Systems Biology Laboratory,
Melbourne School of Engineering,
Department of Biomedical Engineering,
School of Mathematics and Statistics,
Faculty of Science,
ARC Centre of Excellence in Convergent Bio-Nano Science and Technology,
School of Medicine,
Faculty of Medicine,
Dentistry and Health Sciences,
Systems Biology Laboratory, Melbourne School of Engineering,
School of Mathematics and Statistics, Faculty of Science,
School of Medicine, Faculty of Medicine, Dentistry and Health Sciences
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Biclustering reveals breast cancer tumour subgroups with common clinical features and improves prediction of disease recurrence.
BMC genomics Feb, 2013 | Pubmed ID: 23405961
Integration of steady-state and temporal gene expression data for the inference of gene regulatory networks.
PloS one , 2013 | Pubmed ID: 23967277
Multiscale modelling of saliva secretion.
Mathematical biosciences Nov, 2014 | Pubmed ID: 25014770
NAIL, a software toolset for inferring, analyzing and visualizing regulatory networks.
Bioinformatics (Oxford, England) Jan, 2015 | Pubmed ID: 25246431
Energy-based analysis of biochemical cycles using bond graphs.
Proceedings. Mathematical, physical, and engineering sciences Nov, 2014 | Pubmed ID: 25383030
Virtual Reference Environments: a simple way to make research reproducible.
Briefings in bioinformatics Sep, 2015 | Pubmed ID: 25433467
Predicting expression: the complementary power of histone modification and transcription factor binding data.
Epigenetics & chromatin , 2014 | Pubmed ID: 25489339
Stimulus-dependent differences in signalling regulate epithelial-mesenchymal plasticity and change the effects of drugs in breast cancer cell lines.
Cell communication and signaling : CCS May, 2015 | Pubmed ID: 25975820
Modelling the conditional regulatory activity of methylated and bivalent promoters.
Epigenetics & chromatin , 2015 | Pubmed ID: 26097508
A spatial model of fluid recycling in the airways of the lung.
Journal of theoretical biology Oct, 2015 | Pubmed ID: 26169010
Regulation of ERK-MAPK signaling in human epidermis.
BMC systems biology Jul, 2015 | Pubmed ID: 26209520
Regulation of cardiac cellular bioenergetics: mechanisms and consequences.
Physiological reports Jul, 2015 | Pubmed ID: 26229005
Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes.
PLoS computational biology Sep, 2015 | Pubmed ID: 26335304
Network analysis of an in vitro model of androgen-resistance in prostate cancer.
BMC cancer Nov, 2015 | Pubmed ID: 26553226
Spatially transformed fluorescence image data for ERK-MAPK and selected proteins within human epidermis.
GigaScience , 2015 | Pubmed ID: 26675891
Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases.
PloS one , 2015 | Pubmed ID: 26716837
A Framework to Account for Sedimentation and Diffusion in Particle-Cell Interactions.
Langmuir : the ACS journal of surfaces and colloids Nov, 2016 | Pubmed ID: 27384770
Myocardial energetics is not compromised during compensated hypertrophy in the Dahl salt-sensitive rat model of hypertension.
American journal of physiology. Heart and circulatory physiology Sep, 2016 | Pubmed ID: 27402668
Information theoretic approaches for inference of biological networks from continuous-valued data.
BMC systems biology 09, 2016 | Pubmed ID: 27599566
Modelling modal gating of ion channels with hierarchical Markov models.
Proceedings. Mathematical, physical, and engineering sciences Aug, 2016 | Pubmed ID: 27616917
Modular bond-graph modelling and analysis of biomolecular systems.
IET systems biology Oct, 2016 | Pubmed ID: 27762233
Distributed gene expression modelling for exploring variability in epigenetic function.
BMC bioinformatics Nov, 2016 | Pubmed ID: 27816056
Systems analysis identifies miR-29b regulation of invasiveness in melanoma.
Molecular cancer 11, 2016 | Pubmed ID: 27852308
Changes in mitochondrial morphology and organization can enhance energy supply from mitochondrial oxidative phosphorylation in diabetic cardiomyopathy.
American journal of physiology. Cell physiology Feb, 2017 | Pubmed ID: 27903587
Energy-based analysis of biomolecular pathways.
Proceedings. Mathematical, physical, and engineering sciences Jun, 2017 | Pubmed ID: 28690404
Experimental and modelling evidence of shortening heat in cardiac muscle.
The Journal of physiology Oct, 2017 | Pubmed ID: 28771742
DiSNE Movie Visualization and Assessment of Clonal Kinetics Reveal Multiple Trajectories of Dendritic Cell Development.
Cell reports Mar, 2018 | Pubmed ID: 29514085
Vijay Rajagopal1,2,3,
Gregory Bass2,3,
Shouryadipta Ghosh1,2,3,
Hilary Hunt2,4,
Cameron Walker5,
Eric Hanssen6,
Edmund Crampin2,3,4,7,8,
Christian Soeller9
1Cell Structure and Mechanobiology Group, University of Melbourne,
2Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne,
3Department of Biomedical Engineering, University of Melbourne,
4School of Mathematics and Statistics, Faculty of Science, University of Melbourne,
5Department of Engineering Science, University of Auckland,
6Advanced Microscopy Facility, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne,
7ARC Centre of Excellence in Convergent Bio-Nano Science and Technology, University of Melbourne,
8School of Medicine, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne,
9Living Systems Institute, University of Exeter
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