The authors would like to thank Ikiel Ptito for his continued technical support. NSERC grant to MP.

Part 1: Pre-processing of tissue
<ol>
<li>Tissue should be well perfused with paraformaldehyde, glutaraldehyde, or formalin. This can be achieved through standard transcardial perfusion typically used to harvest other organs. In the present study the subject was deeply sedated with ketamine hydrochloride (10 mg/kg, i.m.), euthanized with an overdose of sodium pentobarbital (25 mg/kg, i.v.) and perfused transcardially with 0.1 M PBS until completely exsanguinated.This is followed by a 4% paraformaldehyde solution in PBS for 5 min (~1 liter).</li>
</ol>
Part 2: Stereotaxic blocking
<ol>
<li>Prior to placing the head into the stereotaxic frame the coordinates of the Horsley-Clarke/interaural plane zero needs to be taken. This is the theoretical midpoint between the ears. To measure this plane, the ear bars need to be equally fitted in the apparatus, then place a scalpel blade in the stereotaxic manipulator arm and measure the midpoint between the ear bars. This is important for determining where to block the tissue based on research needs. Once this is completed the skull needs to be prepared for fixation into the stereotaxic apparatus.</li>
<li>In order to place the head into the stereotaxic frame the lower jaw will have to be removed with bone rongeurs and a scalpel. Additionally the skin, muscle, and connective tissue should be removed in order to expose the skull. Once the connective tissue is removed from the skull, expose the brain by chipping away the calvaria (the tabular portion of the occipital bone as well as the parietal, ad frontal bones). In the present experiment part of the calvaria has all ready been removed. Be careful not to completely remove the temporal bones because the ear canals will need to be intact to place the head into the stereotaxic frame. The remaining dura matter should be removed from the exposed brain. The skull is now ready to be placed into the stereotaxic frame.</li>
<li>In the same manner in which one would perform a stereotaxic surgery, adjust the eye, palate, and ear bars such that the head is securely fixed in the stereotaxic apparatus. Place the stereotaxic manipulator in the predetermined anterior/posterior (A/P) coordinates and move the manipulator to the lateral aspect of the brain. Slowly lower the blade into the brain, completely raise the blade from the brain, then move medially and lower the blade again. Repeat these two steps until the blade has reached the lateral aspect of the opposite hemisphere. This completes the first coronal block. For subsequent coronal blocks move the manipulator 1cm in the A/P axis and repeat until the entire brain has been blocked.</li>
</ol>
Part 3: Removing the brain from the skull
<ol>
<li>Remove the head from the stereotaxic frame and hold the exposed brain in the palm of your hand. Try to secure the brain by lightly placing coddling the brain in the palm of your hand and place your pinky finger across the frontal lobes, this minimizes movement of the brain in the skull. In order to prevent the drying of the pial surface of the brain, place a piece of PBS dampened gauze across the brain. Hold the head firmly by the skull and chip away the remaining occipital and temporal bones along with the spinal column. This exposes the base and lateral aspects of the brain. Lastly remove any remaining frontal bone and the nasal bone, which will allow access to the olfactory bulbs. It is important to remove the frontal bone last because as you remove the base of the skull the brain moves slightly and the frontal lobes can become damaged on the jagged edges of the fontal bone. Cut away and remove remaining dura matter. Carefully lift the front of the brain, slide the scalpel under the brain and free the brain from the skull.</li>
</ol>
Part 4: Measurements
<ol>
<li>There are a number of useful measurements that can be made prior to freezing. For example, the A/P axis of the brain with a caliper. Furthermore the specific density can be measured by weighing the brain, measuring volume by the displacement of water in a graduated cylinder then dividing weight by volume displacement (Table 1).</li>
</ol>
Part 5: Finish blocking the brain.
<ol>
<li>Typically when the scalpel blade is inserted into the brain it is not long enough to completely penetrate the full dorsal-ventral extent of the brain. Once the brain is removed and gross measurements are obtained, take a tissue-slicing blade and finish blocking the brain through to the ventral side of the brain (Figure 2).</li>
<li>Prior to freezing the blocks, it is necessary to cryoprotect the tissue in graded PBS-buffered sucrose solutions (10, 20, and 30%) maintained at 4&#x02DA;C until the brain sinks. It typically takes an overnight incubation in 10%, 2-3 days in 20% and additional 3-5 days in 30% for the blocks to sink to the bottom of the container. A daily change of the 30% sucrose solution is recommended. </li>
</ol>
Part 6: Representative Results
There are a number of gross morphological measurements that can be made once the brain has been removed from the skull. These include A/P length, weight, and specific density (Table 1). We generally block the brain into 6-7 blocks measuring 1cm (Figure 1). Each piece is then photographed (Figure 2) and can be further dissected depending on research needs or prepared for freezing in graded sucrose solutions.
<table border="1">
<tbody>
<tr>
<td> Subject</td>
<td>A/P&nbsp; Length (mm)</td>
<td>Weight (grams)</td>
<td>Water Displacement (ml)</td>
<td>Specific Density (g/ml)</td>
</tr>
<tr>
<td>O2303-2-1-1</td>
<td>64.3</td>
<td>28.1</td>
<td>24</td>
<td>1.171</td>
</tr>
<tr>
<td>O5180-1</td>
<td>71.3</td>
<td>38.7</td>
<td>34</td>
<td>1.138</td>
</tr>
<tr>
<td>O2708-3-1</td>
<td>62.8</td>
<td>28.7</td>
<td>26</td>
<td>1.104</td>
</tr>
<tr>
<td>O9184-4-2</td>
<td>65.3</td>
<td>29.5</td>
<td>24</td>
<td>1.229</td>
</tr>
<tr>
<td>N459-1-14-2</td>
<td>68.2</td>
<td>31.6</td>
<td>26</td>
<td>1.215</td>
</tr>
<tr>
<td>AVERAGE</td>
<td>66.38</td>
<td>31.32</td>
<td>26.8</td>
<td>1.171</td>
</tr>
<tr>
<td>STD DEV</td>
<td>3.38</td>
<td>4.33</td>
<td>4.17</td>
<td>0.052</td>
</tr>
</tbody>
</table>
Table 1. Gross Morphological Measurements of the Right Hemisphere of 5 Month Old Vervets
<img src="/files/ftp_upload/1259/1259fig1.jpg" alt="figure 1" /> <img src="/files/ftp_upload/1259/1259fig2.jpg" alt="figure 1.5" /> Figure 1. Schematics for the coronal planes used for blocking the brain. This is an example of an externalized adult vervet brain. Example of the blocking procedure. The vertical lines here are spaced at 1cm, typically producing 7 coronal blocks from each hemisphere.
<img src="/files/ftp_upload/1259/1259fig3.jpg" alt="figure 2" /> Figure 2. Blocks of brain tissue in stereotaxic space.Each block will yield approximately 200 sections taken at 50&micro;m. With this sampling scheme over 1200 sections through the cortex will be taken and an additional 400-500 from the cerebellum when sliced in the coronal plane.

<ol>
	<li>Gallagher, M., Rapp, P. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+use+of+animal+models+to+study+the+effects+of+aging+on+cognition.+Annu+Rev+Psychol+48.">The use of animal models to study the effects of aging on cognition. Annu Rev Psychol 48.</a> , 339-370 (1997).</li><li>Clancy, B., Darlington, R., Finlay, B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Translating+developmental+time+across+mammalian+species.">Translating developmental time across mammalian species.</a> Neuroscience. 105, 7-17 (2001).</li><li>Nowakowski, R. S., Rakic, P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+site+of+origin+and+route+and+rate+of+migration+of+neurons+to+the+hippocampal+region+of+the+rhesus+monkey.">The site of origin and route and rate of migration of neurons to the hippocampal region of the rhesus monkey.</a> J Comp Neurol. 196, 129-154 (1981).</li><li>Rakic, P., Bourgeois, J. P., Eckenhoff, M. F., Zecevic, N., Goldman-Rakic, P. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Concurrent+overproduction+of+synapses+in+diverse+regions+of+the+primate+cerebral+cortex.">Concurrent overproduction of synapses in diverse regions of the primate cerebral cortex.</a> Science. 232, 232-235 (1986).</li><li>Granger, B., Tekaia, F., Le Sourd, A. M., Rakic, P., Bourgeois, J. P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Tempo+of+neurogenesis+and+synaptogenesis+in+the+primate+cingulate+mesocortex:+comparison+with+the+neocortex.">Tempo of neurogenesis and synaptogenesis in the primate cingulate mesocortex: comparison with the neocortex.</a> J Comp Neurol. 360, 363-376 (1995).</li><li>Zecevic, N., Rakic, P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Development+of+layer+I+neurons+in+the+primate+cerebral+cortex.">Development of layer I neurons in the primate cerebral cortex.</a> J Neurosci. 21, 5607-5619 (2001).</li><li>Ervin, F. R., Palmour, R. M., Young, S. N., Guzman-Flores, C., Juarez, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Voluntary+consumption+of+beverage+alcohol+by+vervet+monkeys:+population+screening,+descriptive+behavior+and+biochemical+measures.">Voluntary consumption of beverage alcohol by vervet monkeys: population screening, descriptive behavior and biochemical measures.</a> Pharmacol Biochem Behav. 36, 367-373 (1990).</li><li>Palmour, R. M., Mulligan, J., Howbert, J. J., Ervin, F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Of+monkeys+and+men:+vervets+and+the+genetics+of+human-like+behaviors.">Of monkeys and men: vervets and the genetics of human-like behaviors.</a> Am J Hum Genet. 61, 481-488 (1997).</li><li>Boire, D., Th&#233;oret, H., Ptito, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Stereological+evaluation+of+neurons+and+glia+in+the+monkey+dorsal+lateral+geniculate+nucleus+following+an+early+cerebral+hemispherectomy.">Stereological evaluation of neurons and glia in the monkey dorsal lateral geniculate nucleus following an early cerebral hemispherectomy.</a> Exp Brain Res. 142, 208-220 (2002).</li><li>Bjugstad, K. B., Teng, Y. D., Redmond, D. E. J. r., Elsworth, J. D., Roth, R. H., Cornelius, S. K., Snyder, E. Y., Sladek, J. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Human+neural+stem+cells+migrate+along+the+nigrostriatal+pathway+in+a+primate+model+of+Parkinson's+disease.">Human neural stem cells migrate along the nigrostriatal pathway in a primate model of Parkinson's disease.</a> Exp Neurol. 211, 362-369 (2008).</li><li>Lemere, C. A., Beierschmitt, A., Iglesias, M., Spooner, E. T., Bloom, J. K., Leverone, J. F., Zheng, J. B., Seabrook, T. J., Louard, D., Li, D., Selkoe, D. J., Palmour, R. M., Ervin, F. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Alzheimer's+disease+abeta+vaccine+reduces+central+nervous+system+abeta+levels+in+a+non-human+primate,+the+Caribbean+vervet.">Alzheimer's disease abeta vaccine reduces central nervous system abeta levels in a non-human primate, the Caribbean vervet.</a> Am J Pathol. 165, 283-297 (2004).</li><li>Mash, D. C., Staley, J. K., Doepel, F. M., Young, S. N., Ervin, F. R., Palmour, R. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Altered+dopamine+transporter+densities+in+alcohol-preferring+vervet+monkeys.">Altered dopamine transporter densities in alcohol-preferring vervet monkeys.</a> Neuroreport. 7, 457-462 (1996).</li><li>Burke, M. W., Palmour, R. M., Ervin, F. R., Ptito, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Neuronal+reduction+in+frontal+cortex+of+primates+after+prenatal+alcohol+exposure.">Neuronal reduction in frontal cortex of primates after prenatal alcohol exposure.</a> Neuroreport. 20, 13-17 (2009).</li></ol>

The authors have nothing to disclose.

The St. Kitts vervet (Chlorocebus aethiops sabeus) is an Old World primate with similar patterns and rates of cortical and subcortical brain development to that of humans. This species has been used to model complex human behavioral disorders like anxious behavior, hypertension8, hemispherectomy9, Parkinson&rsquo;s disease10, Alzhemier&rsquo;s disease11, and alcohol abuse12. More recently, this species has been used to study the neuroanatomical effects of na...

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<td>Scalpel</td>
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dissecting the non-human primate brain in stereotaxic space

The use of non-human primates provides an excellent translational model for our understanding of developmental and aging processes in humans1-6. In addition, the use of non-human primates has recently afforded the opportunity to naturally model complex psychiatric disorders such as alcohol abuse7. Here we describe a technique for blocking the brain in the coronal plane of the vervet monkey (Chlorocebus aethiops sabeus) in the intact skull in stereotaxic space. The method described here provides a standard plane of section between blocks and subjects and minimizes partial sections between blocks. Sectioning a block of tissue in the coronal plane also facilitates the delineation of an area of interest. This method provides manageable sized blocks since a single hemisphere of the vervet monkey yields more than 1200 sections when slicing at 50&mu;m. Furthermore by blocking the brain into 1cm blocks, it facilitates penetration of sucrose for cyroprotection and allows the block to be sliced on a standard cryostat.

Watch this Scientific Journal Video about Dissecting the Non-human Primate Brain in Stereotaxic Space at JoVE.com

Dissecting the Non-human Primate Brain in Stereotaxic Space

The non-human primate is an important translational species for our understanding of the normal processing of the brain. The anatomical organization of the primate brain can provide important insights into normal and pathological conditions in humans.

The use of non-human primates provides an excellent translational model for our understanding of developmental and aging processes in humans1-6. In ...

dissecting-the-non-human-primate-brain-in-stereotaxic-space

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10.0K Views.  University of Montreal. The non-human primate is an important translational species for our understanding of the normal processing of the brain. The anatomical organization of the primate brain can provide important insights into normal and pathological conditions in humans.

Video: Dissecting the Non-human Primate Brain in Stereotaxic Space

Single Cell Electroporation in vivo within the Intact Developing Brain

Single-cell electroporation (SCE) is a specialized technique allowing the delivery of DNA or other macromolecules into individual cells within intact tissue, including in vivo preparations. The distinct advantage of this technique is that experimental manipulations may be performed on individual cells while leaving the surrounding tissue unaltered, thereby distinguishing cell-autonomous effects from those resulting from global treatments. When combined with advanced in vivo imaging techniques, SCE of fluorescent markers permits direct visualization of cellular morphology, cell growth, and intracellular events over timescales ranging from seconds to days. While this technique is used in a variety of in vivo and ex vivo preparations, we have optimized this technique for use in Xenopus laevis tadpoles. In this video article, we detail the procedure for SCE of a fluorescent dye or plasmid DNA into neurons within the intact brain of the albino Xenopus tadpole. We also discuss methods to optimize yield, and show examples of live two-photon fluorescence imaging of neurons fluorescently labeled by SCE.

Single-cell electroporation (SCE) is a specialized technique allowing delivery of DNA or other macromolecules into individual cells within intact tissue, including in vivo preparations. Here we detail the procedure for SCE of a fluorescent dye or plasmid DNA into neurons within the intact brain of the Xenopus laevis tadpole.

Single-cell electroporation (SCE) is a specialized technique allowing the delivery of DNA or other macromolecules into individual cells within intact ...

Survivable Stereotaxic Surgery in Rodents 

The ability to measure extracellular basal levels of neurotransmitters in the brain of awake animals allows for the determination of effects of different systemic challenges (pharmacological or physiological) to the CNS. For example, one can directly measure how the animal's midbrain dopamine projections respond to dopamine-releasing drugs like d-amphetamine or natural stimuli like food. In this video, we show you how to implant guide cannulas targeting specific sites in the rat brain, how to insert and implant a microdialysis probe and how to use high performance liquid chromatography coupled with electrochemical detection (HPLC-EC) to measure extracellular levels of oxidizable neurotransmitters and metabolites. Local precise introduction of drugs through the microdialysis probe allows for refined work on site specificity in a compound s mechanism of action. This technique has excellent anatomical and chemical resolution but only modest time resolution as microdialysis samples are usually processed every 20-30 minutes to ensure detectable neurotransmitter levels. Complementary ex vivo tools (i.e., slice and cell culture electrophysiology) can assist with monitoring real-time neurotransmission.

Survivable Stereotaxic Surgery in Rodents

The monitoring of extracellular neurotransmitter levels in distinct brain regions of freely moving animals offers insights on the link between neurotransmitter release and behavior. In vivo microdialysis coupled with electrochemical detection provides excellent anatomical and chemical resolution; and information on how basal neurotransmission is altered by pharmacological or physiological manipulations.

The ability to measure extracellular basal levels of neurotransmitters in the brain of awake animals allows for the determination of effects of different ...

Dissecting and Recording from The C. Elegans Neuromuscular Junction

Neurotransmission is the process by which neurons transfer information via chemical signals to their post-synaptic targets, on a rapid time scale. This complex process requires the coordinated activity of many pre- and post-synaptic proteins to ensure appropriate synaptic connectivity, conduction of electrical signals, targeting and priming of secretory vesicles, calcium sensing, vesicle fusion, localization and function of postsynaptic receptors and finally, recycling mechanisms. As neuroscientists it is our goal to elucidate which proteins function in each of these steps and understand their mechanisms of action. Electrophysiological recordings from synapses provide a quantifiable read out of the underlying electrical events that occur during synaptic transmission. By combining this technique with the powerful array of molecular and genetic tools available to manipulate synaptic proteins in C. elegans, we can analyze the resulting functional changes in synaptic transmission. 
The C. elegans NMJs formed between motor neurons and body wall muscles control locomotion, therefore, mutants with uncoordinated locomotory phenotypes (known as unc s) often perturb synaptic transmission at these synapses 1. Since unc mutants are maintained on a rich supply of a bacterial food source, they remain viable as long as they retain some pharyngeal pumping ability to ingest food. This, together with the fact that C. elegans exist as hermaphrodites, allows them to pass on mutant progeny without the need for elaborate mating behaviors. These attributes, coupled with our recent ability to record from the worms NMJs 2,3,7 make this an excellent model organism in which to address precisely how unc mutants impact neurotransmission. 
The dissection method involves immobilizing adult worms using a cyanoacrylic glue in order to make an incision in the worm cuticle exposing the NMJs. Since C. elegans adults are only 1 mm in length the dissection is performed with the use of a dissecting microscope and requires excellent hand-eye coordination. NMJ recordings are made by whole-cell voltage clamping individual body wall muscle cells and neurotransmitter release can be evoked using a variety of stimulation protocols including electrical stimulation, light-activated channel-rhodopsin-mediated depolarization 4 and hyperosmotic saline, all of which will be briefly described.

Application of electrophysiology to accessible synapses provides a quantifiable measure of synaptic activity, useful in analyzing synaptic mutants. This article describes a dissection method used to expose the neuromuscular junctions (NMJ) of Caenorhabditis elegans (C. elegans) and briefly discusses some of the uses to which this preparation can be applied.

Neurotransmission is the process by which neurons transfer information via chemical signals to their post-synaptic targets, on a rapid time scale.   This ...

The Gateway to the Brain: Dissecting the Primate Eye

The visual system in humans is considered the gateway to the world and plays a principal role in the plethora of sensory, perceptual and cognitive processes. It is therefore not surprising that quality of vision is tied to quality of life . Despite widespread clinical and basic research surrounding the causes of visual disorders, many forms of visual impairments, such as retinitis pigmentosa and macular degeneration, lack effective treatments. Non-human primates have the closest general features of eye development to that of humans. Not only do they have a similar vascular anatomy, but amongst other mammals, primates have the unique characteristic of having a region in the temporal retina specialized for high visual acuity, the fovea1. Here we describe a general technique for dissecting the primate retina to provide tissue for retinal histology, immunohistochemistry, laser capture microdissection, as well as light and electron microscopy. With the extended use of the non-human primate as a translational model, our hope is that improved understanding of the retina will provide insights into effective approaches towards attenuating or reversing the negative impact of visual disorders on the quality of life of affected individuals.

The non-human primate is an important translational species for our understanding of development and aging. The anatomical organization of the primate retina may provide important insights into normal and pathological conditions in humans.

The visual system in humans is considered the  gateway  to the world and plays a principal role in the plethora of sensory, perceptual and cognitive ...

Knowing What Counts: Unbiased Stereology in the Non-human Primate Brain

The non-human primate is an important translational species for understanding the normal function and disease processes of the human brain. Unbiased stereology, the method accepted as state-of-the-art for quantification of biological objects in tissue sections2, generates reliable structural data for biological features in the mammalian brain3. The key components of the approach are unbiased (systematic-random) sampling of anatomically defined structures (reference spaces), combined with quantification of cell numbers and size, fiber and capillary lengths, surface areas, regional volumes and spatial distributions of biological objects within the reference space4. Among the advantages of these stereological approaches over previous methods is the avoidance of all known sources of systematic (non-random) error arising from faulty assumptions and non-verifiable models. This study documents a biological application of computerized stereology to estimate the total neuronal population in the frontal cortex of the vervet monkey brain (Chlorocebus aethiops sabeus), with assistance from two commercially available stereology programs, BioQuant Life Sciences and Stereologer (Figure 1). In addition to contrast and comparison of results from both the BioQuant and Stereologer systems, this study provides a detailed protocol for the Stereologer system.

The anatomical organization of the primate brain can provide important insights into normal and pathological conditions in humans. Unbiased stereology is a method for accurately and efficiently estimating the total neuron number (or other cell type) in a given reference space1.

The non-human primate is an important translational species for understanding the normal function and disease processes of the human brain. Unbiased ...

Trajectory Data Analyses for Pedestrian Space-time Activity Study

It is well recognized that human movement in the spatial and temporal dimensions has direct influence on disease transmission1-3. An infectious disease typically spreads via contact between infected and susceptible individuals in their overlapped activity spaces. Therefore, daily mobility-activity information can be used as an indicator to measure exposures to risk factors of infection. However, a major difficulty and thus the reason for paucity of studies of infectious disease transmission at the micro scale arise from the lack of detailed individual mobility data. Previously in transportation and tourism research detailed space-time activity data often relied on the time-space diary technique, which requires subjects to actively record their activities in time and space. This is highly demanding for the participants and collaboration from the participants greatly affects the quality of data4.
Modern technologies such as GPS and mobile communications have made possible the automatic collection of trajectory data. The data collected, however, is not ideal for modeling human space-time activities, limited by the accuracies of existing devices. There is also no readily available tool for efficient processing of the data for human behavior study. We present here a suite of methods and an integrated ArcGIS desktop-based visual interface for the pre-processing and spatiotemporal analyses of trajectory data. We provide examples of how such processing may be used to model human space-time activities, especially with error-rich pedestrian trajectory data, that could be useful in public health studies such as infectious disease transmission modeling.
The procedure presented includes pre-processing, trajectory segmentation, activity space characterization, density estimation and visualization, and a few other exploratory analysis methods. Pre-processing is the cleaning of noisy raw trajectory data. We introduce an interactive visual pre-processing interface as well as an automatic module. Trajectory segmentation5 involves the identification of indoor and outdoor parts from pre-processed space-time tracks. Again, both interactive visual segmentation and automatic segmentation are supported. Segmented space-time tracks are then analyzed to derive characteristics of one's activity space such as activity radius etc. Density estimation and visualization are used to examine large amount of trajectory data to model hot spots and interactions. We demonstrate both density surface mapping6 and density volume rendering7. We also include a couple of other exploratory data analyses (EDA) and visualizations tools, such as Google Earth animation support and connection analysis. The suite of analytical as well as visual methods presented in this paper may be applied to any trajectory data for space-time activity studies.

A suite of spatiotemporal processing methods are presented to analyze human trajectory data, such as that collected using a GPS device, for the purpose of modeling pedestrian space-time activities.

It is well recognized that human movement in the  spatial and temporal dimensions has direct influence on disease transmission1-3.  An infectious disease ...

Physiology Lab Demonstration: Glomerular Filtration Rate in a Rat

Measurements of glomerular filtration rate (GFR), and the fractional excretion of sodium (Na) and potassium (K) are critical in assessing renal function in health and disease. GFR is measured as the steady state renal clearance of inulin which is filtered at the glomerulus, but not secreted or reabsorbed along the nephron. The fractional excretion of Na and K can be determined from the concentration of Na and K in plasma and urine. The renal clearance of inulin can be demonstrated in an anesthetized animal which has catheters in the femoral artery, femoral vein and bladder. The equipment and supplies used for this procedure are those commonly available in a research core facility, and thus makes this procedure a practical means for measuring renal function. The purpose of this video is to demonstrate the procedures required to perform a lab demonstration in which renal function is assessed before and after a diuretic drug. The presented technique can be utilized to assess renal function in rat models of renal disease.

The purpose of this protocol is to demonstrate the principles and techniques for measuring and calculating glomerular filtration rate, urine flow rate, and excretion of sodium and potassium in a rat. This demonstration can be used to provide students with an overall conceptual understanding of how to measure renal function.

Measurements of glomerular filtration rate (GFR), and the fractional excretion of sodium (Na) and potassium (K) are critical in assessing renal function ...

Sampling Blood from the Lateral Tail Vein of the Rat

Blood samples are commonly obtained in many experimental contexts to measure targets of interest, including hormones, immune factors, growth factors, proteins, and glucose, yet the composition of the blood is dynamically regulated and easily perturbed. One factor that can change the blood composition is the stress response triggered by the sampling procedure, which can contribute to variability in the measures of interest. Here we describe a procedure for blood sampling from the lateral tail vein in the rat. This procedure offers significant advantages over other more commonly used techniques. It permits rapid sampling with minimal pain or invasiveness, without anesthesia or analgesia. Additionally, it can be used to obtain large volume samples (upwards of 1 ml in some rats), and it may be used repeatedly across experimental days. By minimizing the stress response and pain resulting from blood sampling, measures can more accurately reflect the true basal state of the animal, with minimal influence from the sampling procedure itself.

Blood samples are useful for assessing biomarkers of physiological states or disease in vivo. Here we describe the methodology to sample blood from the lateral tail vein in the rat. This method provides rapid samples with minimal pain and invasiveness.

Blood samples are commonly obtained in many experimental contexts to measure targets of interest, including hormones, immune factors, growth factors, ...

Micropuncture of Bowman's Space in Mice Facilitated by 2 Photon Microscopy

Renal micropuncture and renal 2-photon imaging are seminal techniques in renal physiology. However, micropuncture is limited by dependence on conventional microscopy to surface nephron features, and 2-photon studies are limited in that interventions can only be assessed at the organ, rather than the nephron level. In particular, micropuncture studies of the glomeruli of mice have been challenged by the paucity of surface glomeruli in mice. To address this limitation in order to pursue studies of aspirate from Bowman&#39;s space in mouse physiologic models, we developed 2-photon glomerular micropuncture. We present a novel surgical preparation that allows lateral access to the kidney while preserving the required vertical imaging column for 2-photon microscopy. Administration of high molecular weight fluorescein isothiocyanate (FITC)-dextran is used to render the renal vasculature and therefore glomeruli visible for 2-photon imaging. A quantum dot-coated pipette is then introduced under stereotactic guidance to a glomerulus selected from the several to many which may be visualized within the imaging window. In this protocol, we provide details of the preparation, materials, and methods necessary to carry out the procedure. This technique facilitates previously-impossible physiologic study of the kidney, including recovery of filtrate from Bowman&#39;s space and all segments of the nephron within the imaging depth limit, about 100 &#181;m below the renal capsule. Pressure, charge and flow may all be measured using the introduced pipette. Here, we provide representative data from liquid chromatography/mass spectrometry performed on aspirate from Bowman&#39;s space. We expect this technique to have wide applicability in renal physiologic investigation.

We present use of 2-photon microscopy to place a micropipette within Bowman&#39;s urinary space in mice, combining 2 foundational techniques of renal physiology. Use of 2-photon microscopy overcomes critical limitations of conventional microscopy for micropuncture renal physiology studies.

Renal micropuncture and renal 2-photon imaging are seminal techniques in renal physiology. However, micropuncture is limited by dependence on conventional ...

Reverse Dissection and DiceCT Reveal Otherwise Hidden Data in the Evolution of the Primate Face

Facial expressions, or facial displays, of social or emotional intent are produced by many mammalian taxa as a means of visually communicating with conspecifics at a close range. These displays are achieved by contraction of the mimetic muscles, which are skeletal muscle attached to the dermis of the face. Reverse dissection, removing the full facial mask from the skull and approaching mimetic muscles in reverse, is an effective but destructive way of revealing the morphology of mimetic muscles but it is destructive. DiceCT is a novel mechanism for visualizing skeletal muscles, including mimetic muscles, and isolating individual muscle fascicles for quantitative measurement. Additionally, DiceCT provides a non-destructive mechanism for visualizing muscles. The combined techniques of reverse dissection and DiceCT can be used to assess the evolutionary morphology of mimetic musculature as well as potential contraction strength and velocity in these muscles. This study further demonstrates that DiceCT can be used to accurately and reliably visualize mimetic muscles as well as reverse dissection and provide a non-destructive method for sampling mimetic muscles.

Facial expressions are a mode of visual communication produced by mimetic muscles. Here, we present protocols for the novel techniques of reverse dissection and DiceCT to fully visualize and assess mimetic muscles. These combined techniques can examine both morphological and physiological aspects of mimetic musculature to determine functional aspects.

Facial expressions, or facial displays, of social or emotional intent are produced by many mammalian taxa as a means of visually communicating with ...