscopy Techniques in a Marine Tubeworm

Characterizing the first event of biological production of calcium carbonate requires a combination of microscopy approaches. First, intracellular pH distribution and calcium ions can be observed using live microscopy over time. This allows identification of the life stage and the tissue with the feature of interest for further electron microscopy studies. Life stage and tissues of interest are typically higher in pH and Ca signals. 
Here, using H. elegans, we present a protocol to characterize the presence of calcium carbonate structures in a biological specimen on the scanning electron microscope (SEM), using energy-dispersive X-ray spectroscopy (EDS) to visualize elemental composition, using electron backscatter diffraction (EBSD) to determine the presence of crystalline structures, and using transmission electron microscopy (TEM) to analyze the composition and structure of the material. In this protocol, a focused ion beam (FIB) is used to isolate samples with dimension suitable for TEM analysis. As FIB is a site specific technique, we demonstrate how information from the previous techniques can be used to identify the region of interest, where Ca signals are highest.

We demonstrate the use of various microscopy methods that are useful in observing the calcification of a tubeworm, Hydroides elegans, as well as locating and characterizing the first calcified material. Live microscopy and electron microscopy are used together to provide functional and material information that are important in studying biomineralization.

マリンTubewormでライブ光学および電子顕微鏡技術を用いた石灰化イベントのキャラクタリゼーション

Characterizing the first event of biological production of calcium carbonate requires a combination of microscopy approaches. First, intracellular pH ...

Techniques to Induce and Quantify Cellular Senescence

In response to cellular stress or damage, proliferating cells can induce a specific program that initiates a state of long-term cell-cycle arrest, termed cellular senescence. Accumulation of senescent cells occurs with organismal aging and through continual culturing in vitro. Senescent cells influence many biological processes, including embryonic development, tissue repair and regeneration, tumor suppression, and aging. Hallmarks of senescent cells include, but are not limited to, increased senescence-associated &#946;-galactosidase activity (SA-&#946;-gal); p16INK4A, p53, and p21 levels; higher levels of DNA damage, including &#947;-H2AX; the formation of Senescence-associated Heterochromatin Foci (SAHF); and the acquisition of a Senescence-associated Secretory Phenotype (SASP), a phenomenon characterized by the secretion of a number of pro-inflammatory cytokines and signaling molecules. Here, we describe protocols for both replicative and DNA damage-induced senescence in cultured cells. In addition, we highlight techniques to monitor the senescent phenotype using several senescence-associated markers, including SA-&#946;-gal, &#947;-H2AX and SAHF staining, and to quantify protein and mRNA levels of cell cycle regulators and SASP factors. These methods can be applied to the assessment of senescence in various models and tissues.

Cellular senescence, the irreversible state of cell-cycle arrest, can be induced by various cellular stresses. Here, we describe protocols to induce cellular senescence and methods to assess markers of senescence.

誘導および定量化細胞老化するテクニック

In response to cellular stress or damage, proliferating cells can induce a specific program that initiates a state of long-term cell-cycle arrest, termed ...

Methods for the Extraction of Endosymbionts from the Whitefly Bemisia tabaci

Bacterial symbionts form an intimate relationship with their hosts and confer advantages to the hosts in most cases. Genomic information is critical to study the functions and evolution of bacterial symbionts in their host. As most symbionts cannot be cultured in vitro, methods to isolate an adequate quantity of bacteria for genome sequencing are very important. In the whitefly Bemisia tabaci, a number of endosymbionts have been identified and are predicted to be of importance in the development and reproduction of the pests through multiple approaches. However, the mechanism underpinning the associations remains largely unknown. The obstacle partially comes from the fact that the endosymbionts in whitefly, mostly restrained in bacteriocytes, are hard to separate from the host cells. Here we report a step-by-step protocol for the identification, extraction and purification of endosymbionts from the whitefly B. tabaci mainly by dissection and filtration. Endosymbiont samples prepared by this method, although still a mixture of different endosymbiont species, are suitable for subsequent genome sequencing and analysis of the possible roles of endosymbionts in B. tabaci. This method may also be used to isolate endosymbionts from other insects.

Methods for the Extraction of Endosymbionts from the Whitefly Bemisia tabaci

Here, we present a protocol to isolate endosymbionts from the whitefly Bemisia tabaci through dissection and filtration. After amplification, the DNA samples are suitable for subsequent sequencing and study of the mutualism between endosymbionts and whitefly.

白蝶貝からの内生菌の抽出方法<em&gt;ベミシア・タバチ</em

Bacterial symbionts form an intimate relationship with their hosts and confer advantages to the hosts in most cases. Genomic information is critical to ...

Simple and Effective Administration and Visualization of Microparticles in the Circulatory System of Small Fishes Using Kidney Injection

The systemic administration of micro-size particles into a living organism can be applied for vasculature visualization, drug and vaccine delivery, implantation of transgenic cells and tiny optical sensors. However, intravenous microinjections into small animals, which are mostly used in biological and veterinary laboratories, are very difficult and require trained personnel. Herein, we demonstrate a robust and efficient method for the introduction of microparticles into the circulatory system of adult zebrafish (Danio rerio) by injection into the fish kidney. To visualize the introduced microparticles in the vasculature, we propose a simple intravital imaging technique in fish gills. In vivo monitoring of the zebrafish blood pH was accomplished using an injected microencapsulated fluorescent probe, SNARF-1, to demonstrate one of the possible applications of the described technique. This article provides a detailed description of the encapsulation of pH-sensitive dye and demonstrates the principles of the quick injection and visualization of the obtained microcapsules for in vivo recording of the fluorescent signal. The proposed method of injection is characterized by a low mortality rate (0-20%) and high efficiency (70-90% success), and it is easy to institute using commonly available equipment. All described procedures can be performed on other small fish species, such as guppies and medaka.

This article demonstrates the principles of a quick, minimally invasive injection of fluorescent microparticles into the circulatory system of small fishes and the in vivo visualization of the microparticles in fish blood.

シンプルで効果的な管理と腎臓の注入を使用する小型魚の循環システムの微粒子の可視化

The systemic administration of micro-size particles into a living organism can be applied for vasculature visualization, drug and vaccine delivery, ...

無菌実験技術：めっき法

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